Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATATGATAAAAATGAAAAAAAAAGAAAGAAAAGAAAAGAAAATTCCGACCCATTAAAAAGCAGCATTTCTCTTACACAAATATCTCTTAAGTTTCTTACTTTTAATTTGTTTGCTTTCTTTTTGTAAATGGAAGAAGTTTGGAAAGACATTACTCTCTCTTCTCTCCATTCCCGTTCCGACCATGACTTCTCCTCCGCCGCTCCCACTCCCATCAGTCTCCACCTCCACCACCACCACTCCGCCGCCAACTTACGTCACATCATCCTCCAAGACTTCCTTTCTTCTTCCACTTCCAAACTTGACTCCTCCTCTGCCCACGCGGCGCCGCCAGCCGCTAGATCGCCTCCCTCCGCCTCCCCAACTACTGGTCCAGTTGTGCCTTGAATTCCCACGGGGAATTAACATTTCCTCGATAACTGCCATGCGGCGGCGACCAACTTCGCACAGGATCGTATCTCGTCGTCTCGTCAGCCCTTCCACAAGCCCTTTATGATCAAAGTCTTTGGACCACCGACGGCCTGTCGGCAAAAAAAAGGGTCACTGATTAGATAATCCGGAGATCGGCGGCCAGATAACGTAATGATCAAGAATCGCGATCCGCTGCCGAATCTCGTTTCGCACGAAAAAGGTTTAAAGATAATCCATTCCTAATCTTTTTTTAATTAAATACTCATCTAAATTGTAATTGGTGTTAATAATAATGGTATTTAAATCCACGAGGCTATCGGGCAAACGAGACCTGGGAGCTTGGAAGTGTCAAGATTCTAAATGGAAGAGAATGCGAAACTGTAGGAGACACAAGAAGAGGTAACTAAGAGCTATTCTTTCAGCGAATTTTTTCTCTTTTTACTCTAAATTTTGATATCTCTTTATACATATATATTTGAAATTTGAGGAGATTACAAAGATCAATTAGAGATTTATTAGAAACACCTAAATAGGCACGAACAATAATAAGCAAGAAGGTTAAGAAAACGGTTGTGTTTGCAGCTACAAGCAGCGGCGATGGCTCAAGTCCCAAGAAAACACAGGCTGCAGCGGACATCGACGGCGCCGTTTTAG
mRNA sequence
GTATATGATAAAAATGAAAAAAAAAGAAAGAAAAGAAAAGAAAATTCCGACCCATTAAAAAGCAGCATTTCTCTTACACAAATATCTCTTAAGTTTCTTACTTTTAATTTGTTTGCTTTCTTTTTGTAAATGGAAGAAGTTTGGAAAGACATTACTCTCTCTTCTCTCCATTCCCGTTCCGACCATGACTTCTCCTCCGCCGCTCCCACTCCCATCAGTCTCCACCTCCACCACCACCACTCCGCCGCCAACTTACGTCACATCATCCTCCAAGACTTCCTTTCTTCTTCCACTTCCAAACTTGACTCCTCCTCTGCCCACGCGGCGCCGCCAGCCGCTAGATCGCCTCCCTCCGCCTCCCCAACTACTGGTCCAGTTGATCGTATCTCGTCGTCTCGTCAGCCCTTCCACAAGCCCTTTATGATCAAAGTCTTTGGACCACCGACGGCCTATCGGCGGCCAGATAACGTAATGATCAAGAATCGCGATCCGCTGCCGAATCTCGTTTCGCACGAAAAAGAGAATGCGAAACTAAAACGGTTGTGTTTGCAGCTACAAGCAGCGGCGATGGCTCAAGTCCCAAGAAAACACAGGCTGCAGCGGACATCGACGGCGCCGTTTTAG
Coding sequence (CDS)
ATGGAAGAAGTTTGGAAAGACATTACTCTCTCTTCTCTCCATTCCCGTTCCGACCATGACTTCTCCTCCGCCGCTCCCACTCCCATCAGTCTCCACCTCCACCACCACCACTCCGCCGCCAACTTACGTCACATCATCCTCCAAGACTTCCTTTCTTCTTCCACTTCCAAACTTGACTCCTCCTCTGCCCACGCGGCGCCGCCAGCCGCTAGATCGCCTCCCTCCGCCTCCCCAACTACTGGTCCAGTTGATCGTATCTCGTCGTCTCGTCAGCCCTTCCACAAGCCCTTTATGATCAAAGTCTTTGGACCACCGACGGCCTATCGGCGGCCAGATAACGTAATGATCAAGAATCGCGATCCGCTGCCGAATCTCGTTTCGCACGAAAAAGAGAATGCGAAACTAAAACGGTTGTGTTTGCAGCTACAAGCAGCGGCGATGGCTCAAGTCCCAAGAAAACACAGGCTGCAGCGGACATCGACGGCGCCGTTTTAG
Protein sequence
MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDSSSAHAAPPAARSPPSASPTTGPVDRISSSRQPFHKPFMIKVFGPPTAYRRPDNVMIKNRDPLPNLVSHEKENAKLKRLCLQLQAAAMAQVPRKHRLQRTSTAPF
Homology
BLAST of Pay0008911 vs. ExPASy TrEMBL
Match:
A0A5A7UAI3 (Protein FD OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G00510 PE=4 SV=1)
HSP 1 Score: 163.7 bits (413), Expect = 6.5e-37
Identity = 112/213 (52.58%), Postives = 129/213 (60.56%), Query Frame = 0
Query: 1 MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDS 60
MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDS
Sbjct: 1 MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDS 60
Query: 61 SSAHAAPPAARSPPSASPTTGPVDRISSSRQ-----------------------PFHKPF 120
SS+ ++ AA + PS P V ++S+R+ FH PF
Sbjct: 61 SSS-SSSAAAAAVPSLPPPPPTVLSLNSTRELHFLDNPIAAAHFRHQDPSSVSAAFHSPF 120
Query: 121 MIKVFGPP-----------TAYRRPDNVMIKNRDPLP---------------NLVSHEKE 165
+V GPP + R MIKNR+ + + ++E
Sbjct: 121 -DQVLGPPPFGKKRVTDSDNSGDRRQKRMIKNRESAARSRARKQAYANELELEVSNLKEE 180
BLAST of Pay0008911 vs. ExPASy TrEMBL
Match:
A0A1S3BJW5 (protein FD OS=Cucumis melo OX=3656 GN=LOC103490672 PE=4 SV=1)
HSP 1 Score: 163.7 bits (413), Expect = 6.5e-37
Identity = 112/213 (52.58%), Postives = 129/213 (60.56%), Query Frame = 0
Query: 1 MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDS 60
MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDS
Sbjct: 1 MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDS 60
Query: 61 SSAHAAPPAARSPPSASPTTGPVDRISSSRQ-----------------------PFHKPF 120
SS+ ++ AA + PS P V ++S+R+ FH PF
Sbjct: 61 SSS-SSSAAAAAVPSLPPPPPTVLSLNSTRELHFLDNPIAAAHFRHQDPSSVSAAFHSPF 120
Query: 121 MIKVFGPP-----------TAYRRPDNVMIKNRDPLP---------------NLVSHEKE 165
+V GPP + R MIKNR+ + + ++E
Sbjct: 121 -DQVLGPPPFGKKRVTDSDNSGDRRQKRMIKNRESAARSRARKQAYANELELEVSNLKEE 180
BLAST of Pay0008911 vs. ExPASy TrEMBL
Match:
A0A0A0L664 (BZIP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002610 PE=4 SV=1)
HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 114/215 (53.02%), Postives = 127/215 (59.07%), Query Frame = 0
Query: 1 MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLD- 60
MEEVWKDI+LSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLS+STSKLD
Sbjct: 1 MEEVWKDISLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSTSTSKLDS 60
Query: 61 ----SSSAHAAPPAARSPPS------------------ASPTTGPVDR---ISSSRQPFH 120
SSSA A PP PP+ A+ T R SS FH
Sbjct: 61 SSSSSSSALALPPVPAPPPTLLSLNSTRELHFPDNNSIATATAAAHFRHHDPSSLSAAFH 120
Query: 121 KPFMIKVFGPPTAYRR---PDNV-------MIKNRDPLP---------------NLVSHE 165
PF + PP A +R DN MIKNR+ + + +
Sbjct: 121 SPFDQLLGPPPFAKKRLSDSDNSGDRRQKRMIKNRESAARSRARKQAYANELELEVSNLK 180
BLAST of Pay0008911 vs. ExPASy TrEMBL
Match:
A0A6J1HN91 (protein FD OS=Cucurbita maxima OX=3661 GN=LOC111465189 PE=4 SV=1)
HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 110/210 (52.38%), Postives = 123/210 (58.57%), Query Frame = 0
Query: 1 MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDS 60
MEEVWKDI LSSLHSRSDHDF SAA TPISLHLHHHHSAAN RHIILQDFLSSSTSKLDS
Sbjct: 1 MEEVWKDINLSSLHSRSDHDFPSAAATPISLHLHHHHSAANFRHIILQDFLSSSTSKLDS 60
Query: 61 SSAHAA-----PPAARS---------PPSASPTTGPVDRI-----SSSRQPFHKPFMIKV 120
SSA AA PP S P +A+ SS+ FH PF +
Sbjct: 61 SSAAAAAAVAPPPTVLSLNSTRELHFPDNAAVAAAAAAHFCHPNPSSATAAFHSPFDQVL 120
Query: 121 FGPPTAYRR-PDN-----------VMIKNRD--------------PLPNLVSH-EKENAK 165
PP A +R PD+ MIKNR+ L V+H +ENA+
Sbjct: 121 GPPPFAKKRVPDSDSNNSGDRRQKRMIKNRESAARSRARKQAYTNELELEVAHLMEENAR 180
BLAST of Pay0008911 vs. ExPASy TrEMBL
Match:
A0A6J1E646 (protein FD OS=Cucurbita moschata OX=3662 GN=LOC111431061 PE=4 SV=1)
HSP 1 Score: 145.2 bits (365), Expect = 2.4e-31
Identity = 109/213 (51.17%), Postives = 122/213 (57.28%), Query Frame = 0
Query: 1 MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDS 60
MEEVWKDI LSSLHSRSDHDF SAA TPISLHLHH HSAAN RHIILQDFLSSSTSKLDS
Sbjct: 1 MEEVWKDINLSSLHSRSDHDFPSAAATPISLHLHHQHSAANFRHIILQDFLSSSTSKLDS 60
Query: 61 SSAHAA--------PPAARS---------PPSASPTTGPVDRI-----SSSRQPFHKPFM 120
SSA AA PP S P +A+ SS+ FH PF
Sbjct: 61 SSAAAAAAVAAVAPPPTVLSLNSTRELHFPDNAAVAAAAAAHFCHPNPSSATAAFHSPFD 120
Query: 121 IKVFGPPTAYRR-PDN-----------VMIKNRD--------------PLPNLVSH-EKE 165
+ PP A +R PD+ MIKNR+ L V+H +E
Sbjct: 121 QVLGPPPFAKKRVPDSDSNNSGDRRQKRMIKNRESAARSRARKQAYTNELELEVAHLMEE 180
BLAST of Pay0008911 vs. NCBI nr
Match:
XP_008448521.1 (PREDICTED: protein FD [Cucumis melo] >KAA0052943.1 protein FD [Cucumis melo var. makuwa])
HSP 1 Score: 163.7 bits (413), Expect = 1.3e-36
Identity = 112/213 (52.58%), Postives = 129/213 (60.56%), Query Frame = 0
Query: 1 MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDS 60
MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDS
Sbjct: 1 MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDS 60
Query: 61 SSAHAAPPAARSPPSASPTTGPVDRISSSRQ-----------------------PFHKPF 120
SS+ ++ AA + PS P V ++S+R+ FH PF
Sbjct: 61 SSS-SSSAAAAAVPSLPPPPPTVLSLNSTRELHFLDNPIAAAHFRHQDPSSVSAAFHSPF 120
Query: 121 MIKVFGPP-----------TAYRRPDNVMIKNRDPLP---------------NLVSHEKE 165
+V GPP + R MIKNR+ + + ++E
Sbjct: 121 -DQVLGPPPFGKKRVTDSDNSGDRRQKRMIKNRESAARSRARKQAYANELELEVSNLKEE 180
BLAST of Pay0008911 vs. NCBI nr
Match:
XP_011652706.2 (protein FD [Cucumis sativus] >KGN55667.2 hypothetical protein Csa_011045 [Cucumis sativus])
HSP 1 Score: 159.8 bits (403), Expect = 1.9e-35
Identity = 114/214 (53.27%), Postives = 127/214 (59.35%), Query Frame = 0
Query: 1 MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLD- 60
MEEVWKDI+LSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLS+STSKLD
Sbjct: 1 MEEVWKDISLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSTSTSKLDS 60
Query: 61 ---SSSAHAAPPAARSPPS------------------ASPTTGPVDR---ISSSRQPFHK 120
SSSA A PP PP+ A+ T R SS FH
Sbjct: 61 SSSSSSALALPPVPAPPPTLLSLNSTRELHFPDNNSIATATAAAHFRHHDPSSLSAAFHS 120
Query: 121 PFMIKVFGPPTAYRR---PDNV-------MIKNRDPLP---------------NLVSHEK 165
PF + PP A +R DN MIKNR+ + + ++
Sbjct: 121 PFDQLLGPPPFAKKRLSDSDNSGDRRQKRMIKNRESAARSRARKQAYANELELEVSNLKE 180
BLAST of Pay0008911 vs. NCBI nr
Match:
KAG6577792.1 (Protein FD, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015831.1 Protein FD, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 150.6 bits (379), Expect = 1.2e-32
Identity = 112/209 (53.59%), Postives = 124/209 (59.33%), Query Frame = 0
Query: 1 MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDS 60
MEEVWKDI LSSLHSRSDHDF SAA TPISLHLHHHHSAAN RHIILQDFLSSSTSKLDS
Sbjct: 1 MEEVWKDINLSSLHSRSDHDFPSAAATPISLHLHHHHSAANFRHIILQDFLSSSTSKLDS 60
Query: 61 SSAHAAPP-AARSPPSA-----------SPTTGPV------DRISSSRQPFHKPFMIKVF 120
SSA AA AA +PP P T V SS+ FH PF +
Sbjct: 61 SSAAAAAAVAAVAPPPTVLSLNSTRELHFPDTAAVAAHFCHPNPSSATAAFHSPFDQVLG 120
Query: 121 GPPTAYRR-PDN-----------VMIKNRD--------------PLPNLVSH-EKENAKL 165
PP A +R PD+ MIKNR+ L V+H +ENA+L
Sbjct: 121 PPPFAKKRVPDSDSNNSGDRRQKRMIKNRESAARSRARKQAYTNELELEVAHLMEENARL 180
BLAST of Pay0008911 vs. NCBI nr
Match:
XP_022965275.1 (protein FD [Cucurbita maxima])
HSP 1 Score: 149.4 bits (376), Expect = 2.6e-32
Identity = 110/210 (52.38%), Postives = 123/210 (58.57%), Query Frame = 0
Query: 1 MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDS 60
MEEVWKDI LSSLHSRSDHDF SAA TPISLHLHHHHSAAN RHIILQDFLSSSTSKLDS
Sbjct: 1 MEEVWKDINLSSLHSRSDHDFPSAAATPISLHLHHHHSAANFRHIILQDFLSSSTSKLDS 60
Query: 61 SSAHAA-----PPAARS---------PPSASPTTGPVDRI-----SSSRQPFHKPFMIKV 120
SSA AA PP S P +A+ SS+ FH PF +
Sbjct: 61 SSAAAAAAVAPPPTVLSLNSTRELHFPDNAAVAAAAAAHFCHPNPSSATAAFHSPFDQVL 120
Query: 121 FGPPTAYRR-PDN-----------VMIKNRD--------------PLPNLVSH-EKENAK 165
PP A +R PD+ MIKNR+ L V+H +ENA+
Sbjct: 121 GPPPFAKKRVPDSDSNNSGDRRQKRMIKNRESAARSRARKQAYTNELELEVAHLMEENAR 180
BLAST of Pay0008911 vs. NCBI nr
Match:
XP_023553184.1 (protein FD [Cucurbita pepo subsp. pepo])
HSP 1 Score: 149.1 bits (375), Expect = 3.4e-32
Identity = 109/210 (51.90%), Postives = 123/210 (58.57%), Query Frame = 0
Query: 1 MEEVWKDITLSSLHSRSDHDFSSAAPTPISLHLHHHHSAANLRHIILQDFLSSSTSKLDS 60
MEEVWKDI LSSLHSRSDHDF SAA TPISLHLHHHHSAAN RHIILQDFLSSSTSKLDS
Sbjct: 28 MEEVWKDINLSSLHSRSDHDFPSAAATPISLHLHHHHSAANFRHIILQDFLSSSTSKLDS 87
Query: 61 SSAHAAPP-AARSPPSASPTTGPVDRI------------------SSSRQPFHKPFMIKV 120
SSA AA AA +PP + + SS+ FH PF +
Sbjct: 88 SSAAAAAAVAAVAPPPTVLSLNSTRELHFPDHAAVAAAHFCHPNPSSASAAFHSPFDQVL 147
Query: 121 FGPPTAYRR-PDN-----------VMIKNRD--------------PLPNLVSH-EKENAK 165
PP A +R PD+ MIKNR+ L V+H +ENA+
Sbjct: 148 GPPPFAKKRVPDSDSNNSGDRRQKRMIKNRESAARSRARKQAYTNELELEVAHLMEENAR 207
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UAI3 | 6.5e-37 | 52.58 | Protein FD OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G00510 PE=... | [more] |
A0A1S3BJW5 | 6.5e-37 | 52.58 | protein FD OS=Cucumis melo OX=3656 GN=LOC103490672 PE=4 SV=1 | [more] |
A0A0A0L664 | 1.2e-35 | 53.02 | BZIP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002610 PE=4 S... | [more] |
A0A6J1HN91 | 1.3e-32 | 52.38 | protein FD OS=Cucurbita maxima OX=3661 GN=LOC111465189 PE=4 SV=1 | [more] |
A0A6J1E646 | 2.4e-31 | 51.17 | protein FD OS=Cucurbita moschata OX=3662 GN=LOC111431061 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_008448521.1 | 1.3e-36 | 52.58 | PREDICTED: protein FD [Cucumis melo] >KAA0052943.1 protein FD [Cucumis melo var.... | [more] |
XP_011652706.2 | 1.9e-35 | 53.27 | protein FD [Cucumis sativus] >KGN55667.2 hypothetical protein Csa_011045 [Cucumi... | [more] |
KAG6577792.1 | 1.2e-32 | 53.59 | Protein FD, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015831.1 Protei... | [more] |
XP_022965275.1 | 2.6e-32 | 52.38 | protein FD [Cucurbita maxima] | [more] |
XP_023553184.1 | 3.4e-32 | 51.90 | protein FD [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |