Pay0008734 (gene) Melon (Payzawat) v1

Overview


Name	Pay0008734
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Beta-galactosidase
Location	chr07: 5732343 .. 5733123 (-)
RNA-Seq Expression	Pay0008734
Synteny	Pay0008734

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTACTTTCTGTGAGAACCGACACTACTTTCCCGTTAGCCATCTTCAGGGGGAGAGTGTGAGTGAAAAGTCTTACAACACTTTCGAATTTACTGAACCTACTCCTAGTACTGTATCTGACGTTGATCCTCATCCCATAATCTTACCTGCAAACCAAGTTCCTTGGAAAACATATTACAGGAGGAATCTCATAAAGGAAGTTGGGTCCCCTACTAGTCAACCGCCGGCTCCAGTCCAAGACTTCGAACCTCCTCGAGACCAAGGTATGGAAAACCCTACAGAACCTTGTACTAATAATACGATGAGTGAGAATGACAAGTCTGATGTTGCTGTTCTTGAAAATATGGAAGAAAAGAACCGTGGTGATGAGATTGAGGTTAGAATAGAAATCAGTAATGATGAAGCAGAACAGGGTCATACAAGGAAACTTGATGAGTATGATCCCTCTCTTGACATTCCCATTGCTTTGAGAAAAGGTACCAGATCCTACACTAAACATCCCATTTGCAACTATGTTTCCTATGATAATCTCTCTTCACAGTTTAGAGCGTTTACAGCAAGCCTTGACTCTACCATAATACCGAAAAATATCTACACTGCTCTAGAGTGTCCTGAATGGAAAAATGCTGTTATGGAAGAGATGAAGGTTCTTGAAAAGAATAGAACTTGAGAGATCTGTGCTCTACCTAAGGGACGTAAAACTGTATGATGCAAATGGGTGTTCTCTCTCAAATACAAAACAGATGGTACACTTGATAGACACAAGGCAAGGTTAG

mRNA sequence

ATGGATGTTACTTTCTGTGAGAACCGACACTACTTTCCCGTTAGCCATCTTCAGGGGGAGAGTGTGAGTGAAAAGTCTTACAACACTTTCGAATTTACTGAACCTACTCCTAGTACTGTATCTGACGTTGATCCTCATCCCATAATCTTACCTGCAAACCAAGTTCCTTGGAAAACATATTACAGGAGGAATCTCATAAAGGAAGTTGGGTCCCCTACTAGTCAACCGCCGGCTCCAGTCCAAGACTTCGAACCTCCTCGAGACCAAGAAATCAGTAATGATGAAGCAGAACAGGGTCATACAAGGAAACTTGATGAGTATGATCCCTCTCTTGACATTCCCATTGCTTTGAGAAAAGAACTTGAGAGATCTGTGCTCTACCTAAGGGACGTAAAACTGTATGATGCAAATGGGTGTTCTCTCTCAAATACAAAACAGATGGTACACTTGATAGACACAAGGCAAGGTTAG

Coding sequence (CDS)

ATGGATGTTACTTTCTGTGAGAACCGACACTACTTTCCCGTTAGCCATCTTCAGGGGGAGAGTGTGAGTGAAAAGTCTTACAACACTTTCGAATTTACTGAACCTACTCCTAGTACTGTATCTGACGTTGATCCTCATCCCATAATCTTACCTGCAAACCAAGTTCCTTGGAAAACATATTACAGGAGGAATCTCATAAAGGAAGTTGGGTCCCCTACTAGTCAACCGCCGGCTCCAGTCCAAGACTTCGAACCTCCTCGAGACCAAGAAATCAGTAATGATGAAGCAGAACAGGGTCATACAAGGAAACTTGATGAGTATGATCCCTCTCTTGACATTCCCATTGCTTTGAGAAAAGAACTTGAGAGATCTGTGCTCTACCTAAGGGACGTAAAACTGTATGATGCAAATGGGTGTTCTCTCTCAAATACAAAACAGATGGTACACTTGATAGACACAAGGCAAGGTTAG

Protein sequence

MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTYYRRNLIKEVGSPTSQPPAPVQDFEPPRDQEISNDEAEQGHTRKLDEYDPSLDIPIALRKELERSVLYLRDVKLYDANGCSLSNTKQMVHLIDTRQG

Homology

[Close]

BLAST of Pay0008734 vs. ExPASy TrEMBL
Match: A0A5A7V851 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00020 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.4e-57
Identity = 119/161 (73.91%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 1   MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTY 60
           MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTY
Sbjct: 539 MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTY 598

Query: 61  YRRNLIKEVGSPTSQPPAPVQDFEPPRDQ------------------------------- 120
           YRRNLIKEVGSPTSQPPAPVQDFEPPRDQ                               
Sbjct: 599 YRRNLIKEVGSPTSQPPAPVQDFEPPRDQGMENPTEPCTNNTMSENDKSDVAVLENMEEK 658

[Close]

BLAST of Pay0008734 vs. ExPASy TrEMBL
Match: A0A5A7V3J5 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00020 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.7e-50
Identity = 105/131 (80.15%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 1    MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTY 60
            MDVTFCENR YFP SHLQGE+VSE+S NTFEF EPT  TVSD+DPHPIILP NQVPWKTY
Sbjct: 915  MDVTFCENRPYFPASHLQGENVSEESNNTFEFIEPTLITVSDIDPHPIILPTNQVPWKTY 974

Query: 61   YRRNLIKEVGSPTSQPPAPVQDFEPPRDQ------------EISNDEAEQGHTRKLDEYD 120
            YRRNL KEVGSPTSQPPAPVQ+FEPPRDQ            E SN EAEQGHTRKLDEYD
Sbjct: 975  YRRNLRKEVGSPTSQPPAPVQNFEPPRDQEKNRDDETEVRIETSNYEAEQGHTRKLDEYD 1034

[Close]

BLAST of Pay0008734 vs. ExPASy TrEMBL
Match: A0A5A7UDS7 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00920 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.2e-50
Identity = 108/160 (67.50%), Postives = 113/160 (70.62%), Query Frame = 0


Query: 1   MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTY 60
           MDVTFCE+R YFPVSHLQGESVSE+S NTFEF EPTPSTVSD+DPHPIILP NQVPWKTY
Sbjct: 518 MDVTFCEDRSYFPVSHLQGESVSEESNNTFEFIEPTPSTVSDIDPHPIILPTNQVPWKTY 577

Query: 61  YRRNLIKEVGSPTSQPPAPVQDFEPPRDQ------------------------------- 120
           YRRNLIKEVGSPT+QPPAPVQDFEPPRDQ                               
Sbjct: 578 YRRNLIKEVGSPTNQPPAPVQDFEPPRDQGMENPTEPYTNNTMSENDRSDVAVLENMEEK 637

[Close]

BLAST of Pay0008734 vs. ExPASy TrEMBL
Match: A0A5A7T392 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold154G00370 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.9e-50
Identity = 108/163 (66.26%), Postives = 116/163 (71.17%), Query Frame = 0


Query: 1   MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTY 60
           +DVTFCENR YFPVSHLQGE+VSE+S +TFEF EPTPSTVSDVDPHPIILP NQVPWKTY
Sbjct: 328 IDVTFCENRPYFPVSHLQGENVSEESNSTFEFIEPTPSTVSDVDPHPIILPTNQVPWKTY 387

Query: 61  YRRNLIKEVGSPTSQPPAPVQDFEPPRDQ------------------------------- 120
           YRRNLIKEVGSPTSQPPAPVQDFEPPRDQ                               
Sbjct: 388 YRRNLIKEVGSPTSQPPAPVQDFEPPRDQGMENPTEPCTNNTMSENDRSSVVVLENVEEN 447

Query: 121 ----------EISNDEAEQGHTRKLDEYDPSLDIPIALRKELE 123
                     E S++EAEQGH RKLDEYDPSLDIPIALRKE++
Sbjct: 448 NRGDEIEVRIETSSNEAEQGHIRKLDEYDPSLDIPIALRKEMK 490

[Close]

BLAST of Pay0008734 vs. ExPASy TrEMBL
Match: A0A5D3C7E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00400 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-49
Identity = 105/137 (76.64%), Postives = 109/137 (79.56%), Query Frame = 0


Query: 1   MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTY 60
           MDVTFCENR YF VSHLQGES+SE+S +TFEF EPTPSTVSDVDPHPIILP NQVPWKTY
Sbjct: 461 MDVTFCENRPYFSVSHLQGESMSEESNSTFEFIEPTPSTVSDVDPHPIILPTNQVPWKTY 520

Query: 61  YRRNLIKEVGSPTSQPPAPVQDFEPPRDQ------------------EISNDEAEQGHTR 120
           YRRNL KEVGSPTSQPPA VQDFEPPRDQ                  E SN+E EQGH R
Sbjct: 521 YRRNLRKEVGSPTSQPPASVQDFEPPRDQGMETLQNLNCGDETEVRIETSNNEVEQGHRR 580

[Close]

BLAST of Pay0008734 vs. NCBI nr
Match: KAA0064303.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 230.3 bits (586), Expect = 1.1e-56
Identity = 119/161 (73.91%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 1   MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTY 60
           MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTY
Sbjct: 539 MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTY 598

Query: 61  YRRNLIKEVGSPTSQPPAPVQDFEPPRDQ------------------------------- 120
           YRRNLIKEVGSPTSQPPAPVQDFEPPRDQ                               
Sbjct: 599 YRRNLIKEVGSPTSQPPAPVQDFEPPRDQGMENPTEPCTNNTMSENDKSDVAVLENMEEK 658

[Close]

BLAST of Pay0008734 vs. NCBI nr
Match: KAA0061447.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 3.5e-50
Identity = 105/131 (80.15%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 1    MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTY 60
            MDVTFCENR YFP SHLQGE+VSE+S NTFEF EPT  TVSD+DPHPIILP NQVPWKTY
Sbjct: 915  MDVTFCENRPYFPASHLQGENVSEESNNTFEFIEPTLITVSDIDPHPIILPTNQVPWKTY 974

Query: 61   YRRNLIKEVGSPTSQPPAPVQDFEPPRDQ------------EISNDEAEQGHTRKLDEYD 120
            YRRNL KEVGSPTSQPPAPVQ+FEPPRDQ            E SN EAEQGHTRKLDEYD
Sbjct: 975  YRRNLRKEVGSPTSQPPAPVQNFEPPRDQEKNRDDETEVRIETSNYEAEQGHTRKLDEYD 1034

[Close]

BLAST of Pay0008734 vs. NCBI nr
Match: KAA0054163.1 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 208.4 bits (529), Expect = 4.5e-50
Identity = 108/160 (67.50%), Postives = 113/160 (70.62%), Query Frame = 0


Query: 1   MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTY 60
           MDVTFCE+R YFPVSHLQGESVSE+S NTFEF EPTPSTVSD+DPHPIILP NQVPWKTY
Sbjct: 518 MDVTFCEDRSYFPVSHLQGESVSEESNNTFEFIEPTPSTVSDIDPHPIILPTNQVPWKTY 577

Query: 61  YRRNLIKEVGSPTSQPPAPVQDFEPPRDQ------------------------------- 120
           YRRNLIKEVGSPT+QPPAPVQDFEPPRDQ                               
Sbjct: 578 YRRNLIKEVGSPTNQPPAPVQDFEPPRDQGMENPTEPYTNNTMSENDRSDVAVLENMEEK 637

[Close]

BLAST of Pay0008734 vs. NCBI nr
Match: KAA0037934.1 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK19011.1 Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 1.0e-49
Identity = 108/163 (66.26%), Postives = 116/163 (71.17%), Query Frame = 0


Query: 1   MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTY 60
           +DVTFCENR YFPVSHLQGE+VSE+S +TFEF EPTPSTVSDVDPHPIILP NQVPWKTY
Sbjct: 328 IDVTFCENRPYFPVSHLQGENVSEESNSTFEFIEPTPSTVSDVDPHPIILPTNQVPWKTY 387

Query: 61  YRRNLIKEVGSPTSQPPAPVQDFEPPRDQ------------------------------- 120
           YRRNLIKEVGSPTSQPPAPVQDFEPPRDQ                               
Sbjct: 388 YRRNLIKEVGSPTSQPPAPVQDFEPPRDQGMENPTEPCTNNTMSENDRSSVVVLENVEEN 447

Query: 121 ----------EISNDEAEQGHTRKLDEYDPSLDIPIALRKELE 123
                     E S++EAEQGH RKLDEYDPSLDIPIALRKE++
Sbjct: 448 NRGDEIEVRIETSSNEAEQGHIRKLDEYDPSLDIPIALRKEMK 490

[Close]

BLAST of Pay0008734 vs. NCBI nr
Match: TYK07164.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 206.1 bits (523), Expect = 2.3e-49
Identity = 105/137 (76.64%), Postives = 109/137 (79.56%), Query Frame = 0


Query: 1   MDVTFCENRHYFPVSHLQGESVSEKSYNTFEFTEPTPSTVSDVDPHPIILPANQVPWKTY 60
           MDVTFCENR YF VSHLQGES+SE+S +TFEF EPTPSTVSDVDPHPIILP NQVPWKTY
Sbjct: 461 MDVTFCENRPYFSVSHLQGESMSEESNSTFEFIEPTPSTVSDVDPHPIILPTNQVPWKTY 520

Query: 61  YRRNLIKEVGSPTSQPPAPVQDFEPPRDQ------------------EISNDEAEQGHTR 120
           YRRNL KEVGSPTSQPPA VQDFEPPRDQ                  E SN+E EQGH R
Sbjct: 521 YRRNLRKEVGSPTSQPPASVQDFEPPRDQGMETLQNLNCGDETEVRIETSNNEVEQGHRR 580

The following BLAST results are available for this feature:

BLAST of Pay0008734 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0008734 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V851	5.4e-57	73.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V3J5	1.7e-50	80.15	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00...	[more]
A0A5A7UDS7	2.2e-50	67.50	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5A7T392	4.9e-50	66.26	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5D3C7E4	1.1e-49	76.64	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold60...	[more]

BLAST of Pay0008734 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064303.1	1.1e-56	73.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0061447.1	3.5e-50	80.15	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0054163.1	4.5e-50	67.50	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa]	[more]
KAA0037934.1	1.0e-49	66.26	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa] >T...	[more]
TYK07164.1	2.3e-49	76.64	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Pay0008734 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0008734.1	Pay0008734.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity