Pay0008602 (gene) Melon (Payzawat) v1

Overview


Name	Pay0008602
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	KH domain-containing protein
Location	chr11: 14184683 .. 14186213 (+)
RNA-Seq Expression	Pay0008602
Synteny	Pay0008602

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCATTTACCTTGATTTTGTTAAGTTTCAAGCTAAGGTTCTGAGGTGCTTTCGCACAAAGCTAGGCTAGCTTTTGAGGCGTCACACCAATTTACTTTTGTTTAATCATACATACACTCAAGACTGAACTACCAATTTACTTTTCATTCACAACCCGTCAGCTTATGCCTACCTCACGAATTGGTTGCTTAATTGGTAAAGGTGGAGCTATCATTACCGAGTTGAGAAGGCTCACCAAGGCTAATATTCGAATATTGTCAAAGAAAAACCTCCCAAGGTTGCCTTGGAAGATGATGAAATGGTGCAGATGATTGTTAATTAATTTATTTTCATTTTCATGTCATGATGAACTTTCTTGAATTTTATATTGCTTATGTTGTGTAGGGTTAATTTGATGGTTTTTCTAGTTAGATATCTGGGGATCTTGATGTTGCCAAGGAGGCTCTTGTACATATAGTGACCAGGCTTAGAGCCAAACTTTTTGATAGAGAAGGCGCTCTCTCAATCGTTCTGCCTATTCTGCTGTATTTTCCTCTGTCAGCTGATGGTTCAGATAGTCTAAGCTACGATGGTAGAAAAGGTAAAAGACATGGGCGTGGGCAATCATATTCAAGTGGTTATGGGGGTTTCAATGATTTGGCTGGTGGTGATGGTTATGGAAGCTACGGTGGCTCACAAGTACATATATTAACCTTGACATGTCTGATTATAGCAATGGGGACTGTGGTTCCATCTACTTTTAGAGTTAAAATGCCAGATAAGATTTTCAAACAATTCCACCTTTGCACTTTTAATTGAAGACAATTTTATTTTTTACCTTAATAATTAGTTTGTTCTTTGTAACTGCACTGTTGCTTAAACTTTTCGTATTGAATCAATGCAAAAATTTAATTCTTTGGTAAACTTAGATGATTAGTAAGTACAAGAATGGTGTATGTAATGTAGTGGATTTGCTATAATGAAACATTTGCATTTTACCTTTATTTCATCGTTTGTCTTCATTACACATTGTTTCATATGTTATTACTTAATTGCTATGGTAGTTGTTAAATGTTAATTGTTAGTAGTTTAGTTGTTTAATTTTTATTTGGCTATTATTTTTCTAATTGGTTGAATGCAACTTGCTTTGCTCGTTTAAAGTTGTCATCTCTCTACAATTCTTGACATAATAGTCTTCCCACCCAATAAGCCTTGGCATCATGCACATCCTATCATGATTTCTTTTCTTTTTTCTTTTTTTTTCTTTTTTTGCTCATTAGTTCTAAATGAAGATTTGATTTGTTTGCTATATTATTCATCATATTTAGTTGATAAATTTAAAGTTGTTTGAAAGATATTGATTGTTGTCCAGCCGACAAGATGTGGAATTTGGTCGTCTTTAAATGATGACCTTCAACATATCTAAATGTTTAAATGATGAATAGGAGAAGAAGCCTTGCCAGGATAAAGTTGCTGAGCTAAAAGCAGAGTACGAAAAGGCATTGGAAAGTCAAAGTGATGAGAATGAAGATGTAAGATTTAAGCTCTAA

mRNA sequence

ATGTTCATTTACCTTGATTTTGTTAAGTTTCAAGCTAAGATATCTGGGGATCTTGATGTTGCCAAGGAGGCTCTTGTACATATAGTGACCAGGCTTAGAGCCAAACTTTTTGATAGAGAAGGCGCTCTCTCAATCGTTCTGCCTATTCTGCTGTATTTTCCTCTGTCAGCTGATGGTTCAGATAGTCTAAGCTACGATGGTAGAAAAGGTAAAAGACATGGGCGTGGGCAATCATATTCAAGTGGTTATGGGGGTTTCAATGATTTGGCTGGTGGTGATGGTTATGGAAGCTACGGTGGCTCACAAGAGAAGAAGCCTTGCCAGGATAAAGTTGCTGAGCTAAAAGCAGAGTACGAAAAGGCATTGGAAAGTCAAAGTGATGAGAATGAAGATGTAAGATTTAAGCTCTAA

Coding sequence (CDS)

ATGTTCATTTACCTTGATTTTGTTAAGTTTCAAGCTAAGATATCTGGGGATCTTGATGTTGCCAAGGAGGCTCTTGTACATATAGTGACCAGGCTTAGAGCCAAACTTTTTGATAGAGAAGGCGCTCTCTCAATCGTTCTGCCTATTCTGCTGTATTTTCCTCTGTCAGCTGATGGTTCAGATAGTCTAAGCTACGATGGTAGAAAAGGTAAAAGACATGGGCGTGGGCAATCATATTCAAGTGGTTATGGGGGTTTCAATGATTTGGCTGGTGGTGATGGTTATGGAAGCTACGGTGGCTCACAAGAGAAGAAGCCTTGCCAGGATAAAGTTGCTGAGCTAAAAGCAGAGTACGAAAAGGCATTGGAAAGTCAAAGTGATGAGAATGAAGATGTAAGATTTAAGCTCTAA

Protein sequence

MFIYLDFVKFQAKISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGRKGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQEKKPCQDKVAELKAEYEKALESQSDENEDVRFKL

Homology

[Close]

BLAST of Pay0008602 vs. ExPASy TrEMBL
Match: A0A5D3CC00 (KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00290 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MFIYLDFVKFQAKISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGS 60
           MFIYLDFVKFQAKISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGS
Sbjct: 1   MFIYLDFVKFQAKISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGS 60

Query: 61  DSLSYDGRKGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ 103
           DSLSYDGRKGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ
Sbjct: 61  DSLSYDGRKGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ 102

[Close]

BLAST of Pay0008602 vs. ExPASy TrEMBL
Match: A0A5A7V0G1 (KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00330 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MFIYLDFVKFQAKISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGS 60
           MFIYLDFVKFQAKISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGS
Sbjct: 1   MFIYLDFVKFQAKISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGS 60

Query: 61  DSLSYDGRKGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ 103
           DSLSYDGRKGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ
Sbjct: 61  DSLSYDGRKGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ 102

[Close]

BLAST of Pay0008602 vs. ExPASy TrEMBL
Match: A0A0A0KVM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636640 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.0e-35
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 13  KISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGRKGKR 72
           +ISGDLDVAKEALVHIVTRLRA LFDREGALS VLP+L Y PLSADGSDSLSYDGR+GKR
Sbjct: 482 QISGDLDVAKEALVHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGREGKR 541

Query: 73  HGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ 103
           HGRG SYSSGYGGFNDLAGGDGYGSY GSQ
Sbjct: 542 HGRGHSYSSGYGGFNDLAGGDGYGSYSGSQ 571

[Close]

BLAST of Pay0008602 vs. ExPASy TrEMBL
Match: A0A5A7TBQ7 (KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002780 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 13  KISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGRKGKR 72
           +ISGDLDVAKEAL+HIVTRLRA LFDREGALS VLP+L Y PLSADGSDSLSYDGR+GKR
Sbjct: 422 QISGDLDVAKEALIHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGREGKR 481

Query: 73  HGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ 103
           HGRG SYSSGYGGFNDLAGGDGYGSY GSQ
Sbjct: 482 HGRGHSYSSGYGGFNDLAGGDGYGSYSGSQ 511

[Close]

BLAST of Pay0008602 vs. ExPASy TrEMBL
Match: A0A1S3CA00 (KH domain-containing protein At4g18375 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498494 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 13  KISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGRKGKR 72
           +ISGDLDVAKEAL+HIVTRLRA LFDREGALS VLP+L Y PLSADGSDSLSYDGR+GKR
Sbjct: 422 QISGDLDVAKEALIHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGREGKR 481

Query: 73  HGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ 103
           HGRG SYSSGYGGFNDLAGGDGYGSY GSQ
Sbjct: 482 HGRGHSYSSGYGGFNDLAGGDGYGSYSGSQ 511

[Close]

BLAST of Pay0008602 vs. NCBI nr
Match: KAA0060810.1 (KH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.1 bits (505), Expect = 2.4e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MFIYLDFVKFQAKISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGS 60
           MFIYLDFVKFQAKISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGS
Sbjct: 1   MFIYLDFVKFQAKISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGS 60

Query: 61  DSLSYDGRKGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ 103
           DSLSYDGRKGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ
Sbjct: 61  DSLSYDGRKGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ 102

[Close]

BLAST of Pay0008602 vs. NCBI nr
Match: TYK08822.1 (KH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.1 bits (505), Expect = 2.4e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MFIYLDFVKFQAKISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGS 60
           MFIYLDFVKFQAKISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGS
Sbjct: 1   MFIYLDFVKFQAKISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGS 60

Query: 61  DSLSYDGRKGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ 103
           DSLSYDGRKGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ
Sbjct: 61  DSLSYDGRKGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ 102

[Close]

BLAST of Pay0008602 vs. NCBI nr
Match: XP_011655998.1 (KH domain-containing protein HEN4 [Cucumis sativus] >KAE8648927.1 hypothetical protein Csa_008610 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-35
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 13  KISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGRKGKR 72
           +ISGDLDVAKEALVHIVTRLRA LFDREGALS VLP+L Y PLSADGSDSLSYDGR+GKR
Sbjct: 422 QISGDLDVAKEALVHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGREGKR 481

Query: 73  HGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ 103
           HGRG SYSSGYGGFNDLAGGDGYGSY GSQ
Sbjct: 482 HGRGHSYSSGYGGFNDLAGGDGYGSYSGSQ 511

[Close]

BLAST of Pay0008602 vs. NCBI nr
Match: XP_008459330.1 (PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 2.8e-35
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 13  KISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGRKGKR 72
           +ISGDLDVAKEAL+HIVTRLRA LFDREGALS VLP+L Y PLSADGSDSLSYDGR+GKR
Sbjct: 422 QISGDLDVAKEALIHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGREGKR 481

Query: 73  HGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ 103
           HGRG SYSSGYGGFNDLAGGDGYGSY GSQ
Sbjct: 482 HGRGHSYSSGYGGFNDLAGGDGYGSYSGSQ 511

[Close]

BLAST of Pay0008602 vs. NCBI nr
Match: KAA0039466.1 (KH domain-containing protein [Cucumis melo var. makuwa] >TYK00656.1 KH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 2.8e-35
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 13  KISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGRKGKR 72
           +ISGDLDVAKEAL+HIVTRLRA LFDREGALS VLP+L Y PLSADGSDSLSYDGR+GKR
Sbjct: 422 QISGDLDVAKEALIHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGREGKR 481

Query: 73  HGRGQSYSSGYGGFNDLAGGDGYGSYGGSQ 103
           HGRG SYSSGYGGFNDLAGGDGYGSY GSQ
Sbjct: 482 HGRGHSYSSGYGGFNDLAGGDGYGSYSGSQ 511

[Close]

BLAST of Pay0008602 vs. TAIR 10
Match: AT5G15270.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 82.4 bits (202), Expect = 3.0e-16
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 13  KISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGRKGKR 72
           +ISG+LDVAKEAL+ I +RLRA +FDREGA+S ++P+L Y P++ D  D   YD R  +R
Sbjct: 423 QISGELDVAKEALIQITSRLRANVFDREGAVSALMPVLPYVPVAPDAGDRFDYDSRDSRR 482

Query: 73  HGRGQSYSSGYGGFNDLAGGDGYGSYG 100
             RG  Y  GYG        +GY  YG
Sbjct: 483 LERGNPYPGGYGSSG--VSAEGYSPYG 507

[Close]

BLAST of Pay0008602 vs. TAIR 10
Match: AT5G15270.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 82.4 bits (202), Expect = 3.0e-16
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 13  KISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGRKGKR 72
           +ISG+LDVAKEAL+ I +RLRA +FDREGA+S ++P+L Y P++ D  D   YD R  +R
Sbjct: 423 QISGELDVAKEALIQITSRLRANVFDREGAVSALMPVLPYVPVAPDAGDRFDYDSRDSRR 482

Query: 73  HGRGQSYSSGYGGFNDLAGGDGYGSYG 100
             RG  Y  GYG        +GY  YG
Sbjct: 483 LERGNPYPGGYGSSG--VSAEGYSPYG 507

The following BLAST results are available for this feature:

BLAST of Pay0008602 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0008602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CC00	1.2e-47	100.00	KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7V0G1	1.2e-47	100.00	KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A0A0KVM1	1.0e-35	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636640 PE=4 SV=1	[more]
A0A5A7TBQ7	1.3e-35	88.89	KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3CA00	1.3e-35	88.89	KH domain-containing protein At4g18375 isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of Pay0008602 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060810.1	2.4e-47	100.00	KH domain-containing protein [Cucumis melo var. makuwa]	[more]
TYK08822.1	2.4e-47	100.00	KH domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_011655998.1	2.1e-35	90.00	KH domain-containing protein HEN4 [Cucumis sativus] >KAE8648927.1 hypothetical p...	[more]
XP_008459330.1	2.8e-35	88.89	PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Cucumis melo]	[more]
KAA0039466.1	2.8e-35	88.89	KH domain-containing protein [Cucumis melo var. makuwa] >TYK00656.1 KH domain-co...	[more]

BLAST of Pay0008602 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15270.2	3.0e-16	49.43	RNA-binding KH domain-containing protein	[more]
AT5G15270.1	3.0e-16	49.43	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..83
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 13..78
None	No IPR available	PANTHER	PTHR10288:SF243	RNA-BINDING KH DOMAIN-CONTAINING PROTEIN	coord: 13..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0008602.1	Pay0008602.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding