Pay0008521 (gene) Melon (Payzawat) v1

Overview


Name	Pay0008521
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	protein STAY-GREEN LIKE, chloroplastic
Location	chr11: 18370155 .. 18370435 (-)
RNA-Seq Expression	Pay0008521
Synteny	Pay0008521

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTTGTTCAACGCACCTTGATAACATGTGTACCGGTAAACTTGAGGACATGTTAACAAAAAATTCATTGAATACTTGATCTAGACAACATGATATCTATCTCTTGTCAATCTTCTTCTTTTTTTTTTTTTTTTTTTCTGTCCTTGTTTTTCAGGGGAGGCATCATCATATTCAAGGACTCCTAAGCGGAAGCAAGGATGTGTCCTCTTCTAAAAAGTTGAGAAGCCCCAAATCAATATTTCAAGCTCTCTTTGCTTTCCTTCTCTGGATTGCATAA

mRNA sequence

ATGGGTGTTGTTCAACGCACCTTGATAACATGTGTACCGGGGAGGCATCATCATATTCAAGGACTCCTAAGCGGAAGCAAGGATGTGTCCTCTTCTAAAAAGTTGAGAAGCCCCAAATCAATATTTCAAGCTCTCTTTGCTTTCCTTCTCTGGATTGCATAA

Coding sequence (CDS)

ATGGGTGTTGTTCAACGCACCTTGATAACATGTGTACCGGGGAGGCATCATCATATTCAAGGACTCCTAAGCGGAAGCAAGGATGTGTCCTCTTCTAAAAAGTTGAGAAGCCCCAAATCAATATTTCAAGCTCTCTTTGCTTTCCTTCTCTGGATTGCATAA

Protein sequence

MGVVQRTLITCVPGRHHHIQGLLSGSKDVSSSKKLRSPKSIFQALFAFLLWIA

Homology

[Close]

BLAST of Pay0008521 vs. ExPASy TrEMBL
Match: A0A5D3DJN5 (Protein STAY-GREEN LIKE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G001140 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-10
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 12  VPGRHHHIQGLLSGSKDVSSSKKLRSPKSIFQALFAFLL 51
           V GRHHHIQGLL+GSKDVSS+KKLRSPKSIFQALFAFLL
Sbjct: 199 VLGRHHHIQGLLNGSKDVSSTKKLRSPKSIFQALFAFLL 237

[Close]

BLAST of Pay0008521 vs. ExPASy TrEMBL
Match: A0A1S4DTT3 (protein STAY-GREEN LIKE, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485669 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-10
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 12  VPGRHHHIQGLLSGSKDVSSSKKLRSPKSIFQALFAFLL 51
           V GRHHHIQGLL+GSKDVSS+KKLRSPKSIFQALFAFLL
Sbjct: 175 VLGRHHHIQGLLNGSKDVSSTKKLRSPKSIFQALFAFLL 213

[Close]

BLAST of Pay0008521 vs. ExPASy TrEMBL
Match: A0A0A0KGP2 (Staygreen domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G349840 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-10
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 12  VPGRHHHIQGLLSGSKDVSSSKKLRSPKSIFQALFAFLL 51
           V GRHHH+QGLLSGSKDVS SKKLRSPKSIFQALFAFLL
Sbjct: 206 VLGRHHHMQGLLSGSKDVSPSKKLRSPKSIFQALFAFLL 244

[Close]

BLAST of Pay0008521 vs. ExPASy TrEMBL
Match: A0A6J1CHX2 (protein STAY-GREEN LIKE, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011794 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.2e-09
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 12  VPGRHHHIQGLLSGSKDVSSSKKLRSPKSIFQALFAFLL 51
           V GRHHH+QGLL GSKD+SS KKLRSPKSIFQALFAFLL
Sbjct: 206 VLGRHHHMQGLLRGSKDMSSPKKLRSPKSIFQALFAFLL 244

[Close]

BLAST of Pay0008521 vs. ExPASy TrEMBL
Match: A0A6J1JL65 (protein STAY-GREEN LIKE, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486879 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-08
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 12  VPGRHHHIQGLLSGSKDVSSSKKLRSPKSIFQALFAFLL 51
           V GRHHH+QGLL  S+DVSS KKLR+PKSIFQALFAFLL
Sbjct: 206 VQGRHHHMQGLLRASQDVSSPKKLRTPKSIFQALFAFLL 244

[Close]

BLAST of Pay0008521 vs. NCBI nr
Match: TYK23787.1 (protein STAY-GREEN LIKE [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 4.5e-10
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 12  VPGRHHHIQGLLSGSKDVSSSKKLRSPKSIFQALFAFLL 51
           V GRHHHIQGLL+GSKDVSS+KKLRSPKSIFQALFAFLL
Sbjct: 199 VLGRHHHIQGLLNGSKDVSSTKKLRSPKSIFQALFAFLL 237

[Close]

BLAST of Pay0008521 vs. NCBI nr
Match: XP_016899407.1 (PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 4.5e-10
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 12  VPGRHHHIQGLLSGSKDVSSSKKLRSPKSIFQALFAFLL 51
           V GRHHHIQGLL+GSKDVSS+KKLRSPKSIFQALFAFLL
Sbjct: 175 VLGRHHHIQGLLNGSKDVSSTKKLRSPKSIFQALFAFLL 213

[Close]

BLAST of Pay0008521 vs. NCBI nr
Match: XP_004144252.1 (magnesium dechelatase SGRL, chloroplastic [Cucumis sativus] >KGN47507.1 hypothetical protein Csa_019065 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 7.7e-10
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 12  VPGRHHHIQGLLSGSKDVSSSKKLRSPKSIFQALFAFLL 51
           V GRHHH+QGLLSGSKDVS SKKLRSPKSIFQALFAFLL
Sbjct: 206 VLGRHHHMQGLLSGSKDVSPSKKLRSPKSIFQALFAFLL 244

[Close]

BLAST of Pay0008521 vs. NCBI nr
Match: XP_038884235.1 (magnesium dechelatase SGRL, chloroplastic [Benincasa hispida])

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 12  VPGRHHHIQGLLSGSKDVSSSKKLRSPKSIFQALFAFLL 51
           V GRHHH+QGLL GSKDVSS KKLRSPKSIFQALFAFLL
Sbjct: 206 VLGRHHHVQGLLRGSKDVSSPKKLRSPKSIFQALFAFLL 244

[Close]

BLAST of Pay0008521 vs. NCBI nr
Match: XP_022141380.1 (protein STAY-GREEN LIKE, chloroplastic [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 6.5e-09
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 12  VPGRHHHIQGLLSGSKDVSSSKKLRSPKSIFQALFAFLL 51
           V GRHHH+QGLL GSKD+SS KKLRSPKSIFQALFAFLL
Sbjct: 206 VLGRHHHMQGLLRGSKDMSSPKKLRSPKSIFQALFAFLL 244

The following BLAST results are available for this feature:

BLAST of Pay0008521 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0008521 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJN5	2.2e-10	92.31	Protein STAY-GREEN LIKE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DTT3	2.2e-10	92.31	protein STAY-GREEN LIKE, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485669 P...	[more]
A0A0A0KGP2	3.7e-10	92.31	Staygreen domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G349840 P...	[more]
A0A6J1CHX2	3.2e-09	87.18	protein STAY-GREEN LIKE, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1JL65	2.7e-08	82.05	protein STAY-GREEN LIKE, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of Pay0008521 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23787.1	4.5e-10	92.31	protein STAY-GREEN LIKE [Cucumis melo var. makuwa]	[more]
XP_016899407.1	4.5e-10	92.31	PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Cucumis melo]	[more]
XP_004144252.1	7.7e-10	92.31	magnesium dechelatase SGRL, chloroplastic [Cucumis sativus] >KGN47507.1 hypothet...	[more]
XP_038884235.1	1.7e-09	89.74	magnesium dechelatase SGRL, chloroplastic [Benincasa hispida]	[more]
XP_022141380.1	6.5e-09	87.18	protein STAY-GREEN LIKE, chloroplastic [Momordica charantia]	[more]

BLAST of Pay0008521 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0008521.1	Pay0008521.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
cellular_component	GO:0016021	integral component of membrane