Pay0008157 (gene) Melon (Payzawat) v1

Overview


Name	Pay0008157
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Gag/pol protein
Location	chr03: 5814166 .. 5814621 (-)
RNA-Seq Expression	Pay0008157
Synteny	Pay0008157

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAATATCCTTCTTTCCTTATTCAAAATATATTCCAGACTGTCAAGGATGCATATGACTGCTTGACAAAGGCCAATGACAAGGTCCAAGTCTACATCTTGGCTAGTATGTCTAACTTATTGAGCAAGAAAAACGAGACCATGGTCGCTGCTTGTCAGATCATGGACTTTCTCCTAGAGATGTTTGGACAACCGTCCATTCAGATGAGGCAAGAGGATATTAAACACGTTTATAATGTACATATGAATGAGGGTCAATCTGTTAAGGAACATGTTCTCGACATGATAGTTCACTTCAACATAGTAGAAATCAACGGAGCGGTCTTTGATGAAAAGAGTCAAGTGTCCTTTATCTTAAAATCTCTTCCCAAGAGCTTCCTTCAATTTCGCAGCAATGTGATAATGAACAAGATAGAGTATAACATGGCTACTGCTTGTTTGTGTCAAACTTAG

mRNA sequence

ATGGAGGAATATCCTTCTTTCCTTATTCAAAATATATTCCAGACTGTCAAGGATGCATATGACTGCTTGACAAAGGCCAATGACAAGGTCCAAGTCTACATCTTGGCTAGTATGTCTAACTTATTGAGCAAGAAAAACGAGACCATGGTCGCTGCTTGTCAGATCATGGACTTTCTCCTAGAGATGTTTGGACAACCGTCCATTCAGATGAGGCAAGAGGATATTAAACACGTTTATAATGTACATATGAATGAGGGTCAATCTGTTAAGGAACATGTTCTCGACATGATAGTTCACTTCAACATAGTAGAAATCAACGGAGCGGTCTTTGATGAAAAGAGTCAAGTGTCCTTTATCTTAAAATCTCTTCCCAAGAGCTTCCTTCAATTTCGCAGCAATGTGATAATGAACAAGATAGAGTATAACATGGCTACTGCTTGTTTGTGTCAAACTTAG

Coding sequence (CDS)

ATGGAGGAATATCCTTCTTTCCTTATTCAAAATATATTCCAGACTGTCAAGGATGCATATGACTGCTTGACAAAGGCCAATGACAAGGTCCAAGTCTACATCTTGGCTAGTATGTCTAACTTATTGAGCAAGAAAAACGAGACCATGGTCGCTGCTTGTCAGATCATGGACTTTCTCCTAGAGATGTTTGGACAACCGTCCATTCAGATGAGGCAAGAGGATATTAAACACGTTTATAATGTACATATGAATGAGGGTCAATCTGTTAAGGAACATGTTCTCGACATGATAGTTCACTTCAACATAGTAGAAATCAACGGAGCGGTCTTTGATGAAAAGAGTCAAGTGTCCTTTATCTTAAAATCTCTTCCCAAGAGCTTCCTTCAATTTCGCAGCAATGTGATAATGAACAAGATAGAGTATAACATGGCTACTGCTTGTTTGTGTCAAACTTAG

Protein sequence

MEEYPSFLIQNIFQTVKDAYDCLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLLEMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVHFNIVEINGAVFDEKSQVSFILKSLPKSFLQFRSNVIMNKIEYNMATACLCQT

Homology

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BLAST of Pay0008157 vs. ExPASy TrEMBL
Match: A0A5D3DJY1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00190 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.3e-75
Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MEEYPSFLIQNIFQTVKDAYDCLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLL 60
           MEEYPSFLIQNIFQTVKDAYD LTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFL 
Sbjct: 13  MEEYPSFLIQNIFQTVKDAYDYLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLR 72

Query: 61  EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVHFNIVEINGAVFDEKSQVSFIL 120
           EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIV+FNIVEINGAVFDEKSQVSFIL
Sbjct: 73  EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVYFNIVEINGAVFDEKSQVSFIL 132

Query: 121 KSLPKSFLQFRSNVIMNKIEYNMATACLCQT 152
           KSLPKSFLQFRSNVIMNKIEYNMATACLCQT
Sbjct: 133 KSLPKSFLQFRSNVIMNKIEYNMATACLCQT 163

[Close]

BLAST of Pay0008157 vs. ExPASy TrEMBL
Match: A0A1S3B4J9 (uncharacterized protein LOC103485734 OS=Cucumis melo OX=3656 GN=LOC103485734 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.3e-75
Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MEEYPSFLIQNIFQTVKDAYDCLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLL 60
           MEEYPSFLIQNIFQTVKDAYD LTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFL 
Sbjct: 1   MEEYPSFLIQNIFQTVKDAYDYLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLR 60

Query: 61  EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVHFNIVEINGAVFDEKSQVSFIL 120
           EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIV+FNIVEINGAVFDEKSQVSFIL
Sbjct: 61  EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVYFNIVEINGAVFDEKSQVSFIL 120

Query: 121 KSLPKSFLQFRSNVIMNKIEYNMATACLCQT 152
           KSLPKSFLQFRSNVIMNKIEYNMATACLCQT
Sbjct: 121 KSLPKSFLQFRSNVIMNKIEYNMATACLCQT 151

[Close]

BLAST of Pay0008157 vs. ExPASy TrEMBL
Match: A0A5D3DDU7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G00010 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.1e-50
Identity = 104/145 (71.72%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 1   MEEYPSFLIQNIFQTVKDAYDCLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLL 60
           M+E P F  QN  Q+VKD YD  TKANDK +VYILASMS++LSKK+E MV ACQIMD L 
Sbjct: 50  MDECPPFPTQNASQSVKDTYDRWTKANDKARVYILASMSDILSKKHEIMVTACQIMDSLR 109

Query: 61  EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVHFNIVEINGAVFDEKSQVSFIL 120
           EMFGQ SIQ++Q+ IK+VYN HM EGQSV++HV+DMIVHFN+ E+NG VFDEKSQ+SFIL
Sbjct: 110 EMFGQSSIQIKQDAIKYVYNAHMKEGQSVRDHVIDMIVHFNVAEMNGVVFDEKSQMSFIL 169

Query: 121 KSLPKSFLQFRSNVIMNKIEYNMAT 146
           KSLPKSFLQF SN  MNKI YNM T
Sbjct: 170 KSLPKSFLQFPSNAEMNKINYNMTT 194

[Close]

BLAST of Pay0008157 vs. ExPASy TrEMBL
Match: A0A5D3CLL2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001530 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.0e-49
Identity = 103/145 (71.03%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 1   MEEYPSFLIQNIFQTVKDAYDCLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLL 60
           MEEYP F  QN  ++V DAYD  TK NDK ++YILASMS++LSKK+E MV   QI+DFL 
Sbjct: 1   MEEYPPFSTQNASRSVWDAYDHWTKTNDKARLYILASMSDILSKKHEIMVTTHQIIDFLR 60

Query: 61  EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVHFNIVEINGAVFDEKSQVSFIL 120
           EMFGQPSIQ+ QE IK++YN HM EGQS++EHVLDMI  FN+ E+NGAVFDEKSQVS+IL
Sbjct: 61  EMFGQPSIQIIQETIKYIYNAHMKEGQSIREHVLDMIFKFNVAEMNGAVFDEKSQVSYIL 120

Query: 121 KSLPKSFLQFRSNVIMNKIEYNMAT 146
           KSLPKSFLQFRSN  +NKIEYNM T
Sbjct: 121 KSLPKSFLQFRSNAKINKIEYNMTT 145

[Close]

BLAST of Pay0008157 vs. ExPASy TrEMBL
Match: A0A5A7TJT4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00100 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.9e-47
Identity = 102/145 (70.34%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MEEYPSFLIQNIFQTVKDAYDCLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLL 60
           MEE   F  QN  Q VKDAYDC TK NDK ++YILASMS++LSKK+E MV A QIMD   
Sbjct: 13  MEECSPFPTQNASQGVKDAYDCWTKVNDKARLYILASMSDILSKKHEIMVTARQIMDSFR 72

Query: 61  EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVHFNIVEINGAVFDEKSQVSFIL 120
           EMFGQPSIQ++QE IK+VYN  M EGQSV EHVLD+I++FN+VE+NG VFDEKSQVS+IL
Sbjct: 73  EMFGQPSIQIKQEAIKYVYNARMKEGQSVTEHVLDIIINFNVVEMNGKVFDEKSQVSYIL 132

Query: 121 KSLPKSFLQFRSNVIMNKIEYNMAT 146
           KSL KSFLQFRSN  +NKI+YNM T
Sbjct: 133 KSLSKSFLQFRSNTEINKIDYNMTT 157

[Close]

BLAST of Pay0008157 vs. NCBI nr
Match: KAA0058920.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK23710.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MEEYPSFLIQNIFQTVKDAYDCLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLL 60
           MEEYPSFLIQNIFQTVKDAYD LTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFL 
Sbjct: 13  MEEYPSFLIQNIFQTVKDAYDYLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLR 72

Query: 61  EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVHFNIVEINGAVFDEKSQVSFIL 120
           EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIV+FNIVEINGAVFDEKSQVSFIL
Sbjct: 73  EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVYFNIVEINGAVFDEKSQVSFIL 132

Query: 121 KSLPKSFLQFRSNVIMNKIEYNMATACLCQT 152
           KSLPKSFLQFRSNVIMNKIEYNMATACLCQT
Sbjct: 133 KSLPKSFLQFRSNVIMNKIEYNMATACLCQT 163

[Close]

BLAST of Pay0008157 vs. NCBI nr
Match: XP_008441651.1 (PREDICTED: uncharacterized protein LOC103485734 [Cucumis melo])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MEEYPSFLIQNIFQTVKDAYDCLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLL 60
           MEEYPSFLIQNIFQTVKDAYD LTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFL 
Sbjct: 1   MEEYPSFLIQNIFQTVKDAYDYLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLR 60

Query: 61  EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVHFNIVEINGAVFDEKSQVSFIL 120
           EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIV+FNIVEINGAVFDEKSQVSFIL
Sbjct: 61  EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVYFNIVEINGAVFDEKSQVSFIL 120

Query: 121 KSLPKSFLQFRSNVIMNKIEYNMATACLCQT 152
           KSLPKSFLQFRSNVIMNKIEYNMATACLCQT
Sbjct: 121 KSLPKSFLQFRSNVIMNKIEYNMATACLCQT 151

[Close]

BLAST of Pay0008157 vs. NCBI nr
Match: TYK21841.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-49
Identity = 104/145 (71.72%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 1   MEEYPSFLIQNIFQTVKDAYDCLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLL 60
           M+E P F  QN  Q+VKD YD  TKANDK +VYILASMS++LSKK+E MV ACQIMD L 
Sbjct: 50  MDECPPFPTQNASQSVKDTYDRWTKANDKARVYILASMSDILSKKHEIMVTACQIMDSLR 109

Query: 61  EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVHFNIVEINGAVFDEKSQVSFIL 120
           EMFGQ SIQ++Q+ IK+VYN HM EGQSV++HV+DMIVHFN+ E+NG VFDEKSQ+SFIL
Sbjct: 110 EMFGQSSIQIKQDAIKYVYNAHMKEGQSVRDHVIDMIVHFNVAEMNGVVFDEKSQMSFIL 169

Query: 121 KSLPKSFLQFRSNVIMNKIEYNMAT 146
           KSLPKSFLQF SN  MNKI YNM T
Sbjct: 170 KSLPKSFLQFPSNAEMNKINYNMTT 194

[Close]

BLAST of Pay0008157 vs. NCBI nr
Match: KAA0049670.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK12202.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 8.3e-49
Identity = 103/145 (71.03%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 1   MEEYPSFLIQNIFQTVKDAYDCLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLL 60
           MEEYP F  QN  ++V DAYD  TK NDK ++YILASMS++LSKK+E MV   QI+DFL 
Sbjct: 1   MEEYPPFSTQNASRSVWDAYDHWTKTNDKARLYILASMSDILSKKHEIMVTTHQIIDFLR 60

Query: 61  EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVHFNIVEINGAVFDEKSQVSFIL 120
           EMFGQPSIQ+ QE IK++YN HM EGQS++EHVLDMI  FN+ E+NGAVFDEKSQVS+IL
Sbjct: 61  EMFGQPSIQIIQETIKYIYNAHMKEGQSIREHVLDMIFKFNVAEMNGAVFDEKSQVSYIL 120

Query: 121 KSLPKSFLQFRSNVIMNKIEYNMAT 146
           KSLPKSFLQFRSN  +NKIEYNM T
Sbjct: 121 KSLPKSFLQFRSNAKINKIEYNMTT 145

[Close]

BLAST of Pay0008157 vs. NCBI nr
Match: KAA0041821.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK05343.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 5.9e-47
Identity = 102/145 (70.34%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MEEYPSFLIQNIFQTVKDAYDCLTKANDKVQVYILASMSNLLSKKNETMVAACQIMDFLL 60
           MEE   F  QN  Q VKDAYDC TK NDK ++YILASMS++LSKK+E MV A QIMD   
Sbjct: 13  MEECSPFPTQNASQGVKDAYDCWTKVNDKARLYILASMSDILSKKHEIMVTARQIMDSFR 72

Query: 61  EMFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVHFNIVEINGAVFDEKSQVSFIL 120
           EMFGQPSIQ++QE IK+VYN  M EGQSV EHVLD+I++FN+VE+NG VFDEKSQVS+IL
Sbjct: 73  EMFGQPSIQIKQEAIKYVYNARMKEGQSVTEHVLDIIINFNVVEMNGKVFDEKSQVSYIL 132

Query: 121 KSLPKSFLQFRSNVIMNKIEYNMAT 146
           KSL KSFLQFRSN  +NKI+YNM T
Sbjct: 133 KSLSKSFLQFRSNTEINKIDYNMTT 157

The following BLAST results are available for this feature:

BLAST of Pay0008157 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0008157 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJY1	7.3e-75	98.01	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G001...	[more]
A0A1S3B4J9	7.3e-75	98.01	uncharacterized protein LOC103485734 OS=Cucumis melo OX=3656 GN=LOC103485734 PE=...	[more]
A0A5D3DDU7	8.1e-50	71.72	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G000...	[more]
A0A5D3CLL2	4.0e-49	71.03	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G0015...	[more]
A0A5A7TJT4	2.9e-47	70.34	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00100...	[more]

BLAST of Pay0008157 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058920.1	1.5e-74	98.01	gag/pol protein [Cucumis melo var. makuwa] >TYK23710.1 gag/pol protein [Cucumis ...	[more]
XP_008441651.1	1.5e-74	98.01	PREDICTED: uncharacterized protein LOC103485734 [Cucumis melo]	[more]
TYK21841.1	1.7e-49	71.72	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0049670.1	8.3e-49	71.03	gag/pol protein [Cucumis melo var. makuwa] >TYK12202.1 gag/pol protein [Cucumis ...	[more]
KAA0041821.1	5.9e-47	70.34	gag/pol protein [Cucumis melo var. makuwa] >TYK05343.1 gag/pol protein [Cucumis ...	[more]

BLAST of Pay0008157 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 25..145 e-value: 4.2E-13 score: 49.2
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 17..142
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 17..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0008157.1	Pay0008157.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding