Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCATAAGTAAAGAGAGAGGTGGAACAAGATTCAAAGACTTCAAAGTTCTTAATCAAGCTATGCTTGCGAAGTAAAGTTAGCGTTTATGTAGAAATGATGATAGTCTTGTAGGTAGAGTTCTAGAAGGGAGGTACTTCCCCGAGGGATCTTTTCTTAAGGCTTCTCTTGGAAAGAACACTTTGTTCACATGGAGACGTATTTTATGAGGTAGAAGTCTATTTGAGAAAAGTGTTATATGAAGGATTGGTAATGGTAGACACATCATTGTTGATGAAGATAAATGGATTCCCCAGGAAGGTTTAGGAGGCTTGGTGCTGGTTTGTGAAGATCTTAAGAAAATGAGAGTTTTGAATCTTATTGATTTCGATGGAAATTGGGATGAAGAGTTGATAATATCTTATTTTATCAAGTTCGCTTATGTTTCTATCATCAATATTCCCCTTGAGAATCCCAAATCAAAGGATGATATTTTTTGGGGTTCTGATCCTAAAGACAACTTTTTGGTGAAAAGTGTGTATCGCATTGCAATTGATGGTAAAGATTCCTTTGAGGCCTCTTCATCAAATCGAAAGAATCAAAATAAGAGATGCAAAGCTATTTGGAGCTCAAAAGCACTCCCTAAAGCGAAAATTTGGGTCTGGAGAATTTGAAAATATGTTATTCCCTCCAAGTCGAATTTATGGAGGAGAGAAATTACTAGCTATCCTTTTTGTCTCTTTTGCATGAATTTCGAAGAGATCGTTGTGCCTATTATCTAG
mRNA sequence
ATGTGCATAAGTAAAGAGAGAGGTGGAACAAGATTCAAAGACTTCAAAGTTCTTAATCAAGCTATGCTTGCGAATCTTGTAGGTAGAGTTCTAGAAGGGAGGTACTTCCCCGAGGGATCTTTTCTTAAGGCTTCTCTTGGAAAGAACACTTTGATTGGTAATGGTAGACACATCATTGTTGATGAAGATAAATGGATTCCCCAGGAAGGTTTAGGAGGCTTGGTGCTGGTTTGTGAAGATCTTAAGAAAATGAGAGTTTTGAATCTTATTGATTTCGATGGAAATTGGGATGAAGAGTTGATAATATCTTATTTTATCAAGTTCGCTTATGTTTCTATCATCAATATTCCCCTTGAGAATCCCAAATCAAAGGATGATATTTTTTGGGGTTCTGATCCTAAAGACAACTTTTTGGTGAAAAGTGTGTATCGCATTGCAATTGATGGTAAAGATTCCTTTGAGGCCTCTTCATCAAATCGAAAGAATCAAAATAAGAGATGCAAAGCTATTTGGAGCTCAAAAGCACTCCCTAAAGCGAAAATTTGGTCGAATTTATGGAGGAGAGAAATTACTAGCTATCCTTTTTGTCTCTTTTGCATGAATTTCGAAGAGATCGTTGTGCCTATTATCTAG
Coding sequence (CDS)
ATGTGCATAAGTAAAGAGAGAGGTGGAACAAGATTCAAAGACTTCAAAGTTCTTAATCAAGCTATGCTTGCGAATCTTGTAGGTAGAGTTCTAGAAGGGAGGTACTTCCCCGAGGGATCTTTTCTTAAGGCTTCTCTTGGAAAGAACACTTTGATTGGTAATGGTAGACACATCATTGTTGATGAAGATAAATGGATTCCCCAGGAAGGTTTAGGAGGCTTGGTGCTGGTTTGTGAAGATCTTAAGAAAATGAGAGTTTTGAATCTTATTGATTTCGATGGAAATTGGGATGAAGAGTTGATAATATCTTATTTTATCAAGTTCGCTTATGTTTCTATCATCAATATTCCCCTTGAGAATCCCAAATCAAAGGATGATATTTTTTGGGGTTCTGATCCTAAAGACAACTTTTTGGTGAAAAGTGTGTATCGCATTGCAATTGATGGTAAAGATTCCTTTGAGGCCTCTTCATCAAATCGAAAGAATCAAAATAAGAGATGCAAAGCTATTTGGAGCTCAAAAGCACTCCCTAAAGCGAAAATTTGGTCGAATTTATGGAGGAGAGAAATTACTAGCTATCCTTTTTGTCTCTTTTGCATGAATTTCGAAGAGATCGTTGTGCCTATTATCTAG
Protein sequence
MCISKERGGTRFKDFKVLNQAMLANLVGRVLEGRYFPEGSFLKASLGKNTLIGNGRHIIVDEDKWIPQEGLGGLVLVCEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLENPKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSNRKNQNKRCKAIWSSKALPKAKIWSNLWRREITSYPFCLFCMNFEEIVVPII
Homology
BLAST of Pay0008141 vs. ExPASy TrEMBL
Match:
A0A5A7SLW3 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00010 PE=4 SV=1)
HSP 1 Score: 298.5 bits (763), Expect = 2.2e-77
Identity = 152/187 (81.28%), Postives = 154/187 (82.35%), Query Frame = 0
Query: 1 MCISKERGGTRFKDFKVLNQAMLANLVGRVLEGRYFPEGSFLKASLGKNTLIGNGRHIIV 60
MCISKERGGTRFKDFKVLNQAMLA +HIIV
Sbjct: 1 MCISKERGGTRFKDFKVLNQAMLA-------------------------------KHIIV 60
Query: 61 DEDKWIPQEGLGGLVLVCEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLEN 120
DEDKWIPQEGLGGLVLVCEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLEN
Sbjct: 61 DEDKWIPQEGLGGLVLVCEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLEN 120
Query: 121 PKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSNRKNQNKRCKAIWSSKALPKAK 180
PKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSNRKNQNKRCKAIWSSKALPKAK
Sbjct: 121 PKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSNRKNQNKRCKAIWSSKALPKAK 154
Query: 181 IWSNLWR 188
IW +WR
Sbjct: 181 IW--VWR 154
BLAST of Pay0008141 vs. ExPASy TrEMBL
Match:
A0A5D3CC28 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1411G00130 PE=4 SV=1)
HSP 1 Score: 244.6 bits (623), Expect = 3.7e-61
Identity = 125/159 (78.62%), Postives = 127/159 (79.87%), Query Frame = 0
Query: 1 MCISKERGGTRFKDFKVLNQAMLANLVGRVLEGRYFPEGSFLKASLGKNTLIGNGRHIIV 60
MCISKERGGTRFKDFKVLNQAMLA +HIIV
Sbjct: 1 MCISKERGGTRFKDFKVLNQAMLA-------------------------------KHIIV 60
Query: 61 DEDKWIPQEGLGGLVLVCEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLEN 120
D+DKWIPQEGLGGLVLV EDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLEN
Sbjct: 61 DDDKWIPQEGLGGLVLVYEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLEN 120
Query: 121 PKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSN 160
PKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSN
Sbjct: 121 PKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSN 128
BLAST of Pay0008141 vs. ExPASy TrEMBL
Match:
A0A2N9EC60 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4438 PE=4 SV=1)
HSP 1 Score: 103.6 bits (257), Expect = 1.0e-18
Identity = 81/244 (33.20%), Postives = 111/244 (45.49%), Query Frame = 0
Query: 1 MCISKERGGTRFKDFKVLNQAMLA-----------NLVGRVLEGRYFPEGSFLKASLGKN 60
MC+ KE+GG F+D NQAMLA +LV RV + +YFP+ S ++A+LG N
Sbjct: 594 MCMPKEKGGMGFRDLYSFNQAMLAKQGWRFLQDQHSLVYRVYKAKYFPKCSLMEANLGTN 653
Query: 61 -------------TL-------IGNGRHIIVDEDKWIPQEGLGGLVLVCEDLKKMRVLNL 120
TL +G+GR I V DKW+P G ++ + V +L
Sbjct: 654 PSFIWRSLLKGRDTLVKGIKWKVGDGRSINVWRDKWLPVTPGGQQ----DENSGLLVRDL 713
Query: 121 IDFDGN-WDEELIISYFIKFAYVSIINIPLENPKSKDDIFWGSDPKDNFLVKSVYRIAID 180
ID D N W+EELI F + +I I L N SKD FWG F V S Y + +
Sbjct: 714 IDEDRNWWNEELIDMVFDRRIATAIKRIQLVNMHSKDQPFWGETSTGEFSVSSAYEMLLK 773
Query: 181 GKDS-FEASSSNRKNQNKRCKAIWSSKALPKAK--IW----------SNLWRREITSYPF 200
+ S A SSN + +W + K K +W NL+RR+I +
Sbjct: 774 EESSPLSAESSNAGEIRDTWRKVWKLRIPGKVKHFLWRACSEALPTNHNLYRRKIINNQL 833
BLAST of Pay0008141 vs. ExPASy TrEMBL
Match:
B8BN96 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_37529 PE=4 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 67/214 (31.31%), Postives = 98/214 (45.79%), Query Frame = 0
Query: 5 KERGGTRFKDFKVLNQAMLA-----------NLVGRVLEGRYFPEGSFLKASLGKNT--- 64
K GG F+D+++ NQA+LA +L RVL+ +YFP GS + S G N+
Sbjct: 1305 KSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPA 1364
Query: 65 -----------------LIGNGRHIIVDEDKWIPQEGLGGLVLVCEDLKKMRVLNLIDFD 124
+GNG I + D W+P++ + + + V +LI D
Sbjct: 1365 WRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSRRPITGKANCRLKWVSDLITED 1424
Query: 125 GNWDEELIISYFIKFAYVSIINIPLENPKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSF 184
G+WD I YF I+NI + + +D I W D F V+S YR+A +
Sbjct: 1425 GSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIE 1484
Query: 185 EASSSNRKNQNKRCKAIWSSKALPKAKIWSNLWR 188
E+SSS N NK + IW K K KI++ WR
Sbjct: 1485 ESSSSGTNNINKAWEMIWKCKVPQKVKIFA--WR 1516
BLAST of Pay0008141 vs. ExPASy TrEMBL
Match:
Q0IPZ9 (Os12g0156200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0156200 PE=4 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 67/214 (31.31%), Postives = 98/214 (45.79%), Query Frame = 0
Query: 5 KERGGTRFKDFKVLNQAMLA-----------NLVGRVLEGRYFPEGSFLKASLGKNT--- 64
K GG F+D+++ NQA+LA +L RVL+ +YFP GS + S G N+
Sbjct: 979 KSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPA 1038
Query: 65 -----------------LIGNGRHIIVDEDKWIPQEGLGGLVLVCEDLKKMRVLNLIDFD 124
+GNG I + D W+P++ + + + V +LI D
Sbjct: 1039 WRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSRRPITGKANCRLKWVSDLITED 1098
Query: 125 GNWDEELIISYFIKFAYVSIINIPLENPKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSF 184
G+WD I YF I+NI + + +D I W D F V+S YR+A +
Sbjct: 1099 GSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIE 1158
Query: 185 EASSSNRKNQNKRCKAIWSSKALPKAKIWSNLWR 188
E+SSS N NK + IW K K KI++ WR
Sbjct: 1159 ESSSSGTNNINKAWEMIWKCKVPQKVKIFA--WR 1190
BLAST of Pay0008141 vs. NCBI nr
Match:
KAA0031740.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])
HSP 1 Score: 298.5 bits (763), Expect = 4.5e-77
Identity = 152/187 (81.28%), Postives = 154/187 (82.35%), Query Frame = 0
Query: 1 MCISKERGGTRFKDFKVLNQAMLANLVGRVLEGRYFPEGSFLKASLGKNTLIGNGRHIIV 60
MCISKERGGTRFKDFKVLNQAMLA +HIIV
Sbjct: 1 MCISKERGGTRFKDFKVLNQAMLA-------------------------------KHIIV 60
Query: 61 DEDKWIPQEGLGGLVLVCEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLEN 120
DEDKWIPQEGLGGLVLVCEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLEN
Sbjct: 61 DEDKWIPQEGLGGLVLVCEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLEN 120
Query: 121 PKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSNRKNQNKRCKAIWSSKALPKAK 180
PKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSNRKNQNKRCKAIWSSKALPKAK
Sbjct: 121 PKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSNRKNQNKRCKAIWSSKALPKAK 154
Query: 181 IWSNLWR 188
IW +WR
Sbjct: 181 IW--VWR 154
BLAST of Pay0008141 vs. NCBI nr
Match:
TYK08890.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])
HSP 1 Score: 244.6 bits (623), Expect = 7.7e-61
Identity = 125/159 (78.62%), Postives = 127/159 (79.87%), Query Frame = 0
Query: 1 MCISKERGGTRFKDFKVLNQAMLANLVGRVLEGRYFPEGSFLKASLGKNTLIGNGRHIIV 60
MCISKERGGTRFKDFKVLNQAMLA +HIIV
Sbjct: 1 MCISKERGGTRFKDFKVLNQAMLA-------------------------------KHIIV 60
Query: 61 DEDKWIPQEGLGGLVLVCEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLEN 120
D+DKWIPQEGLGGLVLV EDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLEN
Sbjct: 61 DDDKWIPQEGLGGLVLVYEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLEN 120
Query: 121 PKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSN 160
PKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSN
Sbjct: 121 PKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSN 128
BLAST of Pay0008141 vs. NCBI nr
Match:
XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis])
HSP 1 Score: 107.8 bits (268), Expect = 1.1e-19
Identity = 71/239 (29.71%), Postives = 107/239 (44.77%), Query Frame = 0
Query: 4 SKERGGTRFKDFKVLNQAMLA-----------NLVGRVLEGRYFPEGSFLKASLGKNT-- 63
+K RGG F++F NQA++A +LV RVL+ RYF SFL A G N
Sbjct: 882 AKIRGGLGFREFSCFNQALVAKQAWRLLQYPNSLVSRVLQARYFRNSSFLCAKAGANASY 941
Query: 64 ------------------LIGNGRHIIVDEDKWIPQEGLGGLVLVCEDLKKMRVLNLIDF 123
IGNG+ I + D W+P+ + V +LI
Sbjct: 942 IWRSIMWGRQVIKKGMRWRIGNGKKIAIFSDNWLPRPETFRPIFPLSLPVSSVVADLIKA 1001
Query: 124 DGNWDEELIISYFIKFAYVSIINIPLENPKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDS 183
D WDE + +F+ I+ IPL K++D++ W D + N+ VKS Y++A+ K
Sbjct: 1002 DNQWDEIKLRQHFLDVDTAEILKIPLPAEKAEDEVLWHYDKRGNYSVKSGYQLALRSK-- 1061
Query: 184 FEASSSNRKNQNKRCKAIWSSKALPKAKIW------------SNLWRREITSYPFCLFC 200
F S+S + +K A+W+ + K KI+ NLW+R++ P C C
Sbjct: 1062 FPDSTSCTEASHKYWSALWTLELPEKLKIFMWRASNNLLPSAENLWKRKVVEEPTCKRC 1118
BLAST of Pay0008141 vs. NCBI nr
Match:
XP_025877668.1 (uncharacterized protein LOC4351546 [Oryza sativa Japonica Group] >ABA96496.2 retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group] >BAF29216.2 Os12g0156200 [Oryza sativa Japonica Group])
HSP 1 Score: 103.2 bits (256), Expect = 2.8e-18
Identity = 67/214 (31.31%), Postives = 98/214 (45.79%), Query Frame = 0
Query: 5 KERGGTRFKDFKVLNQAMLA-----------NLVGRVLEGRYFPEGSFLKASLGKNT--- 64
K GG F+D+++ NQA+LA +L RVL+ +YFP GS + S G N+
Sbjct: 979 KSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPA 1038
Query: 65 -----------------LIGNGRHIIVDEDKWIPQEGLGGLVLVCEDLKKMRVLNLIDFD 124
+GNG I + D W+P++ + + + V +LI D
Sbjct: 1039 WRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSRRPITGKANCRLKWVSDLITED 1098
Query: 125 GNWDEELIISYFIKFAYVSIINIPLENPKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSF 184
G+WD I YF I+NI + + +D I W D F V+S YR+A +
Sbjct: 1099 GSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIE 1158
Query: 185 EASSSNRKNQNKRCKAIWSSKALPKAKIWSNLWR 188
E+SSS N NK + IW K K KI++ WR
Sbjct: 1159 ESSSSGTNNINKAWEMIWKCKVPQKVKIFA--WR 1190
BLAST of Pay0008141 vs. NCBI nr
Match:
AAQ19327.1 (bZIP-like protein [Oryza sativa Japonica Group] >KAB8116658.1 hypothetical protein EE612_057881 [Oryza sativa])
HSP 1 Score: 103.2 bits (256), Expect = 2.8e-18
Identity = 67/214 (31.31%), Postives = 98/214 (45.79%), Query Frame = 0
Query: 5 KERGGTRFKDFKVLNQAMLA-----------NLVGRVLEGRYFPEGSFLKASLGKNT--- 64
K GG F+D+++ NQA+LA +L RVL+ +YFP GS + S G N+
Sbjct: 1582 KSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPA 1641
Query: 65 -----------------LIGNGRHIIVDEDKWIPQEGLGGLVLVCEDLKKMRVLNLIDFD 124
+GNG I + D W+P++ + + + V +LI D
Sbjct: 1642 WRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSRRPITGKANCRLKWVSDLITED 1701
Query: 125 GNWDEELIISYFIKFAYVSIINIPLENPKSKDDIFWGSDPKDNFLVKSVYRIAIDGKDSF 184
G+WD I YF I+NI + + +D I W D F V+S YR+A +
Sbjct: 1702 GSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIE 1761
Query: 185 EASSSNRKNQNKRCKAIWSSKALPKAKIWSNLWR 188
E+SSS N NK + IW K K KI++ WR
Sbjct: 1762 ESSSSGTNNINKAWEMIWKCKVPQKVKIFA--WR 1793
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SLW3 | 2.2e-77 | 81.28 | Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1... | [more] |
| A0A5D3CC28 | 3.7e-61 | 78.62 | Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1... | [more] |
| A0A2N9EC60 | 1.0e-18 | 33.20 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
| B8BN96 | 1.3e-18 | 31.31 | Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX... | [more] |
| Q0IPZ9 | 1.3e-18 | 31.31 | Os12g0156200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0156200 PE... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0031740.1 | 4.5e-77 | 81.28 | retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa] | [more] |
| TYK08890.1 | 7.7e-61 | 78.62 | retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa] | [more] |
| XP_024950112.1 | 1.1e-19 | 29.71 | uncharacterized protein LOC112496847 [Citrus sinensis] | [more] |
| XP_025877668.1 | 2.8e-18 | 31.31 | uncharacterized protein LOC4351546 [Oryza sativa Japonica Group] >ABA96496.2 ret... | [more] |
| AAQ19327.1 | 2.8e-18 | 31.31 | bZIP-like protein [Oryza sativa Japonica Group] >KAB8116658.1 hypothetical prote... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
