Pay0007994 (gene) Melon (Payzawat) v1

Overview


Name	Pay0007994
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA polymerase epsilon catalytic subunit A-like
Location	chr09: 7306396 .. 7307997 (-)
RNA-Seq Expression	Pay0007994
Synteny	Pay0007994

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAATCAGATGAGGAGTAGTGTAAACCGAAGGCGAGACTTCACAGTCAACTATAAGTGGAAGAAGAAAAGGATAATCCAGTCAGTTGAAGAGGAGGTTGAATCAAAGTTTGGATTCAATCTCTTCTCTGAAGGCGACAAGAGGCTGGGATGGTTGCTCACTTTCACTCCTGTAAGCGACCTGTGTAACTAGCTCCGTTCCATAACAATTTGGTTACTGACTTTCTGTTTTAAAAAATTAAGTTTATAAGCATTACTTCTACCAATAAGTTTCTATATTTTCTTTATAAGAAGCAAATTTCATTGATGTATGAAATTTTTAAAATGAAGGGAATAAGCCCAATCAAGGAGTTACAAAAGAGTTATCCAATTTGTCAAAAGATTAGTAATGTAGATTATATTAAAAAATGATCAGAAGAGAACCGTAGGGGAAGGGGTTGAGACTACCCCAAAGAGCTAGTGAATAAGAGCCTTCCGATTATTATAAATCATAGATAGATATTTTTTTACAAAAGTATTTGGTGTAATTTATGCACCACCAAGAAGCTCTGTGCTGAACAACAGTCCAAAAAGAATCAAAGGAAACAAACTTATCTTCAAAAGAGCTTCCCTTTTCATTGAATAGACTGCCGGTATGTCCCTTCCATGAAATCCATATGAAAGCATCCACATAATCCTCTTTTCATTAGTGAAGGGGTGGGCGGTGAAAGTATATGAGAGAAGACTAATATGCGTTAAAAGTTCTTATTGTTAGCAAAACGAGGAAGTTGATCTCATTTAGAAATTGATTATCTTACTCTATTAGTTTTGGGGAACAAAACAAGAGAATAATAGCCTGACAAAAAGCGTGGTCCAAATCTCGATGGGAAGAGCAGTGGACTAGCCAGAGGAGGATGATATCTCCTTCAAAAATCTCTGCAAATTGACAGTTAGAAATTTTTATTTCTTAACGAAGTACTCAAATGAAAACATTGACTAGGGATTCAAATGTTCATTCAAGTGTTTCATTGAGAAAAATGAGAATCATAATTGAAAAATTAGGATGAAACGAACATAAATTTGACAAACAGAAAACTAAATGAAATTGTTATCAAACGGAGGAGCTTGAGTCACAAGAGTTAACTCTGTGGATATATGTATATTTCCAAACAAGTAATACAAGTTAAACTTTCATTGAAGTTCATTGTGTAATTGTAGAATATATTTATCAGGCCATGATACTCAAACAGAATACATCATTAATATTTTATTCAAAATTGACAATTTGCAGTCATCTTGCAAGAATGAGGACACTGAAAAAATCTTCAGTTGCATCGATCTTTATTTTGTACACAGGTGAAAATGGCTTAACATAAATGTTTTTGATTGCATGGAACCAATGAATTCAAACTGTAACTATTTTTTTTTTTTTGTTTGGTACAGGATGGCGGCAGTTTCAAATCAAAATATAAGTTTTGTCCTTATTTTTATGCAGCCACAAAAGTATGTAATCACATACAGAAGCCTTGTTTGCTTTTTATGGTTATATCATGTTTTGGTACTATGTATTGACAATGAGGAGAATAATGATGTAAATGTTGTAGAAAAAAATGGAAACTGA

mRNA sequence

ATGACCAATCAGATGAGGAGTAGTGTAAACCGAAGGCGAGACTTCACAGTCAACTATAAGTGGAAGAAGAAAAGGATAATCCAGTCAGTTGAAGAGGAGGTTGAATCAAAGTTTGGATTCAATCTCTTCTCTGAAGGCGACAAGAGGCTGGGATGGTTGCTCACTTTCACTCCTTCATCTTGCAAGAATGAGGACACTGAAAAAATCTTCAGTTGCATCGATCTTTATTTTGTACACAGGATGGCGGCAGTTTCAAATCAAAATATAAGTTTTGTCCTTATTTTTATGCAGCCACAAAAGTATGTAATCACATACAGAAGCCTTGTTTGCTTTTTATGGTTATATCATGTTTTGGTACTATGTATTGACAATGAGGAGAATAATGATGTAAATGTTGTAGAAAAAAATGGAAACTGA

Coding sequence (CDS)

ATGACCAATCAGATGAGGAGTAGTGTAAACCGAAGGCGAGACTTCACAGTCAACTATAAGTGGAAGAAGAAAAGGATAATCCAGTCAGTTGAAGAGGAGGTTGAATCAAAGTTTGGATTCAATCTCTTCTCTGAAGGCGACAAGAGGCTGGGATGGTTGCTCACTTTCACTCCTTCATCTTGCAAGAATGAGGACACTGAAAAAATCTTCAGTTGCATCGATCTTTATTTTGTACACAGGATGGCGGCAGTTTCAAATCAAAATATAAGTTTTGTCCTTATTTTTATGCAGCCACAAAAGTATGTAATCACATACAGAAGCCTTGTTTGCTTTTTATGGTTATATCATGTTTTGGTACTATGTATTGACAATGAGGAGAATAATGATGTAAATGTTGTAGAAAAAAATGGAAACTGA

Protein sequence

MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSSCKNEDTEKIFSCIDLYFVHRMAAVSNQNISFVLIFMQPQKYVITYRSLVCFLWLYHVLVLCIDNEENNDVNVVEKNGN

Homology

[Close]

BLAST of Pay0007994 vs. ExPASy Swiss-Prot
Match: F4HW04 (DNA polymerase epsilon catalytic subunit A OS=Arabidopsis thaliana OX=3702 GN=POL2A PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.9e-16
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 7  SSVNRRRDFTVNYKWKKK-RIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSSCKNED 66
          S  NRRRD   + +W KK +++ + E+E+ESK GF LFSEG+ RLGWLLTF+ SS ++ D
Sbjct: 2  SGDNRRRD-RKDTRWSKKPKVVNTAEDELESKLGFGLFSEGETRLGWLLTFSSSSWEDRD 61

Query: 67 TEKIFSCIDLYFV 79
          T K++SC+DLYFV
Sbjct: 62 TGKVYSCVDLYFV 73

[Close]

BLAST of Pay0007994 vs. ExPASy Swiss-Prot
Match: F4IFN6 (DNA polymerase epsilon catalytic subunit B OS=Arabidopsis thaliana OX=3702 GN=POL2B PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-11
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 29 SVEEEVESKFGFNLFSEGDKRLGWLLTFTPSSCKNEDTEKIFSCIDLYFV 79
          S  +E+E+K GF LFS+G+ RLGWLLTF  SS ++ DT K FSC+DL+FV
Sbjct: 16 SAADELETKLGFGLFSQGETRLGWLLTFASSSWEDADTGKTFSCVDLFFV 65

[Close]

BLAST of Pay0007994 vs. ExPASy TrEMBL
Match: A0A1S3CPC4 (DNA polymerase epsilon catalytic subunit A-like OS=Cucumis melo OX=3656 GN=LOC103503308 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.1e-72
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSS 60
           MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSS
Sbjct: 1   MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSS 60

Query: 61  CKNEDTEKIFSCIDLYFVHRMAAVSNQNISFVLIFMQPQKYVITYRSLVCFLWLYHVLVL 120
           CKNEDTEKIFSCIDLYFVHRMAAVSNQNISFVLIFMQPQKYVITYRSLVCFLWLYHVLVL
Sbjct: 61  CKNEDTEKIFSCIDLYFVHRMAAVSNQNISFVLIFMQPQKYVITYRSLVCFLWLYHVLVL 120

Query: 121 CIDNEENNDVNVVEKNGN 139
           CIDNEENNDVNVVEKNGN
Sbjct: 121 CIDNEENNDVNVVEKNGN 138

[Close]

BLAST of Pay0007994 vs. ExPASy TrEMBL
Match: A0A5A7TAW8 (DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001810 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.6e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSS 60
          MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSS
Sbjct: 1  MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSS 60

Query: 61 CKNEDTEKIFSCIDLYF 78
          CKNEDTEKIFSCIDLYF
Sbjct: 61 CKNEDTEKIFSCIDLYF 77

[Close]

BLAST of Pay0007994 vs. ExPASy TrEMBL
Match: A0A5D3C5I4 (DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001080 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.3e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTP 59
          MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTP
Sbjct: 1  MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTP 58

[Close]

BLAST of Pay0007994 vs. ExPASy TrEMBL
Match: A0A6J1C732 (DNA polymerase epsilon catalytic subunit OS=Momordica charantia OX=3673 GN=LOC111008850 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-19
Identity = 52/79 (65.82%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 2  TNQMRSSVNRRRDFTVNYKWKKKRIIQS--VEEEVESKFGFNLFSEGDKRLGWLLTFTPS 61
          T  + +S +RRR+ T N+K KK+RI++S   EEE+ESKFGF LFSEGDKRLGWLLTF PS
Sbjct: 17 TCNITNSESRRRNLTDNHKSKKQRIVESATAEEEIESKFGFGLFSEGDKRLGWLLTFAPS 76

Query: 62 SCKNEDTEKIFSCIDLYFV 79
          S K++DT K++SCIDLYFV
Sbjct: 77 SRKDQDTGKVYSCIDLYFV 95

[Close]

BLAST of Pay0007994 vs. ExPASy TrEMBL
Match: A0A6J1C6H8 (DNA polymerase epsilon catalytic subunit OS=Momordica charantia OX=3673 GN=LOC111008850 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-19
Identity = 52/79 (65.82%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 2  TNQMRSSVNRRRDFTVNYKWKKKRIIQS--VEEEVESKFGFNLFSEGDKRLGWLLTFTPS 61
          T  + +S +RRR+ T N+K KK+RI++S   EEE+ESKFGF LFSEGDKRLGWLLTF PS
Sbjct: 17 TCNITNSESRRRNLTDNHKSKKQRIVESATAEEEIESKFGFGLFSEGDKRLGWLLTFAPS 76

Query: 62 SCKNEDTEKIFSCIDLYFV 79
          S K++DT K++SCIDLYFV
Sbjct: 77 SRKDQDTGKVYSCIDLYFV 95

[Close]

BLAST of Pay0007994 vs. NCBI nr
Match: XP_008465670.1 (PREDICTED: DNA polymerase epsilon catalytic subunit A-like [Cucumis melo])

HSP 1 Score: 280.8 bits (717), Expect = 6.4e-72
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSS 60
           MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSS
Sbjct: 1   MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSS 60

Query: 61  CKNEDTEKIFSCIDLYFVHRMAAVSNQNISFVLIFMQPQKYVITYRSLVCFLWLYHVLVL 120
           CKNEDTEKIFSCIDLYFVHRMAAVSNQNISFVLIFMQPQKYVITYRSLVCFLWLYHVLVL
Sbjct: 61  CKNEDTEKIFSCIDLYFVHRMAAVSNQNISFVLIFMQPQKYVITYRSLVCFLWLYHVLVL 120

Query: 121 CIDNEENNDVNVVEKNGN 139
           CIDNEENNDVNVVEKNGN
Sbjct: 121 CIDNEENNDVNVVEKNGN 138

[Close]

BLAST of Pay0007994 vs. NCBI nr
Match: KAA0040604.1 (DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 9.6e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSS 60
          MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSS
Sbjct: 1  MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSS 60

Query: 61 CKNEDTEKIFSCIDLYF 78
          CKNEDTEKIFSCIDLYF
Sbjct: 61 CKNEDTEKIFSCIDLYF 77

[Close]

BLAST of Pay0007994 vs. NCBI nr
Match: TYK05646.1 (DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTP 59
          MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTP
Sbjct: 1  MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTP 58

[Close]

BLAST of Pay0007994 vs. NCBI nr
Match: XP_022137385.1 (DNA polymerase epsilon catalytic subunit A-like isoform X2 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 4.8e-19
Identity = 52/79 (65.82%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 2  TNQMRSSVNRRRDFTVNYKWKKKRIIQS--VEEEVESKFGFNLFSEGDKRLGWLLTFTPS 61
          T  + +S +RRR+ T N+K KK+RI++S   EEE+ESKFGF LFSEGDKRLGWLLTF PS
Sbjct: 17 TCNITNSESRRRNLTDNHKSKKQRIVESATAEEEIESKFGFGLFSEGDKRLGWLLTFAPS 76

Query: 62 SCKNEDTEKIFSCIDLYFV 79
          S K++DT K++SCIDLYFV
Sbjct: 77 SRKDQDTGKVYSCIDLYFV 95

[Close]

BLAST of Pay0007994 vs. NCBI nr
Match: XP_022137384.1 (DNA polymerase epsilon catalytic subunit A-like isoform X1 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 4.8e-19
Identity = 52/79 (65.82%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 2  TNQMRSSVNRRRDFTVNYKWKKKRIIQS--VEEEVESKFGFNLFSEGDKRLGWLLTFTPS 61
          T  + +S +RRR+ T N+K KK+RI++S   EEE+ESKFGF LFSEGDKRLGWLLTF PS
Sbjct: 17 TCNITNSESRRRNLTDNHKSKKQRIVESATAEEEIESKFGFGLFSEGDKRLGWLLTFAPS 76

Query: 62 SCKNEDTEKIFSCIDLYFV 79
          S K++DT K++SCIDLYFV
Sbjct: 77 SRKDQDTGKVYSCIDLYFV 95

[Close]

BLAST of Pay0007994 vs. TAIR 10
Match: AT1G08260.1 (DNA polymerase epsilon catalytic subunit )

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-17
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 7  SSVNRRRDFTVNYKWKKK-RIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPSSCKNED 66
          S  NRRRD   + +W KK +++ + E+E+ESK GF LFSEG+ RLGWLLTF+ SS ++ D
Sbjct: 2  SGDNRRRD-RKDTRWSKKPKVVNTAEDELESKLGFGLFSEGETRLGWLLTFSSSSWEDRD 61

Query: 67 TEKIFSCIDLYFV 79
          T K++SC+DLYFV
Sbjct: 62 TGKVYSCVDLYFV 73

[Close]

BLAST of Pay0007994 vs. TAIR 10
Match: AT2G27120.1 (DNA polymerase epsilon catalytic subunit )

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-12
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 29 SVEEEVESKFGFNLFSEGDKRLGWLLTFTPSSCKNEDTEKIFSCIDLYFV 79
          S  +E+E+K GF LFS+G+ RLGWLLTF  SS ++ DT K FSC+DL+FV
Sbjct: 16 SAADELETKLGFGLFSQGETRLGWLLTFASSSWEDADTGKTFSCVDLFFV 65

The following BLAST results are available for this feature:

BLAST of Pay0007994 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HW04	3.9e-16	56.16	DNA polymerase epsilon catalytic subunit A OS=Arabidopsis thaliana OX=3702 GN=PO...	[more]
F4IFN6	5.0e-11	60.00	DNA polymerase epsilon catalytic subunit B OS=Arabidopsis thaliana OX=3702 GN=PO...	[more]

BLAST of Pay0007994 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CPC4	3.1e-72	100.00	DNA polymerase epsilon catalytic subunit A-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7TAW8	4.6e-36	100.00	DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C5I4	5.3e-24	100.00	DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1C732	2.3e-19	65.82	DNA polymerase epsilon catalytic subunit OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1C6H8	2.3e-19	65.82	DNA polymerase epsilon catalytic subunit OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of Pay0007994 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465670.1	6.4e-72	100.00	PREDICTED: DNA polymerase epsilon catalytic subunit A-like [Cucumis melo]	[more]
KAA0040604.1	9.6e-36	100.00	DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa]	[more]
TYK05646.1	1.1e-23	100.00	DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa]	[more]
XP_022137385.1	4.8e-19	65.82	DNA polymerase epsilon catalytic subunit A-like isoform X2 [Momordica charantia]	[more]
XP_022137384.1	4.8e-19	65.82	DNA polymerase epsilon catalytic subunit A-like isoform X1 [Momordica charantia]	[more]

BLAST of Pay0007994 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08260.1	2.8e-17	56.16	DNA polymerase epsilon catalytic subunit	[more]
AT2G27120.1	3.5e-12	60.00	DNA polymerase epsilon catalytic subunit	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0007994.1	Pay0007994.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0008622	epsilon DNA polymerase complex
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008270	zinc ion binding