Pay0007554 (gene) Melon (Payzawat) v1

Overview


Name	Pay0007554
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 6A-like
Location	chr04: 3238899 .. 3243201 (-)
RNA-Seq Expression	Pay0007554
Synteny	Pay0007554

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGATAGCGCACTGTACTTCATACGAGGGAGCAATCATCAATCATAAACGCAGCCGTAGGAAGGTCACTGGGAAAGAGAAAAAAGAACTCTTAAAACCCTTCCCTCTCTCTTTCTCCTTCGTCAAACCCTATTCCTCTCGAAAATATTTCTCAAGGGTTTTGAATCCCAGTCGAGACCCAGGGTTTTCCACAGACCAACAGTTTTTCTATCCATCATCAATGGCGGACGACGATTACAATGACCTTGACATGGGGTTCTCTCTCTCTCTGTCCTTTATGTTTTTTCTCCAATCTATCTTATGTTGTTCCTCTGCTCAACTGGTTTCTTAGAAAATTTGTCAAATGCAAAACCCTAATCTCGTTCTTTCAGTTTCAATTCATAATGGATTTATAGGCCTCTTGCTGCATGTGCATCCACATGAAATCTTCATTAGCAACGTCCACGAATTACTGAGTGAGAATTATCAGTTCTTCGAAGGAGGCTTCTATTCGCTTTATTCCCTGTTTTTTATGCCCTCTTTTATTTTGCATCAAACACTCAGCCCTGCTTCTAGAATACAGACTGCTGTACCAGCTTTATTTATTTTGTCTGTTAATTTAGTCACTGAGATACCATGGGTCAGTGCTTTGCAATTTGCATCACGTTTTTCTTTATTTTTGTTAATGAGTTTTATTAGTTGTGCAAAATGCACACATGGAAAGCAGATAGATGGAATATAGTTGTAAAAATTATGCACGAGGATTTGAATTCCAACTCTTGGGCCTATGCACAGTGATTTGTTATTTGAATTGGATATACTAATATTTCATTGTTAGTTGTTGTTTTGACCACACTGCCCACTGGTATTATCTTGGTTTGTGAAAGGCCTTTATATTTTCATTTAGGATGATTTGAAGGTGCAAATATCTTTCAGCTCTTATATTAATAAAAGGGTTTTTGCTGCAGATACGAAGATGAGCCACCAGAACCTGAGATTGAGGTAAAAAATAATTATTTCAGTTATTTTTGAAAGAAGTGCACTACTGATCTTTTTGCAGTTGATTAATTATAGTGAAACTGTGAATGATGTATAGGAAGGTGCTGAAGAAGAATTGGATACTAACAATGATGATGTTCCTGGTGAACCCGTTGAAGCGGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACTAAGTATGAACGTGCTAGAATTTTGGGTACACGCGCCCTCCAAATCAGGTTCTATTTTTTTGACATTTGTTTCGTCTAATTTTTGCATTCATCAAGTTTGTAAATGATTTGATGATTCTTTTTCTTCTTGAGCAGCATGAATGCTCCTGTGATGGTTGAATTGGAGGGTGAGACTGATCCACTTGAGGTTAGATTTTGAAATGTCAAGCTAATCTTTGAAAAGCTCTCTTATGGTTTTTGCATTCAGTAGATGTATTTTAGTTGCCCCATATGTCCCATATGTTTATGACGGTTGGTATGCGTATGCATACATGGAAGTAAAAGGTTAACTTACGATCCTACAAAATTGCAAGTTGGGGGTTGAAATGAAGTTTTTCAAATAATCAATTTTTTAAAAAGCTGAAGAGGCTTTTGTATCGAGGCAAGGCTCTAAAGTTTAATATCTTCGTTCAACCATAAGAGGGTTATGCCTTTCATAGAAGAAGTTTATGTCTTTGTGAAAGCTCATCTTCTCTTAGAAGTTTGTGTCTTTGTGAAAGTTCATTCTCTCTTAGAAGAAGTTCGTCTTTGTGAAAGCTCATCGAGACTGAAAATCTCTAGGCCTCGTCTAGTAGTTAATCTATCATACTAATGATACTATTATTATAGAACCCGAATATATTGAAAGAGTAAAGATGAATGATAATGAAAATACAAGATGAATCAAGTGTTCGAGGTACTTGGACTCTCCCAATCTTGAGATACTCTCGAGCCCTACGTCTTATACTGAAATATTCCTCACCTTCTCCATTTCTCTCCCCTTTATTTATAGCCAACTTCCCTAACATACTCCTGAACTAATTCCTAATATACCCATAATATTCCTTTAACACCATCATATCCTTATTGGGCCTAAAACACCCCATGTCATCAAGTTGTGGGTACCAAACCTTTTTTGTAGCCTTGGAATTAAAGTGGGCTTCAAACAATTCCTTTGAGCTCAATATGCATCCCACAGACAAAAACCATTTGCCTCTGATTTTCCAACATTTGGTCCACCACCCAGATCTGACACGTAGGCATCGGTTAGTTTGTGCATCTCTTCATGCAAATTGCTTCTTTCTCAAGATTCACGTAATCTGCCCCTTCCCCATGATTGCTTCTCCAGCCACCGTAGATCAACATTTTTTATGTGATCAGTTGCATCTAACTCCATGGAATCGAACAATTCTGATATGATACCAAATTGATAGAATTCAAATATATTGAAAGATGAATGATAATAAAAATTCAAGATAAACCAAGTGTTTGAGGTACTTGGACCCTCCTAATCTTAAGATACTCTCAAGCTGTACTTTGTATTCCAAAATATTGCTTATCTTCTCCATTCCCCTCCCCTCTATTTATAAACAACTTCCCTAACTCCTTTCTAATTACAAATATATCCTTAATGTTCCTAAAATGCCAATCCTATCATATTAAAGATATCTTTTCAGAATTATCTATCAAGTCAAAATGTGAGGTTATTTTATTTATTTAGTTTCTTATCAACACTTTTATGAGTATAATAATACTGCAATATTTAGTCATACTAATTTAGAATTTGTAAAATGTTGCCTTTAGCCTTTTAAAACATTGCAAAAAGTAGGGTATAATTGAAATGAACTTCAAGTTTAAAGGTAATTTGTATGCAGATTTTGTTTACTGTTTCAAATTTTCAACTAACCCATGATGAACCAAGATAATTTGTTTGATGCATTCACGAGTTTCGTTTACTTAATTGCTAAAACTGGTAGTACTGTTTACTGTTTGTATTTAATAGCTAATGCTTTTCTATTATTCTTGTAGATGTCAATTTCATGCTTTTCCATTATTCTCTTACATGTCAATTCTCATCTAATACTGTGCTGTCTTAGATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCTTTCACCATCCGTCGTTACTTGCCAGATGGAAGGTTAGATCTGCTTCTTAGATGTCTTTTATCTTTAATGTTCGGAATGGATTCATCTGCTTAGCAAGGGTGTGAGGTGTGCAACTAAGGTCCCGTTTGGTAACCATTTCACTTTTTGTTTTTGGTTTTTGAAAATTAAGTCTATTTCTTCTGTTTCTTATTATGATTTGCATCCAAGTACAATGGTTGAATTTTTTAGCCAAATTCTAAAATTAAAAACAAATTTTTAATAACTATTTTTCTTTTTAGTTTTCAGTTCTTGGCTTGGTTTTTAAAACCAGGTGAAAGTAGTACCTATACGCTTAATTTCAAAAAAACAAAAAAAGAACAAAAATAAGAAAATAAAGTGGTTACAAAACGGGCCTAAGTTTGCGTTTGATAACCATTTGTATTTTTGAAATTAAGTTTATAAAACATTACTGATGTTTATAGAAATTCAGAGCTAAAAGAGGTGTTTGTTTAATTTCCAAAAACTCTACTAAAAAATCAAATAATTACTAAGCATGGCCTTTGTTTCTAGTTTTAAAATTTGGTTAAGTATTGAAATGTTTAATTAGAAAATATGAAAACTACGATAAAGAAGTCGTAACAAAAGACACACGATTTTAAAAAACCAAAAACCAAATGGTTCAAATGTTGTTTTCAAATGAGGTCTAAGCGTTCCTAACTCGTTTGGTTTCTATAACTCTAGTCTTAGTTTGTTTCTAAAAGAACCTTAATACTTTCCTGCAATAATAAGAGCTAAAATGCTTAACAAGCGAAATTTGGTTATGTTAATTTTGAGCAGTTATGAAGACTGGGGCGTTGATGAACTGATTGTGGAAGACTCTTGGAAGAGGCAAGTTGGTGGTGCTTGAATTTTGATGTTCTTGTGAGATAATAGCTTCTGTTAATTGCATAGCCGATCTGTTCGCTCCTTTAATCAACTTGTGAGTGTCTTGGTTGTTGCATAACTAATCTATAATATTGGAATGAAATCACTTTTGAGAACCAAACATTTCTTGTTAGTTCACGACTAAACATGCCATTAACACTTGAATAACCTCCATTAGCCAAAAACTTTATGTCTTAATTGCTCTTTCTGACTTCTAAAGAAGAATACAAATTTGTTTGAAAAAGATTTAAAAGTACTTCTGTTGTG

mRNA sequence

ATGAAATTGATAGCGCACTGTACTTCATACGAGGGAGCAATCATCAATCATAAACGCAGCCGTAGGAAGGTCACTGGGAAAGAGAAAAAAGAACTCTTAAAACCCTTCCCTCTCTCTTTCTCCTTCGTCAAACCCTATTCCTCTCGAAAATATTTCTCAAGGGTTTTGAATCCCAGTCGAGACCCAGGGTTTTCCACAGACCAACAGTTTTTCTATCCATCATCAATGGCGGACGACGATTACAATGACCTTGACATGGGATACGAAGATGAGCCACCAGAACCTGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATACTAACAATGATGATGTTCCTGGTGAACCCGTTGAAGCGGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACTAAGTATGAACGTGCTAGAATTTTGGGTACACGCGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTTGAATTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCTTTCACCATCCGTCGTTACTTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAACTGATTGTGGAAGACTCTTGGAAGAGGCAAGTTGGTGGTGCTTGAATTTTGATGTTCTTGTGAGATAATAGCTTCTGTTAATTGCATAGCCGATCTGTTCGCTCCTTTAATCAACTTGTGAGTGTCTTGGTTGTTGCATAACTAATCTATAATATTGGAATGAAATCACTTTTGAGAACCAAACATTTCTTGTTAGTTCACGACTAAACATGCCATTAACACTTGAATAACCTCCATTAGCCAAAAACTTTATGTCTTAATTGCTCTTTCTGACTTCTAAAGAAGAATACAAATTTGTTTGAAAAAGATTTAAAAGTACTTCTGTTGTG

Coding sequence (CDS)

ATGAAATTGATAGCGCACTGTACTTCATACGAGGGAGCAATCATCAATCATAAACGCAGCCGTAGGAAGGTCACTGGGAAAGAGAAAAAAGAACTCTTAAAACCCTTCCCTCTCTCTTTCTCCTTCGTCAAACCCTATTCCTCTCGAAAATATTTCTCAAGGGTTTTGAATCCCAGTCGAGACCCAGGGTTTTCCACAGACCAACAGTTTTTCTATCCATCATCAATGGCGGACGACGATTACAATGACCTTGACATGGGATACGAAGATGAGCCACCAGAACCTGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATACTAACAATGATGATGTTCCTGGTGAACCCGTTGAAGCGGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACTAAGTATGAACGTGCTAGAATTTTGGGTACACGCGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTTGAATTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCTTTCACCATCCGTCGTTACTTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAACTGATTGTGGAAGACTCTTGGAAGAGGCAAGTTGGTGGTGCTTGA

Protein sequence

MKLIAHCTSYEGAIINHKRSRRKVTGKEKKELLKPFPLSFSFVKPYSSRKYFSRVLNPSRDPGFSTDQQFFYPSSMADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

Homology

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BLAST of Pay0007554 vs. ExPASy Swiss-Prot
Match: Q9FJ98 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=3702 GN=NRPB6A PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.1e-60
Identity = 120/143 (83.92%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 76  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-TNNDDVPGEPVEAEEKEDEEPVERVRK 135
           MAD+DYND+ D+GYEDEP EPEIEEG EE+++   NDDV GEP+EAE+K + EPV+R RK
Sbjct: 1   MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRK 60

Query: 136 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 195
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 196 GSYEDWGVDELIVEDSWKRQVGG 217
           GS+E+WGVDELIVEDSWKRQVGG
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Pay0007554 vs. ExPASy Swiss-Prot
Match: Q9SJ96 (DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702 GN=NRPB6B PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.5e-57
Identity = 118/143 (82.52%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 76  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-TNNDDVPGEPVEAEEKEDEEPVERVRK 135
           MADDDYN++ D+GYEDEP EPEIEEG EE+ D   NDDV  +P+E E+K + EPV+R RK
Sbjct: 1   MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRK 60

Query: 136 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 195
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 196 GSYEDWGVDELIVEDSWKRQVGG 217
            SYE+WGVDELIVEDSWKRQVGG
Sbjct: 121 MSYEEWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Pay0007554 vs. ExPASy Swiss-Prot
Match: Q32PE0 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos taurus OX=9913 GN=POLR2F PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-28
Identity = 80/131 (61.07%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 79  DDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVP-GEPVEAEEKEDEEPVERVRKTSKF 138
           DD++D++   EDE  +    E AEEE   N + +P GE  +A +K         R T+ +
Sbjct: 11  DDFDDVE---EDEGLDD--LENAEEEGQVNVEILPSGERPQANQK---------RITTPY 70

Query: 139 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 198
           MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYE
Sbjct: 71  MTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYE 127

Query: 199 DWGVDELIVED 209
           DWGVDELI+ D
Sbjct: 131 DWGVDELIITD 127

[Close]

BLAST of Pay0007554 vs. ExPASy Swiss-Prot
Match: P61219 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10090 GN=Polr2f PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-28
Identity = 80/131 (61.07%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 79  DDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVP-GEPVEAEEKEDEEPVERVRKTSKF 138
           DD++D++   EDE  +    E AEEE   N + +P GE  +A +K         R T+ +
Sbjct: 11  DDFDDVE---EDEGLDD--LENAEEEGQENVEILPSGERPQANQK---------RITTPY 70

Query: 139 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 198
           MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYE
Sbjct: 71  MTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYE 127

Query: 199 DWGVDELIVED 209
           DWGVDELI+ D
Sbjct: 131 DWGVDELIISD 127

[Close]

BLAST of Pay0007554 vs. ExPASy Swiss-Prot
Match: O88828 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus OX=10116 GN=Polr2f PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-28
Identity = 80/131 (61.07%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 79  DDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVP-GEPVEAEEKEDEEPVERVRKTSKF 138
           DD++D++   EDE  +    E AEEE   N + +P GE  +A +K         R T+ +
Sbjct: 11  DDFDDVE---EDEGLDD--LENAEEEGQENVEILPSGERPQANQK---------RITTPY 70

Query: 139 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 198
           MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYE
Sbjct: 71  MTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYE 127

Query: 199 DWGVDELIVED 209
           DWGVDELI+ D
Sbjct: 131 DWGVDELIISD 127

[Close]

BLAST of Pay0007554 vs. ExPASy TrEMBL
Match: A0A5A7TBT6 (PX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003780 PE=3 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.3e-114
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 5   AHCTSYEGAIINHKRSRRKVTGKEKKELLKPFPLSFSFVKPYSSRKYFSRVLNPSRDPGF 64
           AHCTSYEGAIINHKRSRRKVTGKEKKELLKPFPLSFSFVKPYSSRKYFSRVLNPSRDPGF
Sbjct: 706 AHCTSYEGAIINHKRSRRKVTGKEKKELLKPFPLSFSFVKPYSSRKYFSRVLNPSRDPGF 765

Query: 65  STDQQFFYPSSMADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKED 124
           STDQQFFYPSSMADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKED
Sbjct: 766 STDQQFFYPSSMADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKED 825

Query: 125 EEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 184
           EEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP
Sbjct: 826 EEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 885

Query: 185 FTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA 218
           FTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Sbjct: 886 FTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA 918

[Close]

BLAST of Pay0007554 vs. ExPASy TrEMBL
Match: A0A1S3CRD6 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucumis melo OX=3656 GN=LOC103503834 PE=3 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.0e-114
Identity = 213/217 (98.16%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MKLIAHCTSYEGAIINHKRSRRKVTGKEKKELLKPFPLSFSFVKPYSSRKYFSRVLNPSR 60
           MKL AHC SYEGAIINHKRSRRKVTGK+KKELLKPFPLSFSFVKPYSSRKYF RVLNPSR
Sbjct: 1   MKLTAHCISYEGAIINHKRSRRKVTGKKKKELLKPFPLSFSFVKPYSSRKYFLRVLNPSR 60

Query: 61  DPGFSTDQQFFYPSSMADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAE 120
           DPGFSTDQQFFYPSSMADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAE
Sbjct: 61  DPGFSTDQQFFYPSSMADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAE 120

Query: 121 EKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE 180
           EKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE
Sbjct: 121 EKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE 180

Query: 181 RKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA 218
           RKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Sbjct: 181 RKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA 217

[Close]

BLAST of Pay0007554 vs. ExPASy TrEMBL
Match: A0A5D3E797 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007550 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.8e-71
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 76  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKEDEEPVERVRKTS 135
           MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKEDEEPVERVRKTS
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKEDEEPVERVRKTS 60

Query: 136 KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 195
           KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS
Sbjct: 61  KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 120

Query: 196 YEDWGVDELIVEDSWKRQVGGA 218
           YEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 YEDWGVDELIVEDSWKRQVGGA 142

[Close]

BLAST of Pay0007554 vs. ExPASy TrEMBL
Match: A0A0A0LGM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G877600 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 5.9e-70
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 76  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKEDEEPVERVRKTS 135
           MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTN DDVPGEPVEAE KEDEEPVERVRKTS
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTS 60

Query: 136 KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 195
           KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS
Sbjct: 61  KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 120

Query: 196 YEDWGVDELIVEDSWKRQVGGA 218
           YEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 YEDWGVDELIVEDSWKRQVGGA 142

[Close]

BLAST of Pay0007554 vs. ExPASy TrEMBL
Match: A0A6J1J2R7 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX=3661 GN=LOC111482872 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 6.5e-69
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 76  MADDDYNDLDMGYEDEPPEPEIEEGAEEELD-TNNDDVPGEPVEAEEKEDEEPVERVRKT 135
           MADDDYNDLDMGY+DEPPEPE+EEGAEEELD  NNDDVPGEPVEAEEKEDEEPVERVRKT
Sbjct: 1   MADDDYNDLDMGYDDEPPEPELEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60

Query: 136 SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 195
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 196 SYEDWGVDELIVEDSWKRQVGGA 218
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Pay0007554 vs. NCBI nr
Match: KAA0038819.1 (PX domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 422.2 bits (1084), Expect = 2.8e-114
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 5   AHCTSYEGAIINHKRSRRKVTGKEKKELLKPFPLSFSFVKPYSSRKYFSRVLNPSRDPGF 64
           AHCTSYEGAIINHKRSRRKVTGKEKKELLKPFPLSFSFVKPYSSRKYFSRVLNPSRDPGF
Sbjct: 706 AHCTSYEGAIINHKRSRRKVTGKEKKELLKPFPLSFSFVKPYSSRKYFSRVLNPSRDPGF 765

Query: 65  STDQQFFYPSSMADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKED 124
           STDQQFFYPSSMADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKED
Sbjct: 766 STDQQFFYPSSMADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKED 825

Query: 125 EEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 184
           EEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP
Sbjct: 826 EEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 885

Query: 185 FTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA 218
           FTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Sbjct: 886 FTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA 918

[Close]

BLAST of Pay0007554 vs. NCBI nr
Match: XP_008466421.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucumis melo])

HSP 1 Score: 421.0 bits (1081), Expect = 6.2e-114
Identity = 213/217 (98.16%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MKLIAHCTSYEGAIINHKRSRRKVTGKEKKELLKPFPLSFSFVKPYSSRKYFSRVLNPSR 60
           MKL AHC SYEGAIINHKRSRRKVTGK+KKELLKPFPLSFSFVKPYSSRKYF RVLNPSR
Sbjct: 1   MKLTAHCISYEGAIINHKRSRRKVTGKKKKELLKPFPLSFSFVKPYSSRKYFLRVLNPSR 60

Query: 61  DPGFSTDQQFFYPSSMADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAE 120
           DPGFSTDQQFFYPSSMADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAE
Sbjct: 61  DPGFSTDQQFFYPSSMADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAE 120

Query: 121 EKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE 180
           EKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE
Sbjct: 121 EKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE 180

Query: 181 RKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA 218
           RKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Sbjct: 181 RKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA 217

[Close]

BLAST of Pay0007554 vs. NCBI nr
Match: TYK31441.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucumis melo var. makuwa])

HSP 1 Score: 278.9 bits (712), Expect = 3.8e-71
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 76  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKEDEEPVERVRKTS 135
           MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKEDEEPVERVRKTS
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKEDEEPVERVRKTS 60

Query: 136 KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 195
           KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS
Sbjct: 61  KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 120

Query: 196 YEDWGVDELIVEDSWKRQVGGA 218
           YEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 YEDWGVDELIVEDSWKRQVGGA 142

[Close]

BLAST of Pay0007554 vs. NCBI nr
Match: XP_004136357.1 (DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis sativus] >KGN60089.1 hypothetical protein Csa_001189 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 1.2e-69
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 76  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKEDEEPVERVRKTS 135
           MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTN DDVPGEPVEAE KEDEEPVERVRKTS
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTS 60

Query: 136 KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 195
           KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS
Sbjct: 61  KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 120

Query: 196 YEDWGVDELIVEDSWKRQVGGA 218
           YEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 YEDWGVDELIVEDSWKRQVGGA 142

[Close]

BLAST of Pay0007554 vs. NCBI nr
Match: XP_038878213.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Benincasa hispida])

HSP 1 Score: 272.3 bits (695), Expect = 3.6e-69
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 76  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNNDDVPGEPVEAEEKEDEEPVERVRKTS 135
           MAD+DYNDLDMGYEDEPPEPEIEEGAEEELD NNDDVPGEP EAEEKEDEEPVER RKTS
Sbjct: 1   MADEDYNDLDMGYEDEPPEPEIEEGAEEELDNNNDDVPGEPTEAEEKEDEEPVERARKTS 60

Query: 136 KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 195
           KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS
Sbjct: 61  KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 120

Query: 196 YEDWGVDELIVEDSWKRQVGGA 218
           YEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 YEDWGVDELIVEDSWKRQVGGA 142

[Close]

BLAST of Pay0007554 vs. TAIR 10
Match: AT5G51940.1 (RNA polymerase Rpb6 )

HSP 1 Score: 231.5 bits (589), Expect = 6.5e-61
Identity = 120/143 (83.92%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 76  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-TNNDDVPGEPVEAEEKEDEEPVERVRK 135
           MAD+DYND+ D+GYEDEP EPEIEEG EE+++   NDDV GEP+EAE+K + EPV+R RK
Sbjct: 1   MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRK 60

Query: 136 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 195
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 196 GSYEDWGVDELIVEDSWKRQVGG 217
           GS+E+WGVDELIVEDSWKRQVGG
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Pay0007554 vs. TAIR 10
Match: AT2G04630.1 (RNA polymerase Rpb6 )

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-58
Identity = 118/143 (82.52%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 76  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-TNNDDVPGEPVEAEEKEDEEPVERVRK 135
           MADDDYN++ D+GYEDEP EPEIEEG EE+ D   NDDV  +P+E E+K + EPV+R RK
Sbjct: 1   MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRK 60

Query: 136 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 195
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 196 GSYEDWGVDELIVEDSWKRQVGG 217
            SYE+WGVDELIVEDSWKRQVGG
Sbjct: 121 MSYEEWGVDELIVEDSWKRQVGG 143

The following BLAST results are available for this feature:

BLAST of Pay0007554 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJ98	9.1e-60	83.92	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=...	[more]
Q9SJ96	2.5e-57	82.52	DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702...	[more]
Q32PE0	1.4e-28	61.07	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos taurus OX=9913...	[more]
P61219	1.4e-28	61.07	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10...	[more]
O88828	1.4e-28	61.07	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus ...	[more]

BLAST of Pay0007554 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBT6	1.3e-114	100.00	PX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3CRD6	3.0e-114	98.16	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucumis melo OX=365...	[more]
A0A5D3E797	1.8e-71	100.00	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucumis melo var. m...	[more]
A0A0A0LGM1	5.9e-70	98.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G877600 PE=3 SV=1	[more]
A0A6J1J2R7	6.5e-69	97.20	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX...	[more]

BLAST of Pay0007554 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038819.1	2.8e-114	100.00	PX domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_008466421.1	6.2e-114	98.16	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucumis me...	[more]
TYK31441.1	3.8e-71	100.00	DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucumis melo var. mak...	[more]
XP_004136357.1	1.2e-69	98.59	DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis sativus] >KGN60089...	[more]
XP_038878213.1	3.6e-69	97.18	DNA-directed RNA polymerases II, IV and V subunit 6A-like [Benincasa hispida]	[more]

BLAST of Pay0007554 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51940.1	6.5e-61	83.92	RNA polymerase Rpb6	[more]
AT2G04630.1	1.8e-58	82.52	RNA polymerase Rpb6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006110	RNA polymerase, subunit omega/K/RPB6	SMART	SM01409	RNA_pol_Rpb6_2	coord: 132..185 e-value: 4.7E-6 score: 36.1
IPR006110	RNA polymerase, subunit omega/K/RPB6	PFAM	PF01192	RNA_pol_Rpb6	coord: 134..185 e-value: 1.4E-15 score: 56.9
IPR028363	DNA-directed RNA polymerase, subunit RPB6	PIRSF	PIRSF500154	RPB6	coord: 76..208 e-value: 4.3E-54 score: 180.4
IPR012293	RNA polymerase subunit, RPB6/omega	GENE3D	3.90.940.10		coord: 77..208 e-value: 9.2E-50 score: 169.9
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	PIRSF	PIRSF000778	RpoK/RPB6	coord: 74..208 e-value: 2.1E-47 score: 158.6
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	HAMAP	MF_00192	RNApol_arch_K	coord: 136..191 score: 18.504309
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..124
None	No IPR available	PANTHER	PTHR10773	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2	coord: 76..216
None	No IPR available	PANTHER	PTHR10773:SF16	DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6B	coord: 76..216
IPR020708	DNA-directed RNA polymerase, 14-18kDa subunit, conserved site	PROSITE	PS01111	RNA_POL_K_14KD	coord: 139..153
IPR036161	RPB6/omega subunit-like superfamily	SUPERFAMILY	63562	RPB6/omega subunit-like	coord: 76..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0007554.1	Pay0007554.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005768	endosome
cellular_component	GO:0016020	membrane
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0035091	phosphatidylinositol binding