Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAAGTTAGAGAAAAGACCCTTAGAGAGCTTGCCGAGCCCGATGAAAACCAAAGACCTCTTTGTATAGTCATACCCCCAACCACTCAACCTTTTGAATTAAAACCGGGACTTATTCATCTTTTGTTCATCTTTAAAGGAAGTTCCGGAGAGGACCCACACAAACATCTTAAGGATTTTCATATGGTTTGTGATTCCATGAGGCCTCACGGTATTTCGGAAAAACAACTAAATTTACAAGCCTTTCCTTTTTCCCTTATGGATGTAGGAAAGAGATGGCTCTACTACTTAGAACCGGGTTCCATAACCACTTGAGGTAGTCTAAAAAAGAAATTCTTAGAGAAATTTTTCCCTGCCTCTAGAGCAAACAATATTAGGAAAAAAATTTATGGGATAAGACAAGTCTTTGGAGAATCCCTCTCGGAATACTGGGAAAGATTCAAAGAGCTTTGTGCTAGTTTTCCTCACCATCATATTTCTGACCCTTCTTTAATTCAATATTTTTACTCCGGTCTTTTGTCTTTCGACAGGAATATGGTAGATGCGGCGGCGGGAGGAGCTCTAGCCGACAAGACCCCCACCGAAGCACTAGAGCTCATTTTAAGAATGACGGAAAATTCTCAAAACTTTGGGAATAGAGCATTGGAGCTTGACAATTTTCTAACAAAAGAGGTAAGTGAATTAAAATCACAAATGTTAAATATGACTACTCTTCTTACTTCTTTTGTACAAGGTACTCCTCTTAAAGTAACCAAGTGTGGAGTTTGTCGCTTGGTTGGTCATCCAAATGACAAATGTCCCGAGGTGATCGAGGATGTAAACATTGTTCGAAAATATGACCCCTACGGTAATACATACAATTCGGGGTGGAGAGACAACCCAAACTTAAGATGGGGGAATGACAACCAAAAGCATACACAAGCACCACCCACCTCTTCAAACCAAGGTACGAATCTTGAAGATATTATCAAAGCTTTGGCAACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTTACTACCGCCATAAGCAAGATGGATGGGAAAGGCAAACTTCCGGCTCAACCGGACTATGCTAATGTAAGTGCCATTTCACTAAGGAGTGGTAAGATTCTTGACACCCCCACCACCAAAGAGAAAAAGGTAACTTCCAAACTCTTACCTCTTAATAGTAAGAATGAGTCCAAGGAAGAAAAGGTTGAAACAAACCTCTCACCATCTAATTCTAAAAATGATAAATCTCCTCGTAATGATTTTACTCCTTACATACCTAAACCTCATTTCCCTCTAGGTTGACTCCAAAAAAAAGGAAACACCCAAGGAGGAAGAACTCTTGGAGATGTTTAGAAAGGTGCAAATCAACTTGCCCCTTCTCGATGCAATCCAACAAGTCTCGAGGTATGCAAAGTTTCTAAAGGAGTTGTGTACCAACAAGAGGAAAACAAAAGAAAGAGTAATGTTAAGTCAAAATGTTTCGACTCTTCTAAAGAGTAATATTCCAGAAAAATGCAATGACCCCAATATGTTTTCTTTACCTTGTGTAATAAGATAGACTAATTTCTCATGCAATTCTTGACTTAGGAGCATCCATAAATGTCATGCCATACGTCTTTAAAGATCTAGAACTCAATAATTTGAAAAAAACTAGTATATGCAAACAACTAGCGGATAGATCTTTTATTTCACCATTAGGAATAGTCAAAAGATGTCCTTGTAAAAATTGACAAACTAATTTTTCCGGCGGATTTTTACATATTAGAAATGAATGAAGCATGCCTAAAACCATCTCACTCTATTTTATTAGGAAGACCTTTTCTTAAAACTGCAAAAGCCATTATAAATGTTGATAAAGGTTCCTTGAGTGTAGAGTTTGATGGAGACATTGTCACATTCAGTATTTTTGAATCCATGAGATATCCAGATGAATGCTTGTCTTTATGTTTATTAGAATTGCATGATGAAGTTGATGAATTGTCTACACATGATAAATTTTTTGAACAAGAAATGGTTGAAAATAGAGAATTGTTAGAACCCCATGTTAACTATGCTTTAGAAAAAAATAATTATGATAATCTTTTCTTTTCTCCACAGAAACTAGGGATTTAGCTCAAAACTCTCCCACCACACTTGAAATACATATTCTTAGGAAAAAAGAATACGTTTCTCGTAATCATCTTCTCAAGGGAACTAAACCAAAAACAAGAAGAAAGACTTATCGAAGTCTTGAAAAAGAAAAAGCAAGCCATTGGTTGGACTCTTGACGACATTGAAAAAACAATGAGATAATCAATTAAGTCTTCAGTTAATACTAAAGCTAATAACAGTTGTAATAGCTAGAGGGACAGCAGAAGAGAATAACACATGAAACTTTGTTAACCTAGTTCGGCTAATATTGCCTACGTTTGGGGAGCTGCATACAACCCTGATGAGTAATCTTTATTAATATTCACTTGAGTTAATATATATCGATACAACATATGGTACTCTGTTCAATAATATAACTTAATAACATGCGTCTTGATATCAGACTCCAGACTCCCCCTAAATTACTTATCTTCATGATGTCTAGCTTCAGGCTCTCCCTGAACACATGAGTGAATATCTTTGACAACGTCTTTAGATCCCTCTAAAGATCATCGTGATCATACCAATCACTTGTTTCGTCTGTTACTCATCATTATTGTTACTACAATCAACATGACGACCTCATAG
mRNA sequence
ATGGGTGAAGTTAGAGAAAAGACCCTTAGAGAGCTTGCCGAGCCCGATGAAAACCAAAGACCTCTTTGTATAGTCATACCCCCAACCACTCAACCTTTTGAATTAAAACCGGGACTTATTCATCTTTTGCCTCACGGTATTTCGGAAAAACAACTAAATTTACAAGCCTTTCCTTTTTCCCTTATGGATGTAGGAAAGAGATGGCTCTACTACTTAGAACCGGAGAAATTTTTCCCTGCCTCTAGAGCAAACAATATTAGGAAAAAAATTTATGGGATAAGACAAGTCTTTGGAGAATCCCTCTCGGAATACTGGGAAAGATTCAAAGAGCTTTGTGCTAGTTTTCCTCACCATCATATTTCTGACCCTTCTTTAATTCAATATTTTTACTCCGCTCTAGCCGACAAGACCCCCACCGAAGCACTAGAGCTCATTTTAAGAATGACGGAAAATTCTCAAAACTTTGGGAATAGAGCATTGGAGCTTGACAATTTTCTAACAAAAGAGGTAAGTGAATTAAAATCACAAATGTTAAATATGACTACTCTTCTTACTTCTTTTGTACAAGGTACTCCTCTTAAAGTAACCAAGTGTGGAGTTTGTCGCTTGGTTGGTCATCCAAATGACAAATGTCCCGAGGTGATCGAGGATGTAAACATTCTCAAAACTCTCCCACCACACTTGAAATACATATTCTTAGGAAAAAAGAATACGTTTCTCGTAATCATCTTCTCAAGGGAACTAAACCAAAAACAAGAAGAAAGACTTATCGAAGTCTTGAAAAAGAAAAAGCAAGCCATTGATCCCTCTAAAGATCATCGTGATCATACCAATCACTTGTTTCGTCTGTTACTCATCATTATTGTTACTACAATCAACATGACGACCTCATAG
Coding sequence (CDS)
ATGGGTGAAGTTAGAGAAAAGACCCTTAGAGAGCTTGCCGAGCCCGATGAAAACCAAAGACCTCTTTGTATAGTCATACCCCCAACCACTCAACCTTTTGAATTAAAACCGGGACTTATTCATCTTTTGCCTCACGGTATTTCGGAAAAACAACTAAATTTACAAGCCTTTCCTTTTTCCCTTATGGATGTAGGAAAGAGATGGCTCTACTACTTAGAACCGGAGAAATTTTTCCCTGCCTCTAGAGCAAACAATATTAGGAAAAAAATTTATGGGATAAGACAAGTCTTTGGAGAATCCCTCTCGGAATACTGGGAAAGATTCAAAGAGCTTTGTGCTAGTTTTCCTCACCATCATATTTCTGACCCTTCTTTAATTCAATATTTTTACTCCGCTCTAGCCGACAAGACCCCCACCGAAGCACTAGAGCTCATTTTAAGAATGACGGAAAATTCTCAAAACTTTGGGAATAGAGCATTGGAGCTTGACAATTTTCTAACAAAAGAGGTAAGTGAATTAAAATCACAAATGTTAAATATGACTACTCTTCTTACTTCTTTTGTACAAGGTACTCCTCTTAAAGTAACCAAGTGTGGAGTTTGTCGCTTGGTTGGTCATCCAAATGACAAATGTCCCGAGGTGATCGAGGATGTAAACATTCTCAAAACTCTCCCACCACACTTGAAATACATATTCTTAGGAAAAAAGAATACGTTTCTCGTAATCATCTTCTCAAGGGAACTAAACCAAAAACAAGAAGAAAGACTTATCGAAGTCTTGAAAAAGAAAAAGCAAGCCATTGATCCCTCTAAAGATCATCGTGATCATACCAATCACTTGTTTCGTCTGTTACTCATCATTATTGTTACTACAATCAACATGACGACCTCATAG
Protein sequence
MGEVREKTLRELAEPDENQRPLCIVIPPTTQPFELKPGLIHLLPHGISEKQLNLQAFPFSLMDVGKRWLYYLEPEKFFPASRANNIRKKIYGIRQVFGESLSEYWERFKELCASFPHHHISDPSLIQYFYSALADKTPTEALELILRMTENSQNFGNRALELDNFLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNILKTLPPHLKYIFLGKKNTFLVIIFSRELNQKQEERLIEVLKKKKQAIDPSKDHRDHTNHLFRLLLIIIVTTINMTTS
Homology
BLAST of Pay0007494 vs. ExPASy TrEMBL
Match:
A0A5A7USL5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004630 PE=4 SV=1)
HSP 1 Score: 366.3 bits (939), Expect = 1.2e-97
Identity = 207/337 (61.42%), Postives = 229/337 (67.95%), Query Frame = 0
Query: 1 MGEVREKTLRELAEPDENQRPLCIVIPPTTQPFELKPGLIHLL----------------- 60
MGEVREK LRELAEP+E+ RPLCIVIPPTTQPFELKPGLIHLL
Sbjct: 1 MGEVREKILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKD 60
Query: 61 ---------PHGISEKQLNLQAFPFSLMDVGKRWLYYLEP--------------EKFFPA 120
P+ ISE+QLNL+AFPF L DV K WLYYLEP EKFFPA
Sbjct: 61 FHMVCDSMRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPA 120
Query: 121 SRANNIRKKIYGIRQVFGESLSEYWERFKELCASFPHHHISDPSLIQYFYS--------- 180
SRANNIRK+IYGIRQ FGESLS+YWERFKELCAS PH+HI DPSLIQYFYS
Sbjct: 121 SRANNIRKEIYGIRQAFGESLSKYWERFKELCASLPHYHIFDPSLIQYFYSGLLSFDRNT 180
Query: 181 -------ALADKTPTEALELILRMTENSQNFGNRALELDNFLTKEVSELKSQMLNMTTLL 240
ALADKTPTEA +LI RM ENSQ+FGNRA ELDN LTKEVSELKSQMLNMTTLL
Sbjct: 181 VDAATGGALADKTPTEARKLISRMMENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
Query: 241 TSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNILKTLPPH---LKYIFLGKKNTFLV 279
TSFVQGTPLKVTKCGVC LVGHPNDKCPEVIEDVNI++ PH L+ I K
Sbjct: 241 TSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPHGTNLEDII--KALATNT 300
BLAST of Pay0007494 vs. ExPASy TrEMBL
Match:
A0A1S3CD34 (uncharacterized protein LOC103499500 OS=Cucumis melo OX=3656 GN=LOC103499500 PE=4 SV=1)
HSP 1 Score: 349.4 bits (895), Expect = 1.5e-92
Identity = 192/284 (67.61%), Postives = 203/284 (71.48%), Query Frame = 0
Query: 1 MGEVREKTLRELAEPDENQRPLCIVIPPTTQPFELKPGLIHLL----------------- 60
MGEVREKTLREL EPDE+QRPLCIV+PPTTQPFELKPGLIHLL
Sbjct: 1 MGEVREKTLRELVEPDEDQRPLCIVMPPTTQPFELKPGLIHLLAIFIKGSYGEDPHKHLK 60
Query: 61 ----------PHGISEKQLNLQAFPFSLMDVGKRWLYYLEP--------------EKFFP 120
PHGI E+QLNL+AFPFSLMDV KRWLYYLE EKFFP
Sbjct: 61 DFHMVCDSMRPHGILEEQLNLRAFPFSLMDVAKRWLYYLEASSITTWGSQKKKFLEKFFP 120
Query: 121 ASRANNIRKKIYGIRQVFGESLSEYWERFKELCASFPHHHISDPSLIQYFYS-------- 180
ASRA+NIR IRQ FGESLSEYWERFKELCASFPHHHI DPSLIQYFYS
Sbjct: 121 ASRASNIR-----IRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLSFDRI 180
Query: 181 --------ALADKTPTEALELILRMTENSQNFGNRALELDNFLTKEVSELKSQMLNMTTL 228
AL +KTPTEA ELI RM ENSQ+FGNRA ELD+ LTKEVSELKSQMLNMTTL
Sbjct: 181 TVDAAAGGALVNKTPTEARELISRMAENSQSFGNRASELDDSLTKEVSELKSQMLNMTTL 240
BLAST of Pay0007494 vs. ExPASy TrEMBL
Match:
A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)
HSP 1 Score: 346.3 bits (887), Expect = 1.3e-91
Identity = 186/283 (65.72%), Postives = 202/283 (71.38%), Query Frame = 0
Query: 1 MGEVREKTLRELAEPDENQRPLCIVIPPTTQPFELKPGLIHLL----------------- 60
MGEVREKT+R+L E DE+QRPLCIVI TTQPFELKP LIHLL
Sbjct: 61 MGEVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHLKD 120
Query: 61 ---------PHGISEKQLNLQAFPFSLMDVGKRWLYYLEP--------------EKFFPA 120
PHGISE+QLNL+AFPFSL DV KRWLYYLEP EKFFPA
Sbjct: 121 FHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFFPA 180
Query: 121 SRANNIRKKIYGIRQVFGESLSEYWERFKELCASFPHHHISDPSLIQYFY---------- 180
SR NNIRK+IYGIRQ FGESL +YWE+FKELCA+FPHHHI PSLIQYFY
Sbjct: 181 SRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDRNT 240
Query: 181 ------SALADKTPTEALELILRMTENSQNFGNRALELDNFLTKEVSELKSQMLNMTTLL 228
ALA+K PTEA ELI RM +NSQ FGNRA EL+N LTKEVSELKSQMLNMTTLL
Sbjct: 241 VDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTTLL 300
BLAST of Pay0007494 vs. ExPASy TrEMBL
Match:
A0A5A7ULC7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29G00020 PE=4 SV=1)
HSP 1 Score: 339.0 bits (868), Expect = 2.1e-89
Identity = 218/446 (48.88%), Postives = 229/446 (51.35%), Query Frame = 0
Query: 1 MGEVREKTLRELAEPDENQRPLCIVIPPTTQPFELKPGLIHLLPHGISEKQLNLQAFPFS 60
MG+VREKTL+EL +PDE+QRPLCIVIPPTTQPFELK GLIHLLP
Sbjct: 1 MGKVREKTLKELVDPDEDQRPLCIVIPPTTQPFELKQGLIHLLP---------------- 60
Query: 61 LMDVGKRWLYYLEP--------------EKFFPASRANNIRKKIYGIRQVFGESLSEYWE 120
+ KRWLYYLEP EKFFPAS+ANNIRK+IYGIRQ FGESLS YWE
Sbjct: 61 IFKGKKRWLYYLEPGSITTWGSLKKKFLEKFFPASKANNIRKEIYGIRQAFGESLSRYWE 120
Query: 121 RFKELCASFPHHHISDPSLIQYFYS----------------ALADKTPTEALELILRMTE 180
RFKELCASFP HIS+PSLIQYFYS ALADKTP EA ELI RM E
Sbjct: 121 RFKELCASFPFLHISNPSLIQYFYSGLLSSDKNTVDAAAGGALADKTPIEAQELISRMAE 180
Query: 181 NSQNFGNRALELDNFLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCRLVGHPNDK 240
NSQ+FGNRA EL N LTKEVSE+KSQMLNMTTLLTSFVQGTP+KVTKCGV VGHPNDK
Sbjct: 181 NSQSFGNRASELVNSLTKEVSEIKSQMLNMTTLLTSFVQGTPIKVTKCGVFGFVGHPNDK 240
Query: 241 CPEVIEDVNI-------------------------------------------------- 268
CPEVIEDVNI
Sbjct: 241 CPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQTHTQAPPTSSNQGTNLEVIIKA 300
BLAST of Pay0007494 vs. ExPASy TrEMBL
Match:
A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)
HSP 1 Score: 331.3 bits (848), Expect = 4.3e-87
Identity = 175/243 (72.02%), Postives = 188/243 (77.37%), Query Frame = 0
Query: 1 MGEVREKTLRELAEPDENQRPLCIVIPPTTQPFELKPGLIHLLPHGISEKQLNLQAFPFS 60
MGEVREKTLRELAEPDE+QRPLCIVIPPTTQPFELK GLIHLLP + P S
Sbjct: 1 MGEVREKTLRELAEPDEDQRPLCIVIPPTTQPFELKSGLIHLLP--------IFKGKPSS 60
Query: 61 LMDVGKRWLYYLEPEKFFPASRANNIRKKIYGIRQVFGESLSEYWERFKELCASFPHHHI 120
+ G +L EKFF ASRANNIRK+IYGIRQ F ESLSEYWERFKELCASFPHHHI
Sbjct: 61 ITTWGSLKKKFL--EKFFLASRANNIRKEIYGIRQAFEESLSEYWERFKELCASFPHHHI 120
Query: 121 SDPSLIQYFYS----------------ALADKTPTEALELILRMTENSQNFGNRALELDN 180
DPSL QYFYS ALADKTPTEA ELI RM EN Q+FGNRA +L+N
Sbjct: 121 FDPSLFQYFYSGLLSSDRNTVDAVAGRALADKTPTEAWELISRMAENFQSFGNRASKLEN 180
Query: 181 FLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNILKTL 228
+LTKEVSELKS+MLNMTTLLTSFVQGTP KVTKCGVC LVGHPNDKCPEVIED+NI++
Sbjct: 181 YLTKEVSELKSKMLNMTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRY 233
BLAST of Pay0007494 vs. NCBI nr
Match:
KAA0058150.1 (uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa])
HSP 1 Score: 366.3 bits (939), Expect = 2.5e-97
Identity = 207/337 (61.42%), Postives = 229/337 (67.95%), Query Frame = 0
Query: 1 MGEVREKTLRELAEPDENQRPLCIVIPPTTQPFELKPGLIHLL----------------- 60
MGEVREK LRELAEP+E+ RPLCIVIPPTTQPFELKPGLIHLL
Sbjct: 1 MGEVREKILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKD 60
Query: 61 ---------PHGISEKQLNLQAFPFSLMDVGKRWLYYLEP--------------EKFFPA 120
P+ ISE+QLNL+AFPF L DV K WLYYLEP EKFFPA
Sbjct: 61 FHMVCDSMRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPA 120
Query: 121 SRANNIRKKIYGIRQVFGESLSEYWERFKELCASFPHHHISDPSLIQYFYS--------- 180
SRANNIRK+IYGIRQ FGESLS+YWERFKELCAS PH+HI DPSLIQYFYS
Sbjct: 121 SRANNIRKEIYGIRQAFGESLSKYWERFKELCASLPHYHIFDPSLIQYFYSGLLSFDRNT 180
Query: 181 -------ALADKTPTEALELILRMTENSQNFGNRALELDNFLTKEVSELKSQMLNMTTLL 240
ALADKTPTEA +LI RM ENSQ+FGNRA ELDN LTKEVSELKSQMLNMTTLL
Sbjct: 181 VDAATGGALADKTPTEARKLISRMMENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
Query: 241 TSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNILKTLPPH---LKYIFLGKKNTFLV 279
TSFVQGTPLKVTKCGVC LVGHPNDKCPEVIEDVNI++ PH L+ I K
Sbjct: 241 TSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPHGTNLEDII--KALATNT 300
BLAST of Pay0007494 vs. NCBI nr
Match:
XP_008460738.1 (PREDICTED: uncharacterized protein LOC103499500 [Cucumis melo])
HSP 1 Score: 349.4 bits (895), Expect = 3.1e-92
Identity = 192/284 (67.61%), Postives = 203/284 (71.48%), Query Frame = 0
Query: 1 MGEVREKTLRELAEPDENQRPLCIVIPPTTQPFELKPGLIHLL----------------- 60
MGEVREKTLREL EPDE+QRPLCIV+PPTTQPFELKPGLIHLL
Sbjct: 1 MGEVREKTLRELVEPDEDQRPLCIVMPPTTQPFELKPGLIHLLAIFIKGSYGEDPHKHLK 60
Query: 61 ----------PHGISEKQLNLQAFPFSLMDVGKRWLYYLEP--------------EKFFP 120
PHGI E+QLNL+AFPFSLMDV KRWLYYLE EKFFP
Sbjct: 61 DFHMVCDSMRPHGILEEQLNLRAFPFSLMDVAKRWLYYLEASSITTWGSQKKKFLEKFFP 120
Query: 121 ASRANNIRKKIYGIRQVFGESLSEYWERFKELCASFPHHHISDPSLIQYFYS-------- 180
ASRA+NIR IRQ FGESLSEYWERFKELCASFPHHHI DPSLIQYFYS
Sbjct: 121 ASRASNIR-----IRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLSFDRI 180
Query: 181 --------ALADKTPTEALELILRMTENSQNFGNRALELDNFLTKEVSELKSQMLNMTTL 228
AL +KTPTEA ELI RM ENSQ+FGNRA ELD+ LTKEVSELKSQMLNMTTL
Sbjct: 181 TVDAAAGGALVNKTPTEARELISRMAENSQSFGNRASELDDSLTKEVSELKSQMLNMTTL 240
BLAST of Pay0007494 vs. NCBI nr
Match:
KAA0031967.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 346.3 bits (887), Expect = 2.7e-91
Identity = 186/283 (65.72%), Postives = 202/283 (71.38%), Query Frame = 0
Query: 1 MGEVREKTLRELAEPDENQRPLCIVIPPTTQPFELKPGLIHLL----------------- 60
MGEVREKT+R+L E DE+QRPLCIVI TTQPFELKP LIHLL
Sbjct: 61 MGEVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHLKD 120
Query: 61 ---------PHGISEKQLNLQAFPFSLMDVGKRWLYYLEP--------------EKFFPA 120
PHGISE+QLNL+AFPFSL DV KRWLYYLEP EKFFPA
Sbjct: 121 FHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFFPA 180
Query: 121 SRANNIRKKIYGIRQVFGESLSEYWERFKELCASFPHHHISDPSLIQYFY---------- 180
SR NNIRK+IYGIRQ FGESL +YWE+FKELCA+FPHHHI PSLIQYFY
Sbjct: 181 SRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDRNT 240
Query: 181 ------SALADKTPTEALELILRMTENSQNFGNRALELDNFLTKEVSELKSQMLNMTTLL 228
ALA+K PTEA ELI RM +NSQ FGNRA EL+N LTKEVSELKSQMLNMTTLL
Sbjct: 241 VDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTTLL 300
BLAST of Pay0007494 vs. NCBI nr
Match:
KAA0056713.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 339.0 bits (868), Expect = 4.2e-89
Identity = 218/446 (48.88%), Postives = 229/446 (51.35%), Query Frame = 0
Query: 1 MGEVREKTLRELAEPDENQRPLCIVIPPTTQPFELKPGLIHLLPHGISEKQLNLQAFPFS 60
MG+VREKTL+EL +PDE+QRPLCIVIPPTTQPFELK GLIHLLP
Sbjct: 1 MGKVREKTLKELVDPDEDQRPLCIVIPPTTQPFELKQGLIHLLP---------------- 60
Query: 61 LMDVGKRWLYYLEP--------------EKFFPASRANNIRKKIYGIRQVFGESLSEYWE 120
+ KRWLYYLEP EKFFPAS+ANNIRK+IYGIRQ FGESLS YWE
Sbjct: 61 IFKGKKRWLYYLEPGSITTWGSLKKKFLEKFFPASKANNIRKEIYGIRQAFGESLSRYWE 120
Query: 121 RFKELCASFPHHHISDPSLIQYFYS----------------ALADKTPTEALELILRMTE 180
RFKELCASFP HIS+PSLIQYFYS ALADKTP EA ELI RM E
Sbjct: 121 RFKELCASFPFLHISNPSLIQYFYSGLLSSDKNTVDAAAGGALADKTPIEAQELISRMAE 180
Query: 181 NSQNFGNRALELDNFLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCRLVGHPNDK 240
NSQ+FGNRA EL N LTKEVSE+KSQMLNMTTLLTSFVQGTP+KVTKCGV VGHPNDK
Sbjct: 181 NSQSFGNRASELVNSLTKEVSEIKSQMLNMTTLLTSFVQGTPIKVTKCGVFGFVGHPNDK 240
Query: 241 CPEVIEDVNI-------------------------------------------------- 268
CPEVIEDVNI
Sbjct: 241 CPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQTHTQAPPTSSNQGTNLEVIIKA 300
BLAST of Pay0007494 vs. NCBI nr
Match:
TYK10613.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 331.3 bits (848), Expect = 8.8e-87
Identity = 175/243 (72.02%), Postives = 188/243 (77.37%), Query Frame = 0
Query: 1 MGEVREKTLRELAEPDENQRPLCIVIPPTTQPFELKPGLIHLLPHGISEKQLNLQAFPFS 60
MGEVREKTLRELAEPDE+QRPLCIVIPPTTQPFELK GLIHLLP + P S
Sbjct: 1 MGEVREKTLRELAEPDEDQRPLCIVIPPTTQPFELKSGLIHLLP--------IFKGKPSS 60
Query: 61 LMDVGKRWLYYLEPEKFFPASRANNIRKKIYGIRQVFGESLSEYWERFKELCASFPHHHI 120
+ G +L EKFF ASRANNIRK+IYGIRQ F ESLSEYWERFKELCASFPHHHI
Sbjct: 61 ITTWGSLKKKFL--EKFFLASRANNIRKEIYGIRQAFEESLSEYWERFKELCASFPHHHI 120
Query: 121 SDPSLIQYFYS----------------ALADKTPTEALELILRMTENSQNFGNRALELDN 180
DPSL QYFYS ALADKTPTEA ELI RM EN Q+FGNRA +L+N
Sbjct: 121 FDPSLFQYFYSGLLSSDRNTVDAVAGRALADKTPTEAWELISRMAENFQSFGNRASKLEN 180
Query: 181 FLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNILKTL 228
+LTKEVSELKS+MLNMTTLLTSFVQGTP KVTKCGVC LVGHPNDKCPEVIED+NI++
Sbjct: 181 YLTKEVSELKSKMLNMTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRY 233
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7USL5 | 1.2e-97 | 61.42 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
| A0A1S3CD34 | 1.5e-92 | 67.61 | uncharacterized protein LOC103499500 OS=Cucumis melo OX=3656 GN=LOC103499500 PE=... | [more] |
| A0A5A7SRF5 | 1.3e-91 | 65.72 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5A7ULC7 | 2.1e-89 | 48.88 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5D3CFE7 | 4.3e-87 | 72.02 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0058150.1 | 2.5e-97 | 61.42 | uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa] | [more] |
| XP_008460738.1 | 3.1e-92 | 67.61 | PREDICTED: uncharacterized protein LOC103499500 [Cucumis melo] | [more] |
| KAA0031967.1 | 2.7e-91 | 65.72 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotranspos... | [more] |
| KAA0056713.1 | 4.2e-89 | 48.88 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| TYK10613.1 | 8.8e-87 | 72.02 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
