Pay0007478 (gene) Melon (Payzawat) v1

Overview


Name	Pay0007478
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like
Location	chr01: 971780 .. 976179 (+)
RNA-Seq Expression	Pay0007478
Synteny	Pay0007478

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAAATGTAAATTCTAAAACTCTTTCATCCTCCCGAAGAACAGACAAAATCACCTGAGCCCGTAAGGCGTAAACTACTCTTTCTTCTTCTTCAACAGCTAACTATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTTTCCATTCCTCAATCTCAACCGCCATTTCCAACTTCTCGAACCTCGCTTCTTTCCCATCCCTTCCAAATTTCTTATACGCTCCTCCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGTCCATTTTGATTTCTCTTCCCATCTATTCACCTTTTTTTCCTGTGTTTTTGTTCTTAGTTTGCTCGATTAACTTCCAGGGAGTTGATAATTTTGTGGACGAGCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACGATGAGGAAGAGGATAGAAGTTTGGATCTTTTGGTTCGTTTTGTTGAGAATGTTTTTAGGAAATCCTCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCAATCCATCCCTACTAAACTGGTAAAGTTTATTCAGCTATGAGCTTAATCGTTGATTTTTTTTTTCTTCCTGTTTTGTTGTTGGTTCATTGTGTATCAGTACTTGTTTTTCCAGGTGGCATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTAAATGCTTCGAAATTTAGCCATTTTTAATGCTTTTCCTTTGGTATTTCCATATGGAATTGTTTCCTCAGCAATATAGGTAGTTGTAAGCTTTTCATTGCAAAGGAGAAATTTGTGTTCGAAATTTAACGATAATATTGGAGATGGAATTATTATGACGCTTTGCTTGTTATTTTGCTTGTGCATGGCAAACGTATCAACCGAAAAAAAAAACAAGAAAAAACGTGAAAAGAAGACAAAAAGAAGAGATGTCTTAGGCTTCTCTTTGTTGGAAGAAGCTATTCAATGGCCTCCTGTTTAGTCATACTTTCTGAAAGTCAGCAAATTCAATTGGTTTAATGTTTAGAGCCTTAAGAGTTTTTTTTTCCCATCTTGAAGTTCCCTCCACAAGATATTTGTAATGGTTGCTTGTTGATAAGAGTCTCTTTGTAACTCCTTTAGTATTGCTGGTGCCATGGGCTAACTCCAACTCCAATATATGTTCTGATACGAATCCACCTCATAAACGATCTCCATATCTTATGAACAGTTGTGGTGTATTTAGTTGCTTAATTAGTTGTTAATTACCTACTACCTACTGAACTGGATTTTAGACTCTTTGACTTGTTGAAAAGGTGATAGGTCACCTTTGACTTGTTGTAGTACAAATAATAGTTGTTATTATTTATATTCCAGAATGTTAATAAAAAATACCCATATTTCTTGTTTCTGTGTTAATTCTCCAAGAACACACCAAGTTGTGAACCGATATTGTCATTAGAAAACTTTTTGAAACTGGCAAGTATCTGTCAATTAACGAAATATTCAGATTGATGGGTGCATTTACAGGGTTCTAGTATGAATCTTGATATGGTTAAAAGTGAACTCAGGGACCGTTAGGTTCACTAAATGAAGTTAATAAGCCTGAAGTTACTATGTTTGAGTTAGTAATATTATGTCTCGGCTGTGGAATTGTAAGATGGAGTTCTTTCAAAAATGTGAAAAGCAGAGAAAGAGGGAAAGGTAGAGTTACTTGCAGTGTTTTGAAAGGCGCACTTGGGGACACGTCTAGGAACTAGGCGCAACATTGGCCCCTAGGCGAGGCGCATTGAGGATTAGCGCACCTCTTTGAGCTTTTTTTTTTGACAAATCCCTTAAAACACAAATTTGGCTGCCATTTAATATAAAATATAATATATTTATTTATTTTTGACCTAATTTGAAATAAAGCATCATTATACAATTTATACCTATGGCTAATATTGATCTAAAGTACAAGCTGAAGCGGCAGATTTCTTATATATCTTGGTGTTGGATGACTAATATTTAACTCATATCTTTTTTTGTACAAATCTCATTTCTATCCATCTATATTGTGGTTGGGTAAATAAACATGTATATAGCATATGTATGTATATATATTTTATATTTCTTATATATAGTGCACCTCACAAAAAAAATCGTGCCTTTTCTTCCACCTTGCGCCTAGGCTTCAGAGGGCCATTGTAACTTAGTGCGTCTTGGGCATTTTAAAAACACTGGTTAGTCGATAAATGTGAACAATAGAGATAAAGAGAGAGATGGAGTTTCTTGATAATCATAAAAATTAGAAAAAGAGGGAAGGGTGAAACTACTCGATAAATGTGCATACTTCATTGAGTTGAGTTGTTTAACCAAACAAATCCTAAATCCTAAATGTCAGTTAGCCTTGTTTAGTTTTTATCAGTAGTGAAAGTACCAGTCTATTGATGTGAATCAACCGAGTTTGCTTCTGCTTGTAGACAGTTGACGCTAAAATCTCTGCTGGCAGGATGTGAGTAAGAAAATTCATGCCTATATGACTGGAATTTGAAGGAAATCCAACAATATGCATCAGAGCCACTTGCCAGTAGTGATCTTAGAGATACATTAGCTTTCTTTGGGGTTTTATTTACCAACGCACACAAATACTTGTGTTTCTAGAAAATGACAAAACTATTTGACTTAAAACCGCTAGTCTGTTGATGTAGGTTGATTATTGAGTTTACTAGTGGTTGTAGACAGTTTGTCTGTTGGTGTGAATTGACTATTGAGTTTCCTGGTGTTTATAGACAGTAGGTTCCTCGGGAGACTGTTCTGAAAGGGTCTGGTATGGGAAGAATAAAAAATTTCATACAAGCTGAAACTAATTAAGACTGTAATTTCTTGAGATAGATTTTTATTGAAAAACAAATTTGTCAATGCATTCTTGTTGAAAAGGTTCTCTTTGCCAGTTTTGACTATAATGGTGTTGTGTAAGTAGCTGGGGGTTTGACATAGAGTGGAATTTAAATGTTTTCTTTTTTCCTTTTCTATTCTTTTCTCCTTTCTTCGTTCATCGAGAGGGGTTGGTCAAATAAGAAATATTGAATGCTTGTTTTCTTTTGGATTTTCTTCCCTGTGGTTTTTTTGGTTAATCTCTCATAGGGTGTTATTTATTTTATTATTTATTATTTTTAAGTTGTTGACCTTTATTTTTCTACATGACATCACTCTCTTCTGTTCTACTTTCAATTTTCTCAACAACGCCATCCTTCCATTAAAAGGAAAAGAAATAATTCTCCTTTTATGAAAATCATACCTAATTTCCAAAGTTTTCTCCTTCAGTACTACTGTATTAGGACCATTTTCATTAACTCCCTTGGCTATATGAAATCTTAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTAATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGAACAATTCGATGATGATCAGCACCATGCGTGGACTGGTGCACAACCTGCATCCTGAATGCTTCAAGCACTTAACTACTTACAAGCCACAAGGTTAGTGAACTACCCCCCCCACCCCGCAAAAAAAAAAAAAAGGGTATAGCTTAAATAAAATATGGTTTGATCCTATTTTGGTTCTTCTGCATTCATGCTTATCTCATTTTGATCTTCAAATTCTTGTACTCTTAATTTTGTATATAATAGTGTTTTAGTTCTCGCCAACACTTTCCATAAATAATTCTATTTTGATTTTTTAATTCATCTGACAAGTAGATAACCGAATGAATAAGTGTTTGAAAAGCTCCCAATCATGTTATGCGGTTTGTTTCTAAATGAAGTTGGATTTTTGTTAAATGATTTATGAATAAAAGTGGCGAGGACTAAAATAACTATCTATACAAAATTTAGGAACTTAAGTAACTAAACGTTGTAAAGTTTATTGATCAAAATAAAAGCGTGAAGGCGGAAGTCTAAGTTTCAAAATAGAATCTAAACCAAATACAAACGCCACTGGAGCAGAAATGCTTCTACAAACTTGAAGTATAGTTTTGATTCTTTTGTTCTCGTAGCTCTCTCTATACTATTAAAGAAAGCAACACCTCTTTGCTTTTGTTACTTCTTTCAAGTCTTTAGGACATGATTGAAAATAGCAAAGGTAACCTCTAATGTAATATTATGAGAGAAATGTGGTATAGTATTTGGTTGTAATCTCAGTTTTATCTTCCACTATTTATAGCTTCCTCATTTCATTCTTCGTTTCCCACTCTTTGCACTTTTCTCATCTCCTTTATTATTCTCTCATCTTTGCACACCATCAATGTAGTGAAGAATCTCCTACCTTTCTTATTTATTGTTTCAAAATCGATAGTACATTAGTTT

mRNA sequence

TGTAAATGTAAATTCTAAAACTCTTTCATCCTCCCGAAGAACAGACAAAATCACCTGAGCCCGTAAGGCGTAAACTACTCTTTCTTCTTCTTCAACAGCTAACTATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTTTCCATTCCTCAATCTCAACCGCCATTTCCAACTTCTCGAACCTCGCTTCTTTCCCATCCCTTCCAAATTTCTTATACGCTCCTCCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATAATTTTGTGGACGAGCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACGATGAGGAAGAGGATAGAAGTTTGGATCTTTTGGTTCGTTTTGTTGAGAATGTTTTTAGGAAATCCTCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCAATCCATCCCTACTAAACTGGTGGCATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTAATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGAACAATTCGATGATGATCAGCACCATGCGTGGACTGGTGCACAACCTGCATCCTGAATGCTTCAAGCACTTAACTACTTACAAGCCACAAGGTTAGTGAACTACCCCCCCCACCCCGCAAAAAAAAAAAAAAGGGTATAGCTTAAATAAAATATGGTTTGATCCTATTTTGGTTCTTCTGCATTCATGCTTATCTCATTTTGATCTTCAAATTCTTGTACTCTTAATTTTGTATATAATAGTGTTTTAGTTCTCGCCAACACTTTCCATAAATAATTCTATTTTGATTTTTTAATTCATCTGACAAGTAGATAACCGAATGAATAAGTGTTTGAAAAGCTCCCAATCATGTTATGCGGTTTGTTTCTAAATGAAGTTGGATTTTTGTTAAATGATTTATGAATAAAAGTGGCGAGGACTAAAATAACTATCTATACAAAATTTAGGAACTTAAGTAACTAAACGTTGTAAAGTTTATTGATCAAAATAAAAGCGTGAAGGCGGAAGTCTAAGTTTCAAAATAGAATCTAAACCAAATACAAACGCCACTGGAGCAGAAATGCTTCTACAAACTTGAAGTATAGTTTTGATTCTTTTGTTCTCGTAGCTCTCTCTATACTATTAAAGAAAGCAACACCTCTTTGCTTTTGTTACTTCTTTCAAGTCTTTAGGACATGATTGAAAATAGCAAAGGTAACCTCTAATGTAATATTATGAGAGAAATGTGGTATAGTATTTGGTTGTAATCTCAGTTTTATCTTCCACTATTTATAGCTTCCTCATTTCATTCTTCGTTTCCCACTCTTTGCACTTTTCTCATCTCCTTTATTATTCTCTCATCTTTGCACACCATCAATGTAGTGAAGAATCTCCTACCTTTCTTATTTATTGTTTCAAAATCGATAGTACATTAGTTT

Coding sequence (CDS)

ATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTTTCCATTCCTCAATCTCAACCGCCATTTCCAACTTCTCGAACCTCGCTTCTTTCCCATCCCTTCCAAATTTCTTATACGCTCCTCCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATAATTTTGTGGACGAGCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACGATGAGGAAGAGGATAGAAGTTTGGATCTTTTGGTTCGTTTTGTTGAGAATGTTTTTAGGAAATCCTCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCAATCCATCCCTACTAAACTGGTGGCATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTAATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGAACAATTCGATGATGATCAGCACCATGCGTGGACTGGTGCACAACCTGCATCCTGA

Protein sequence

MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDERRNWNRSDFDLIGGEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTRSHRLEQFDDDQHHAWTGAQPAS

Homology

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BLAST of Pay0007478 vs. ExPASy Swiss-Prot
Match: F4I3V6 (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.1e-14
Identity = 58/151 (38.41%), Postives = 89/151 (58.94%), Query Frame = 0


Query: 33  PFQISYTLLRATRRTSNFSQGVDNFVDERRNWNRSDFDLIGGEE-----EEEEEEEDDDE 92
           PF  +   LR   R  N S    +    RR +   D    GG+      +++   +DDDE
Sbjct: 31  PFSSNSIFLRRRFRRLNRSL-ASSSSHSRRRYESDDRFFGGGDNYDVVPDDDGFSDDDDE 90

Query: 93  EEDR--SLDLLVRFVENVFRKSSRRARKAVRSVLPQSIPTKLVAFSVNGVLMLAFLWVLK 152
           E++R  S+DLL+RF+ ++F+K S+R +KA R +LP ++  +LV+F+V+G+L+L  L + +
Sbjct: 91  EDERESSVDLLIRFLRSMFKKVSKRTKKASRRILPAAMSPRLVSFAVDGILLLGSLSITR 150

Query: 153 AFLEVICTLGTAVFVSILIIRGVWIGILYLQ 177
           AFLEVIC LG  VF  IL+IR  W    + Q
Sbjct: 151 AFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

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BLAST of Pay0007478 vs. ExPASy TrEMBL
Match: A0A1S3C0Q8 (uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.1e-100
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNRSDFDLIGG-EEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGG EEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120

Query: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLEQFDDDQHHAWTGAQPAS 202
           SHRLEQFDDDQHHAWTGAQPAS
Sbjct: 181 SHRLEQFDDDQHHAWTGAQPAS 202

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BLAST of Pay0007478 vs. ExPASy TrEMBL
Match: A0A0A0K2W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.7e-92
Identity = 188/202 (93.07%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSLPAVLSPPSLFSIPQSQ PF TS TSLLSHP  ISYTLLRATRRTSNFSQGVDNFVD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60

Query: 61  RRNWNRSDFDLIGGEEEEEEEE-EDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEEEEEEE ED+++EEDRSLDLLVRFVEN+FRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120

Query: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           P SIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLEQFDDDQHHAWTGAQPAS 202
           SHRL Q DDDQHHAWTGAQPAS
Sbjct: 181 SHRLGQLDDDQHHAWTGAQPAS 202

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BLAST of Pay0007478 vs. ExPASy TrEMBL
Match: A0A6J1JL13 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486160 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.3e-83
Identity = 170/204 (83.33%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSLPA LSPPSL+SIP SQPP PTSRTS+LSH  QIS+TLLRA+RRTSNFSQGVD+ VD+
Sbjct: 1   MSLPAALSPPSLYSIPYSQPPLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNR---SDFDLIGGEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRS 120
           RRNWNR   SDFD+IGGE++E++E+E ++EEEDRSLDLLVRFVENVFRK S+RARKAVRS
Sbjct: 61  RRNWNRSISSDFDIIGGEDDEDDEDE-ENEEEDRSLDLLVRFVENVFRKVSKRARKAVRS 120

Query: 121 VLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 180
           VLPQSIPTKLV FSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYLQD
Sbjct: 121 VLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQD 180

Query: 181 TRSHRLEQFDDDQHHAWTGAQPAS 202
            RSHR ++ DDDQHHAWTGAQPAS
Sbjct: 181 IRSHRFDRLDDDQHHAWTGAQPAS 203

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BLAST of Pay0007478 vs. ExPASy TrEMBL
Match: A0A6J1GJK6 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111454943 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 5.6e-83
Identity = 175/204 (85.78%), Postives = 185/204 (90.69%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSL A  SPPSLF++PQ QPPFPTSRT LLSHPFQ+S+ LLRA+RR SNFSQGVD+ VD+
Sbjct: 1   MSLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDD 60

Query: 61  RRNWN---RSDFDLIGGEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRS 120
           RRNWN    SDFDLIGG EEEEEEEED+DEEEDRSLDLLV+FVENVFRK SRRARKAVRS
Sbjct: 61  RRNWNGSIGSDFDLIGG-EEEEEEEEDEDEEEDRSLDLLVQFVENVFRKVSRRARKAVRS 120

Query: 121 VLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 180
           VLPQSIPTKLV F VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD
Sbjct: 121 VLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 180

Query: 181 TRSHRLEQFDDDQHHAWTGAQPAS 202
            RSHRL+Q DDDQ HAWTGAQPAS
Sbjct: 181 IRSHRLDQLDDDQPHAWTGAQPAS 203

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BLAST of Pay0007478 vs. ExPASy TrEMBL
Match: A0A6J1D3L5 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Momordica charantia OX=3673 GN=LOC111017292 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 5.6e-83
Identity = 171/206 (83.01%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQ--SQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFV 60
           MS PA LSPPSLFSIPQ   QP F +SRTSLLSHPFQIS+TLLRA+RR SNFSQGVDN V
Sbjct: 1   MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLV 60

Query: 61  DERRNWNR---SDFDLIGGEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAV 120
           D+RRNWNR   SDFD++GGE++EE+EE+++DEEEDRSLDLLVRFVENVFRK S+RARKAV
Sbjct: 61  DDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDLLVRFVENVFRKVSKRARKAV 120

Query: 121 RSVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180
           RSVLPQSIPTKLV FSVNGVLMLAFLWVLKAFL+VICTLGTAVFVSILIIRGVW GILYL
Sbjct: 121 RSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYL 180

Query: 181 QDTRSHRLEQFDDDQHHAWTGAQPAS 202
           QD RSHR +Q D++QHHAWTGAQPAS
Sbjct: 181 QDIRSHRFDQLDNEQHHAWTGAQPAS 206

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BLAST of Pay0007478 vs. NCBI nr
Match: XP_008455053.1 (PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo])

HSP 1 Score: 373.6 bits (958), Expect = 1.0e-99
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNRSDFDLIGG-EEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGG EEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120

Query: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLEQFDDDQHHAWTGAQPAS 202
           SHRLEQFDDDQHHAWTGAQPAS
Sbjct: 181 SHRLEQFDDDQHHAWTGAQPAS 202

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BLAST of Pay0007478 vs. NCBI nr
Match: XP_004136931.2 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Cucumis sativus] >KGN43838.1 hypothetical protein Csa_017135 [Cucumis sativus])

HSP 1 Score: 346.7 bits (888), Expect = 1.4e-91
Identity = 188/202 (93.07%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSLPAVLSPPSLFSIPQSQ PF TS TSLLSHP  ISYTLLRATRRTSNFSQGVDNFVD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60

Query: 61  RRNWNRSDFDLIGGEEEEEEEE-EDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEEEEEEE ED+++EEDRSLDLLVRFVEN+FRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120

Query: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           P SIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLEQFDDDQHHAWTGAQPAS 202
           SHRL Q DDDQHHAWTGAQPAS
Sbjct: 181 SHRLGQLDDDQHHAWTGAQPAS 202

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BLAST of Pay0007478 vs. NCBI nr
Match: XP_038877542.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Benincasa hispida])

HSP 1 Score: 339.0 bits (868), Expect = 2.9e-89
Identity = 181/204 (88.73%), Postives = 192/204 (94.12%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSL A LSPPSLFSIPQSQPPFPTSRTSLLSHPFQIS+TLLRA+RRTSNFSQGVDN VD+
Sbjct: 1   MSLSAALSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDD 60

Query: 61  RRNWNR---SDFDLIGGEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRS 120
           RRNWNR   SDFDLIGGEEEE++++ED+DEEEDRSLDLLVRFVENVFRK SRRARKAVRS
Sbjct: 61  RRNWNRSIGSDFDLIGGEEEEDDDDEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVRS 120

Query: 121 VLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 180
           VLPQSIPTKLV FSVNGVLMLAFLWVLKAFLEVICTLGTAVF+SILIIRGVW GILYLQD
Sbjct: 121 VLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFLSILIIRGVWTGILYLQD 180

Query: 181 TRSHRLEQFDDDQHHAWTGAQPAS 202
           TR+HRL+Q DDDQH AWTGAQP S
Sbjct: 181 TRTHRLDQLDDDQHRAWTGAQPVS 204

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BLAST of Pay0007478 vs. NCBI nr
Match: XP_022988955.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima])

HSP 1 Score: 317.8 bits (813), Expect = 6.8e-83
Identity = 170/204 (83.33%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSLPA LSPPSL+SIP SQPP PTSRTS+LSH  QIS+TLLRA+RRTSNFSQGVD+ VD+
Sbjct: 1   MSLPAALSPPSLYSIPYSQPPLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNR---SDFDLIGGEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRS 120
           RRNWNR   SDFD+IGGE++E++E+E ++EEEDRSLDLLVRFVENVFRK S+RARKAVRS
Sbjct: 61  RRNWNRSISSDFDIIGGEDDEDDEDE-ENEEEDRSLDLLVRFVENVFRKVSKRARKAVRS 120

Query: 121 VLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 180
           VLPQSIPTKLV FSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYLQD
Sbjct: 121 VLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQD 180

Query: 181 TRSHRLEQFDDDQHHAWTGAQPAS 202
            RSHR ++ DDDQHHAWTGAQPAS
Sbjct: 181 IRSHRFDRLDDDQHHAWTGAQPAS 203

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BLAST of Pay0007478 vs. NCBI nr
Match: XP_022952196.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata] >XP_022952197.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata])

HSP 1 Score: 317.0 bits (811), Expect = 1.2e-82
Identity = 175/204 (85.78%), Postives = 185/204 (90.69%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSL A  SPPSLF++PQ QPPFPTSRT LLSHPFQ+S+ LLRA+RR SNFSQGVD+ VD+
Sbjct: 1   MSLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDD 60

Query: 61  RRNWN---RSDFDLIGGEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRS 120
           RRNWN    SDFDLIGG EEEEEEEED+DEEEDRSLDLLV+FVENVFRK SRRARKAVRS
Sbjct: 61  RRNWNGSIGSDFDLIGG-EEEEEEEEDEDEEEDRSLDLLVQFVENVFRKVSRRARKAVRS 120

Query: 121 VLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 180
           VLPQSIPTKLV F VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD
Sbjct: 121 VLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 180

Query: 181 TRSHRLEQFDDDQHHAWTGAQPAS 202
            RSHRL+Q DDDQ HAWTGAQPAS
Sbjct: 181 IRSHRLDQLDDDQPHAWTGAQPAS 203

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BLAST of Pay0007478 vs. TAIR 10
Match: AT4G33780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 179.1 bits (453), Expect = 3.5e-45
Identity = 110/201 (54.73%), Postives = 140/201 (69.65%), Query Frame = 0


Query: 2   SLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDER 61
           S+  + SP S F        F  +RT +   P+        A+RR+ +F  G D+F D+ 
Sbjct: 13  SVALLRSPLSFFIFTPKTLIF--TRTRISGFPY-------LASRRSRDFINGRDDFADDT 72

Query: 62  RNWNRSDFDLIGGEEEEEEEEEDDD-EEEDRSLDLLVRFVENVFRKSSRRARKAVRSVLP 121
           R+WNR      G +E+ + EE+DDD EEEDRSLDLL+RFVENVFRK S+RARKAVRS+LP
Sbjct: 73  RSWNRKIKPEYGFDEDYDGEEDDDDHEEEDRSLDLLLRFVENVFRKISKRARKAVRSILP 132

Query: 122 QSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTRS 181
            SI TKLV FSVNGVL+LAFLW+LKAFLEV CTLGT VF SIL+IRG+W G+ Y+Q++R+
Sbjct: 133 VSISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFTSILLIRGLWAGVAYMQESRN 192

Query: 182 HRLEQFDDDQHHAWTGAQPAS 202
           +R+ +  DD   AW G QP S
Sbjct: 193 NRINELADDP-RAWNGMQPVS 203

[Close]

BLAST of Pay0007478 vs. TAIR 10
Match: AT1G69935.1 (short hypocotyl in white light1 )

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-15
Identity = 58/151 (38.41%), Postives = 89/151 (58.94%), Query Frame = 0


Query: 33  PFQISYTLLRATRRTSNFSQGVDNFVDERRNWNRSDFDLIGGEE-----EEEEEEEDDDE 92
           PF  +   LR   R  N S    +    RR +   D    GG+      +++   +DDDE
Sbjct: 31  PFSSNSIFLRRRFRRLNRSL-ASSSSHSRRRYESDDRFFGGGDNYDVVPDDDGFSDDDDE 90

Query: 93  EEDR--SLDLLVRFVENVFRKSSRRARKAVRSVLPQSIPTKLVAFSVNGVLMLAFLWVLK 152
           E++R  S+DLL+RF+ ++F+K S+R +KA R +LP ++  +LV+F+V+G+L+L  L + +
Sbjct: 91  EDERESSVDLLIRFLRSMFKKVSKRTKKASRRILPAAMSPRLVSFAVDGILLLGSLSITR 150

Query: 153 AFLEVICTLGTAVFVSILIIRGVWIGILYLQ 177
           AFLEVIC LG  VF  IL+IR  W    + Q
Sbjct: 151 AFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

The following BLAST results are available for this feature:

BLAST of Pay0007478 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I3V6	3.1e-14	38.41	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1...	[more]

BLAST of Pay0007478 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C0Q8	5.1e-100	99.50	uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=...	[more]
A0A0A0K2W4	6.7e-92	93.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1	[more]
A0A6J1JL13	3.3e-83	83.33	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GJK6	5.6e-83	85.78	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1D3L5	5.6e-83	83.01	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of Pay0007478 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455053.1	1.0e-99	99.50	PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo]	[more]
XP_004136931.2	1.4e-91	93.07	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Cucumis sativus] >KGN43838.1 hypotheti...	[more]
XP_038877542.1	2.9e-89	88.73	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Benincasa hispida]	[more]
XP_022988955.1	6.8e-83	83.33	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]	[more]
XP_022952196.1	1.2e-82	85.78	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata] >XP_022952197...	[more]

BLAST of Pay0007478 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33780.1	3.5e-45	54.73	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G69935.1	2.2e-15	38.41	short hypocotyl in white light1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..90
None	No IPR available	PANTHER	PTHR35474:SF1	ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT	coord: 21..201
IPR039324	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1	PANTHER	PTHR35474	ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT	coord: 21..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0007478.1	Pay0007478.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010100	negative regulation of photomorphogenesis
biological_process	GO:0009787	regulation of abscisic acid-activated signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016757	glycosyltransferase activity