Pay0007216 (gene) Melon (Payzawat) v1

Overview


Name	Pay0007216
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrotransposon protein
Location	chr09: 9640698 .. 9641200 (-)
RNA-Seq Expression	Pay0007216
Synteny	Pay0007216

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACATAAAGGTCAATGTGCCCACAGCAGATCGCCTTACTTCAGAACGTGTAAGGGAGAAATTGTCACAAATGTACTGGGCATTTTTGACACGAAAGGGGATTTCGTATACATCCTCGTCGGTTGAGAAGGATCTGCAGCAGACTCGTAAATTCTACAGAATGCCCTTGCACGACAAAACGAACTCCAAGTGCCAAAGGGTGTTTACAATTTTTCATCAAACCAAGTCGTTTTATACTTACATATACAAAGCGCATAAAGCATTGGTTCGTATACAGAATATTATTATCTGTGCGATGCGGGATATCCTAACGCGGAGGGGTTTCTCGCCCTGTACAGAGGCCAGCGGTACCACTTCCAAGAGTGGCATGGTGTTGGAAATGCCCTAACCAATGCAAAGGAGTACTTCAACATAAAGCACACTTTGGCAAGGAATGTCATTAAGCGCGCCTTCAGTGTTCTAATGGGTCATTGGGCAATACGTCGTGAGAAGTCGTACTAA

mRNA sequence

ATGTACATAAAGGTCAATGTGCCCACAGCAGATCGCCTTACTTCAGAACGTGTAAGGGAGAAATTGTCACAAATGTACTGGGCATTTTTGACACGAAAGGGGATTTCGTATACATCCTCGTCGGTTGAGAAGGATCTGCAGCAGACTCGTAAATTCTACAGAATGCCCTTGCACGACAAAACGAACTCCAAGTGCCAAAGGGTGTTTACAATTTTTCATCAAACCAAGTCCATTGGTTCGTATACAGAATATTATTATCTGTGCGATGCGGGATATCCTAACGCGGAGGGGTTTCTCGCCCTGTACAGAGGCCAGCGGTACCACTTCCAAGAGTGGCATGGTGTTGGAAATGCCCTAACCAATGCAAAGGAGTACTTCAACATAAAGCACACTTTGGCAAGGAATGTCATTAAGCGCGCCTTCAGTGTTCTAATGGGTCATTGGGCAATACGTCGTGAGAAGTCGTACTAA

Coding sequence (CDS)

ATGTACATAAAGGTCAATGTGCCCACAGCAGATCGCCTTACTTCAGAACGTGTAAGGGAGAAATTGTCACAAATGTACTGGGCATTTTTGACACGAAAGGGGATTTCGTATACATCCTCGTCGGTTGAGAAGGATCTGCAGCAGACTCGTAAATTCTACAGAATGCCCTTGCACGACAAAACGAACTCCAAGTGCCAAAGGGTGTTTACAATTTTTCATCAAACCAAGTCCATTGGTTCGTATACAGAATATTATTATCTGTGCGATGCGGGATATCCTAACGCGGAGGGGTTTCTCGCCCTGTACAGAGGCCAGCGGTACCACTTCCAAGAGTGGCATGGTGTTGGAAATGCCCTAACCAATGCAAAGGAGTACTTCAACATAAAGCACACTTTGGCAAGGAATGTCATTAAGCGCGCCTTCAGTGTTCTAATGGGTCATTGGGCAATACGTCGTGAGAAGTCGTACTAA

Protein sequence

MYIKVNVPTADRLTSERVREKLSQMYWAFLTRKGISYTSSSVEKDLQQTRKFYRMPLHDKTNSKCQRVFTIFHQTKSIGSYTEYYYLCDAGYPNAEGFLALYRGQRYHFQEWHGVGNALTNAKEYFNIKHTLARNVIKRAFSVLMGHWAIRREKSY

Homology

[Close]

BLAST of Pay0007216 vs. ExPASy TrEMBL
Match: A0A1S3CQ57 (uncharacterized protein LOC103503430 OS=Cucumis melo OX=3656 GN=LOC103503430 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.6e-80
Identity = 152/167 (91.02%), Postives = 153/167 (91.62%), Query Frame = 0


Query: 1   MYIKVNVPTADRLTSERVREKLSQMYWAFLTRKGISYTSSSVEKDLQQTRKFYRMPLHDK 60
           MYIKVNVPTADRLTSERVREKLSQMYWAFLTRKGISYTSSSVEKDLQQTRKFYRMPLHDK
Sbjct: 1   MYIKVNVPTADRLTSERVREKLSQMYWAFLTRKGISYTSSSVEKDLQQTRKFYRMPLHDK 60

Query: 61  TNSKCQRVFTIFHQTKSIGSY-----------TEYYYLCDAGYPNAEGFLALYRGQRYHF 120
           TNSKCQRVFTIFHQTKS  +Y           TEYYYLCDAGYPNAEGFLA YRGQRYHF
Sbjct: 61  TNSKCQRVFTIFHQTKSFYTYIYKAHKALVFVTEYYYLCDAGYPNAEGFLAPYRGQRYHF 120

Query: 121 QEWHGVGNALTNAKEYFNIKHTLARNVIKRAFSVLMGHWAIRREKSY 157
           QEWHGVGNALTNAKEYFNIKHTLARNVIKRAFSVLMGHWAIRREKSY
Sbjct: 121 QEWHGVGNALTNAKEYFNIKHTLARNVIKRAFSVLMGHWAIRREKSY 167

[Close]

BLAST of Pay0007216 vs. ExPASy TrEMBL
Match: A0A5D3C1C7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002310 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 4.0e-36
Identity = 83/128 (64.84%), Postives = 90/128 (70.31%), Query Frame = 0


Query: 39  SSSVEKDLQQTRKFYRMPLHDKTNSKCQRVFTIFHQTKSIGSY-----------TEYYYL 98
           SSSV KDLQQTR FYRMPLHDK +SKCQRV TIFH+T    +Y             YYYL
Sbjct: 2   SSSVGKDLQQTRGFYRMPLHDKMDSKCQRVSTIFHETTPFCTYIFKAHKALVFVIGYYYL 61

Query: 99  CDAGYPNAEGFLALYRGQRYHFQEWHGVGNALTNAKEYFNIKHTLARNVIKRAFSVLMGH 156
           CDAGYPN E FLA YRGQ YH QEW G  NA TNAKEYFN+K + A+NVI+ AF VL G 
Sbjct: 62  CDAGYPNTEEFLASYRGQLYHLQEWRGAENASTNAKEYFNMKFSSAKNVIECAFHVLKGR 121

[Close]

BLAST of Pay0007216 vs. ExPASy TrEMBL
Match: A0A5D3DVC8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G001280 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.4e-35
Identity = 85/155 (54.84%), Postives = 92/155 (59.35%), Query Frame = 0


Query: 2   YIKVNVPTADRLTSERVREKLSQMYWAFLTRKGISYTSSSVEKDLQQTRKFYRMPLHDKT 61
           YIKVNVPT DR T    + K  Q +W   TRK IS+ SS V KD QQTR FY MP   K 
Sbjct: 139 YIKVNVPTGDRPTFRTRKGKFPQTFWGCATRKEISFMSSPVGKDPQQTRGFYVMPFTRKW 198

Query: 62  NSKCQRVFTIFHQTKSIGSYTEYYYLCDAGYPNAEGFLALYRGQRYHFQEWHGVGNALTN 121
                               T YYYLCDAGY NAEGFL  YRGQRYH QEW G  N  TN
Sbjct: 199 T-------------------TRYYYLCDAGYQNAEGFLVPYRGQRYHLQEWRGAANVPTN 258

Query: 122 AKEYFNIKHTLARNVIKRAFSVLMGHWAIRREKSY 157
             EYFN+K++ ARNVI+RAF VL G W I R KSY
Sbjct: 259 PNEYFNMKYSSARNVIQRAFGVLKGCWDILRGKSY 274

[Close]

BLAST of Pay0007216 vs. ExPASy TrEMBL
Match: A0A5A7VHS9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00190 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.4e-35
Identity = 85/155 (54.84%), Postives = 92/155 (59.35%), Query Frame = 0


Query: 2   YIKVNVPTADRLTSERVREKLSQMYWAFLTRKGISYTSSSVEKDLQQTRKFYRMPLHDKT 61
           YIKVNVPT DR T    + K  Q +W   TRK IS+ SS V KD QQTR FY MP   K 
Sbjct: 99  YIKVNVPTGDRPTFRTRKGKFPQTFWGCATRKEISFMSSPVGKDPQQTRGFYVMPFTRKW 158

Query: 62  NSKCQRVFTIFHQTKSIGSYTEYYYLCDAGYPNAEGFLALYRGQRYHFQEWHGVGNALTN 121
                               T YYYLCDAGY NAEGFL  YRGQRYH QEW G  N  TN
Sbjct: 159 T-------------------TRYYYLCDAGYQNAEGFLVPYRGQRYHLQEWRGAANVPTN 218

Query: 122 AKEYFNIKHTLARNVIKRAFSVLMGHWAIRREKSY 157
             EYFN+K++ ARNVI+RAF VL G W I R KSY
Sbjct: 219 PNEYFNMKYSSARNVIQRAFGVLKGCWDILRGKSY 234

[Close]

BLAST of Pay0007216 vs. ExPASy TrEMBL
Match: A0A5A7U7M7 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00820 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.9e-34
Identity = 85/144 (59.03%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 13  LTSERVREKLSQMYWAFLTRKGISYTSSSVEKDLQQTRKFYRMPLHDKTNSKCQRVFTIF 72
           L SE  + KL  MY    T KGISY SS V KD QQTRKF  M L +KTN KCQRVF I 
Sbjct: 54  LRSECRKGKLQLMYLTSATPKGISYMSSPVGKDPQQTRKFSGMSLPNKTNCKCQRVFRII 113

Query: 73  HQTKSIGSYTEYYYLCDAGYPNAEGFLALYRGQRYHFQEWHGVGNALTNAKEYFNIKHTL 132
                 G    YYYLCDAGYPNAE FL  YRGQ YH QE  G GN  T AKEYFN+KH+L
Sbjct: 114 IFVALFG--IRYYYLCDAGYPNAEKFLVPYRGQLYHLQECRGDGNTPTTAKEYFNMKHSL 173

Query: 133 ARNVIKRAFSVLMGHWAIRREKSY 157
            +NVI+ AF +L   W I R KSY
Sbjct: 174 TQNVIEYAFGILKSRWTILRGKSY 195

[Close]

BLAST of Pay0007216 vs. NCBI nr
Match: XP_008465835.1 (PREDICTED: uncharacterized protein LOC103503430 [Cucumis melo])

HSP 1 Score: 308.5 bits (789), Expect = 3.2e-80
Identity = 152/167 (91.02%), Postives = 153/167 (91.62%), Query Frame = 0


Query: 1   MYIKVNVPTADRLTSERVREKLSQMYWAFLTRKGISYTSSSVEKDLQQTRKFYRMPLHDK 60
           MYIKVNVPTADRLTSERVREKLSQMYWAFLTRKGISYTSSSVEKDLQQTRKFYRMPLHDK
Sbjct: 1   MYIKVNVPTADRLTSERVREKLSQMYWAFLTRKGISYTSSSVEKDLQQTRKFYRMPLHDK 60

Query: 61  TNSKCQRVFTIFHQTKSIGSY-----------TEYYYLCDAGYPNAEGFLALYRGQRYHF 120
           TNSKCQRVFTIFHQTKS  +Y           TEYYYLCDAGYPNAEGFLA YRGQRYHF
Sbjct: 61  TNSKCQRVFTIFHQTKSFYTYIYKAHKALVFVTEYYYLCDAGYPNAEGFLAPYRGQRYHF 120

Query: 121 QEWHGVGNALTNAKEYFNIKHTLARNVIKRAFSVLMGHWAIRREKSY 157
           QEWHGVGNALTNAKEYFNIKHTLARNVIKRAFSVLMGHWAIRREKSY
Sbjct: 121 QEWHGVGNALTNAKEYFNIKHTLARNVIKRAFSVLMGHWAIRREKSY 167

[Close]

BLAST of Pay0007216 vs. NCBI nr
Match: TYK05743.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 8.3e-36
Identity = 83/128 (64.84%), Postives = 90/128 (70.31%), Query Frame = 0


Query: 39  SSSVEKDLQQTRKFYRMPLHDKTNSKCQRVFTIFHQTKSIGSY-----------TEYYYL 98
           SSSV KDLQQTR FYRMPLHDK +SKCQRV TIFH+T    +Y             YYYL
Sbjct: 2   SSSVGKDLQQTRGFYRMPLHDKMDSKCQRVSTIFHETTPFCTYIFKAHKALVFVIGYYYL 61

Query: 99  CDAGYPNAEGFLALYRGQRYHFQEWHGVGNALTNAKEYFNIKHTLARNVIKRAFSVLMGH 156
           CDAGYPN E FLA YRGQ YH QEW G  NA TNAKEYFN+K + A+NVI+ AF VL G 
Sbjct: 62  CDAGYPNTEEFLASYRGQLYHLQEWRGAENASTNAKEYFNMKFSSAKNVIECAFHVLKGR 121

[Close]

BLAST of Pay0007216 vs. NCBI nr
Match: TYK27240.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 9.2e-35
Identity = 85/155 (54.84%), Postives = 92/155 (59.35%), Query Frame = 0


Query: 2   YIKVNVPTADRLTSERVREKLSQMYWAFLTRKGISYTSSSVEKDLQQTRKFYRMPLHDKT 61
           YIKVNVPT DR T    + K  Q +W   TRK IS+ SS V KD QQTR FY MP   K 
Sbjct: 139 YIKVNVPTGDRPTFRTRKGKFPQTFWGCATRKEISFMSSPVGKDPQQTRGFYVMPFTRKW 198

Query: 62  NSKCQRVFTIFHQTKSIGSYTEYYYLCDAGYPNAEGFLALYRGQRYHFQEWHGVGNALTN 121
                               T YYYLCDAGY NAEGFL  YRGQRYH QEW G  N  TN
Sbjct: 199 T-------------------TRYYYLCDAGYQNAEGFLVPYRGQRYHLQEWRGAANVPTN 258

Query: 122 AKEYFNIKHTLARNVIKRAFSVLMGHWAIRREKSY 157
             EYFN+K++ ARNVI+RAF VL G W I R KSY
Sbjct: 259 PNEYFNMKYSSARNVIQRAFGVLKGCWDILRGKSY 274

[Close]

BLAST of Pay0007216 vs. NCBI nr
Match: KAA0066904.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 9.2e-35
Identity = 85/155 (54.84%), Postives = 92/155 (59.35%), Query Frame = 0


Query: 2   YIKVNVPTADRLTSERVREKLSQMYWAFLTRKGISYTSSSVEKDLQQTRKFYRMPLHDKT 61
           YIKVNVPT DR T    + K  Q +W   TRK IS+ SS V KD QQTR FY MP   K 
Sbjct: 99  YIKVNVPTGDRPTFRTRKGKFPQTFWGCATRKEISFMSSPVGKDPQQTRGFYVMPFTRKW 158

Query: 62  NSKCQRVFTIFHQTKSIGSYTEYYYLCDAGYPNAEGFLALYRGQRYHFQEWHGVGNALTN 121
                               T YYYLCDAGY NAEGFL  YRGQRYH QEW G  N  TN
Sbjct: 159 T-------------------TRYYYLCDAGYQNAEGFLVPYRGQRYHLQEWRGAANVPTN 218

Query: 122 AKEYFNIKHTLARNVIKRAFSVLMGHWAIRREKSY 157
             EYFN+K++ ARNVI+RAF VL G W I R KSY
Sbjct: 219 PNEYFNMKYSSARNVIQRAFGVLKGCWDILRGKSY 234

[Close]

BLAST of Pay0007216 vs. NCBI nr
Match: KAA0049605.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK15963.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 5.9e-34
Identity = 85/144 (59.03%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 13  LTSERVREKLSQMYWAFLTRKGISYTSSSVEKDLQQTRKFYRMPLHDKTNSKCQRVFTIF 72
           L SE  + KL  MY    T KGISY SS V KD QQTRKF  M L +KTN KCQRVF I 
Sbjct: 54  LRSECRKGKLQLMYLTSATPKGISYMSSPVGKDPQQTRKFSGMSLPNKTNCKCQRVFRII 113

Query: 73  HQTKSIGSYTEYYYLCDAGYPNAEGFLALYRGQRYHFQEWHGVGNALTNAKEYFNIKHTL 132
                 G    YYYLCDAGYPNAE FL  YRGQ YH QE  G GN  T AKEYFN+KH+L
Sbjct: 114 IFVALFG--IRYYYLCDAGYPNAEKFLVPYRGQLYHLQECRGDGNTPTTAKEYFNMKHSL 173

Query: 133 ARNVIKRAFSVLMGHWAIRREKSY 157
            +NVI+ AF +L   W I R KSY
Sbjct: 174 TQNVIEYAFGILKSRWTILRGKSY 195

[Close]

BLAST of Pay0007216 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 29/78 (37.18%), Postives = 41/78 (52.56%), Query Frame = 0


Query: 73  HQTKSIGSYTEYYYLCDAGYPNAEGFLALYRGQRYHFQEWHGVGNALTNAKEYFNIKHTL 132
           H ++ +      +YL D G+ N   FLA +RG RYH QE+ G         E FN++H  
Sbjct: 37  HDSRVLSDALRKFYLVDCGFANRLNFLAPFRGVRYHLQEFAGQRRDPETPHELFNLRHVS 96

Query: 133 ARNVIKRAFSVLMGHWAI 151
            RNVI+R F +    +AI
Sbjct: 97  LRNVIERIFGIFKSRFAI 114

[Close]

BLAST of Pay0007216 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-07
Identity = 32/80 (40.00%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 82  TEYYYLCDAGYPNAEGFLALYRGQ-----RYHFQEWHGVGNALTNAKEYFNIKHTLARNV 141
           +E YYL D+GYPN +G LA YR       RYH  +++  G    N  E FN  HT  R+V
Sbjct: 250 SEKYYLVDSGYPNKQGLLAPYRSSRNRVVRYHMSQFY-YGPRPRNKHELFNQCHTSLRSV 309

Query: 142 IKRAFSVLMGHWAIRREKSY 157
           I+R F +    W  + E S+
Sbjct: 310 IERTFRI----WKNKMEDSF 324

The following BLAST results are available for this feature:

BLAST of Pay0007216 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0007216 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CQ57	1.6e-80	91.02	uncharacterized protein LOC103503430 OS=Cucumis melo OX=3656 GN=LOC103503430 PE=...	[more]
A0A5D3C1C7	4.0e-36	64.84	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DVC8	4.4e-35	54.84	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VHS9	4.4e-35	54.84	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U7M7	2.9e-34	59.03	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Pay0007216 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465835.1	3.2e-80	91.02	PREDICTED: uncharacterized protein LOC103503430 [Cucumis melo]	[more]
TYK05743.1	8.3e-36	64.84	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK27240.1	9.2e-35	54.84	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066904.1	9.2e-35	54.84	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049605.1	5.9e-34	59.03	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK15963.1 putative nucleas...	[more]

BLAST of Pay0007216 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35695.1	1.1e-09	37.18	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	1.3e-07	40.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930:SF212	NUCLEASE HARBI1 ISOFORM X1-RELATED	coord: 70..150
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 70..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0007216.1	Pay0007216.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding