Pay0007153 (gene) Melon (Payzawat) v1

Overview
NamePay0007153
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionras-related protein Rab11C-like isoform X2
Locationchr01: 18431349 .. 18434189 (-)
RNA-Seq ExpressionPay0007153
SyntenyPay0007153
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTCTAACATCTCTAATTTCTGAGTATAGAAATGGAACAAATTTTTGCTCTTATGGCAAAGCAAACAGAGAAGTTCAAGTGCACTGCCCACAAAGAGGTTAGTTTATTTATAACCTATATCAACTATTTAACTGTTTGAAATACTGCTTATTATTCCCAAGATATGATCAATTAACTCGGTTCTGCCTTTAAAATTTGTCAACTACAAATCAATTGCTAGTTAACTCGGGAGTAAATAAATATCTATAAAGTTAGGAAATGTTTAATGTCTGCCTCACATTCAATGATAATGCTTAATGATACAAAACATATCACATAGAAATTGGAGAAAATATAAACAATTCGGGGATTCTTCAATCCGGTTTTCAATTTGGGAATTCTCTTGCTCCTCGAATGTTTCCGTTTCAGCTACCTATTGCAAATGATTCCGATTCTTTTAATTTTGTTTACTCAATTGTTGAATTTGATGTTTTTGGATCAGGTTTGATCGAGAAATCTAGGGCACAGACAGCTATGGATCATAAGGTAGACCATGAGTATGACTATTTGTTCAAGATTGTTTTGATTGGGGATTCTGGTGTTAGGAAGTCCAACATTATTTCGAGATTTACTAGAAACGAGTTCTGCTTGCTGTCCAAATCCACCATTGATCTTTTAGGTTAGATAAACAAGTTTTGTTGACACTAGATATAAGACAACTAGTTTTGTTGATATTTTGTTAATACTGGATATAGGTGAACTAGTTTTGTTCATATTTTGTTGATATTGGATATAGGTAAAAGACAAGTTTTGATATGGTATACCTTTAGGCTACACATATATTTTGTTTATACCGACATATAGATGAAATGTTTAGGCTATTGTTAGGAGTTTGGGCTGCATATATATATGTTGTAATTAAATATGTAATGACCAACTAATATATATATGGTTCATTGATATATACATGCAATTTCTTTGAGGGAAAGTTTGAGTTGTGTTCAATTGTTCAATTAATGTGTATTTTATTGTTATTAGACATTAAAACAAGTGTAGGATAAATTATATGGATATTTTAAAATACATAATTTTTCATTTAAAAAAAAAACTTGATAGTAAACAAATTATTGACATGTAGAAAATGTCAAAAAACCTTATATACTTGATACCCAAAAACGTCAAGTATAATTTCACTTGACGCGTAAAAGCTGTAAAAAATAAAACCTCCTTATTCTTGACACTTAATTACTTGACGCATAAAACCTGTCAAGTATAGTTATATACTTGACGCTTTTCACCTGTCAAGTATAATTATACTTGACGCTTAAAAACTGTCAAGTAAACCTCCCTTATTCTTGACACTAGATTACTTGACACATTGAAAAGCGTCAAGTAAACCAATACTTGACATGTAAAAAGTGTAAAGTAAACCCAGTTTTGTAGTAGTGATGTCATAACATGTGACATGTGACCTAGGATATTTATGTTGGGTATTATTTGGAAGATGGAAATGCCCATGTGATGTTAATATCTTTATACGATATGTGATATAAAACTGGGTTTACTTTACGCTTTTTACATGTCAAGTATTGGTTTACTTGACACTTTTCAATGTGTTAAGTAATCCAGTGTCAAGAATAAGGGAGGTTTACTTGACAGTTTTAAAGCGTCAAATATAATTATACTTGACAGGTAAAAGCTAAAATGAGAATATCTTTATATGATATGTGATATAATGCCTTATTCTTTTGCTATTTGATCTAGGATAAGATGCTCTATAATTTCTGTGTGATTTAGAATAAAAGGCTCCATTCTTGTCGTGTGATATGGAATAGAATACCATATTCATGCTGTGTGATCTTGAATAGGATAACTTTTGCTTGTTGTGTGATCTAGCATTGGAAGACGCGTTATGCGTGAGAAAATTAATAGTGCTTTGAGATTTCTCTGCATGAAAATAACATGGCAAAAGAGTGTGGTAAACGCTTGAGCCAAGGAGAGGGTACAAGAAAATGTAATCGAATTTACAAAATGAATCTGCAGGACAAACATCTAGTATGCGAAAGGCATATGACAAGATAAACTTTGAAACCGTTGATTTTCATTCTGTTATGAAACCTATTTTGTAAATGGTTATGTGGCAATAAGGCAACCTTGATTTATTTGAAGTGCTCGATAAAAGATCTCACTCATTAGGCTCTTTCGTCTAACCTTCCAAATGTTTGGTTTTATCCCTCCCATGGGTAGCAAAGGACATCCGACATTGAACTTATTGTCTTGATTACCTAGCATGCTTCCTTAATCTCATTATTTTTGTAGTGATCATTGTAATCTCCCATAGCATGTAGAAGCTAGGCTAGAAAAGTCAAATCGTTGTTTGGAGTCTGTATTTCGTTTCTTTTGAAAGACTTGTGTACTAAGAATCATATGTGCCCTTTCAATTTATTTATCAATGAAGTTTTCTTGTTTCATTCATGTTCAAATTTATTGTTTAAATTACGTGGTTTAAAAAGTTGTTCCGCTTGCGTTAACGTGCTATCTTGTGGGGAGATATACGTTGAGTGACTAGGCGGCACGCCTCCAATTGGTTGCATGAAATAGTATTTGGAGCGGGACGGACAAGAATAATAATAATTCTTGACAATTAAAAAGTGTCAAGAGAGACTGTTTTTGTAGTAGTGAACATTCATTGACCTTCATTTTCTTTTTCAAGGTGTTAAAGCTCCACACATCTAGGTGATTGGAATCCTAAAGCATAATGGGGAAGCTCTTATGGTGGTGTCCTTGTTTGTTGAGAGGTTCAAGTTTGTTCGAGACCAAAGGAGAGCAAATGGTGAAGAAATGGTGGAATCTTAA

mRNA sequence

ATGGCATCTCTAACATCTCTAATTTCTGAGTATAGAAATGGAACAAATTTTTGCTCTTATGGCAAAGCAAACAGAGAAGTTCAAGTGCACTGCCCACAAAGAGGTTTGATCGAGAAATCTAGGGCACAGACAGCTATGGATCATAAGGTGATTGGAATCCTAAAGCATAATGGGGAAGCTCTTATGGTGGTGTCCTTGTTTGTTGAGAGGTTCAAGTTTGTTCGAGACCAAAGGAGAGCAAATGGTGAAGAAATGGTGGAATCTTAA

Coding sequence (CDS)

ATGGCATCTCTAACATCTCTAATTTCTGAGTATAGAAATGGAACAAATTTTTGCTCTTATGGCAAAGCAAACAGAGAAGTTCAAGTGCACTGCCCACAAAGAGGTTTGATCGAGAAATCTAGGGCACAGACAGCTATGGATCATAAGGTGATTGGAATCCTAAAGCATAATGGGGAAGCTCTTATGGTGGTGTCCTTGTTTGTTGAGAGGTTCAAGTTTGTTCGAGACCAAAGGAGAGCAAATGGTGAAGAAATGGTGGAATCTTAA

Protein sequence

MASLTSLISEYRNGTNFCSYGKANREVQVHCPQRGLIEKSRAQTAMDHKVIGILKHNGEALMVVSLFVERFKFVRDQRRANGEEMVES
Homology
[Close]
BLAST of Pay0007153 vs. ExPASy TrEMBL
Match: A0A1S3CFW6 (ras-related protein Rab11C-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500284 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-11
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 7  LISEYRNGTNFCSYGKANREVQVHCPQRGLIEKSRAQTAMDHKV 51
          +I  YRN TNFCSYGK NREVQVHCP RGL +KSRA+TAM HKV
Sbjct: 1  MIGSYRNETNFCSYGKVNREVQVHCPPRGLFKKSRAETAMAHKV 44

[Close]
BLAST of Pay0007153 vs. ExPASy TrEMBL
Match: A0A1S3CFF6 (ras-related protein Rab11C-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500284 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 12 RNGTNFCSYGKANREVQVHCPQRGLIEKSRAQTAMDHKV 51
          RN TNFCSYGK NREVQVHCP RGL +KSRA+TAM HKV
Sbjct: 7  RNETNFCSYGKVNREVQVHCPPRGLFKKSRAETAMAHKV 45

[Close]
BLAST of Pay0007153 vs. ExPASy TrEMBL
Match: A0A5A7UGE0 (Ras-related protein Rab11C-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00340 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 12  RNGTNFCSYGKANREVQVHCPQRGLIEKSRAQTAMDHKV 51
           RN TNFCSYGK NREVQVHCP RGL +KSRA+TAM HKV
Sbjct: 97  RNETNFCSYGKVNREVQVHCPPRGLFKKSRAETAMAHKV 135

[Close]
BLAST of Pay0007153 vs. ExPASy TrEMBL
Match: A0A1S3BJ02 (ras-related protein Rab11C-like OS=Cucumis melo OX=3656 GN=LOC103490420 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 12 RNGTNFCSYGKANREVQVHCPQRGLIEKSRAQTAMDHKV 51
          RN TNFCSYGK NREVQ+HCP RGL +KSR +T M HKV
Sbjct: 7  RNETNFCSYGKVNREVQLHCPPRGLFKKSRVETTMAHKV 45

[Close]
BLAST of Pay0007153 vs. NCBI nr
Match: XP_008461756.1 (PREDICTED: ras-related protein Rab11C-like isoform X2 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 6.8e-11
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 7  LISEYRNGTNFCSYGKANREVQVHCPQRGLIEKSRAQTAMDHKV 51
          +I  YRN TNFCSYGK NREVQVHCP RGL +KSRA+TAM HKV
Sbjct: 1  MIGSYRNETNFCSYGKVNREVQVHCPPRGLFKKSRAETAMAHKV 44

[Close]
BLAST of Pay0007153 vs. NCBI nr
Match: KAA0052805.1 (ras-related protein Rab11C-like isoform X2 [Cucumis melo var. makuwa] >TYK04163.1 ras-related protein Rab11C-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-09
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 12  RNGTNFCSYGKANREVQVHCPQRGLIEKSRAQTAMDHKV 51
           RN TNFCSYGK NREVQVHCP RGL +KSRA+TAM HKV
Sbjct: 97  RNETNFCSYGKVNREVQVHCPPRGLFKKSRAETAMAHKV 135

[Close]
BLAST of Pay0007153 vs. NCBI nr
Match: XP_008461753.1 (PREDICTED: ras-related protein Rab11C-like isoform X1 [Cucumis melo] >XP_008461755.1 PREDICTED: ras-related protein Rab11C-like isoform X1 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-09
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 12 RNGTNFCSYGKANREVQVHCPQRGLIEKSRAQTAMDHKV 51
          RN TNFCSYGK NREVQVHCP RGL +KSRA+TAM HKV
Sbjct: 7  RNETNFCSYGKVNREVQVHCPPRGLFKKSRAETAMAHKV 45

[Close]
BLAST of Pay0007153 vs. NCBI nr
Match: XP_008448132.1 (PREDICTED: ras-related protein Rab11C-like [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 5.4e-08
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 12 RNGTNFCSYGKANREVQVHCPQRGLIEKSRAQTAMDHKV 51
          RN TNFCSYGK NREVQ+HCP RGL +KSR +T M HKV
Sbjct: 7  RNETNFCSYGKVNREVQLHCPPRGLFKKSRVETTMAHKV 45

The following BLAST results are available for this feature:
BLAST of Pay0007153 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0007153 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CFW63.3e-1177.27ras-related protein Rab11C-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1035002... [more]
A0A1S3CFF61.4e-0982.05ras-related protein Rab11C-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1035002... [more]
A0A5A7UGE01.4e-0982.05Ras-related protein Rab11C-like isoform X2 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3BJ022.6e-0874.36ras-related protein Rab11C-like OS=Cucumis melo OX=3656 GN=LOC103490420 PE=4 SV=... [more]
BLAST of Pay0007153 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008461756.16.8e-1177.27PREDICTED: ras-related protein Rab11C-like isoform X2 [Cucumis melo][more]
KAA0052805.12.9e-0982.05ras-related protein Rab11C-like isoform X2 [Cucumis melo var. makuwa] >TYK04163.... [more]
XP_008461753.12.9e-0982.05PREDICTED: ras-related protein Rab11C-like isoform X1 [Cucumis melo] >XP_0084617... [more]
XP_008448132.15.4e-0874.36PREDICTED: ras-related protein Rab11C-like [Cucumis melo][more]
BLAST of Pay0007153 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0007153.1Pay0007153.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding