Pay0006643 (gene) Melon (Payzawat) v1

Overview


Name	Pay0006643
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	high mobility group B protein 1
Location	chr08: 31849108 .. 31852948 (-)
RNA-Seq Expression	Pay0006643
Synteny	Pay0006643

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGGCAATAATCATTTCCACAAAACCCAAAAGATAATTCCTTTCCGATCGTATTCATCATATATTCTTCCTCTTTTATTTGTTTATTTATTAAAATACCGGTCACTGGCTATTGCCAGTAAGAGGTCGCTCTTCCGGGGCTCTCGTGTGGCGGTAACAGTTGCATGTGTTACAGGTCGTTCCGGTTACTCTAAATCAATTCCCTTCTCTCCCTGGGTTGTTTCTTTTGAATTCTTTTCTCTTCTTCTATTCTCTCTCTCTCTCTCTCTCAGTCTTTGAAAAATCTCTGGTATTGATTCTCTTCTTTCCTTTCCGATTCCTTTTGGATCGGACGGCTTGCTTCATCTAAGGTAATCGATTCTCTCCTTTCCAGATCTCTTCTCGTCTTTGTTCGTTCTAATTTTAATCTGATTCTGTTTGTTTTTCCTGTATAATTATCGTCTGTTCTACCTAATTTCTTGCGTTTTTAAGGTCTTGTTGCGTTTTTCCTTCTAATTCTGTGGAGAATGATCGTTTTTTGAGCTATTTGTGCCGTTTTATTTATTTATTTATTATCTTAATAATTTATGCTGGAGTTGTTTTGAGTGAAGTGAAGAAACAAGTAGCAGTACGAGTTCAAGAGTTGAAGTTGTGGTAATTAATTACATTTTAGGTTTATTTTTCAGTTTAATGCTCTGTTAGCGATTTAACACAGGTGATTTTTCTTATGCGATAGACTTGGAGTCGACAGAATCTAGTTTTGCTTTATTGTATGTAGTTTTCTACTGTGAATTATCTGTAGCTGGCTGATTGTTAGTTTGTCGATTCTACAGATAGCTTTTAAAATTGAAATTTAGGGATTCTGGTCTCATTAAGGTCAAATATGTTCAAGAACATGTATAGTATTACTATTTACTTTTGTTTGCTTCTGGATGTCTGGATGTTCATGTTCGGCAGTCATTACGTATCATATAGACTTCGTGTTCCTTTGACTTTTGTGAAAACAGTTTCTAGAGGTTGCTTTCACTGCATTTGTGCACGTTGGCATGTACTTTTATGTTAGAAATTGTCTTTATTGTTTCCTGTACTGTTTGAGGTACTGCTCCTTAGTTTGGCTCAAATTGTTCTTGTCCTGATTTTCGTGCATGTAGGTTGTTGTTTCTTAAACTATAGGAGTTGTACTAACTTGCTGTATTGTTATACTGCTGCTCAACGAGTAGTTATTTTGTACAGGTCTTTGCCTTTCATAATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCCAAAGAAGCTTTGAAGCCAGTCGATGATAGGTAGTTTTTTGCCTATTGTTCCACTACATGTCTCTTATGTTATTGGTCTGATGAAAGTTCCGTAAATTGTTCAGTTATGCCTGTCTGTGATCCATTGTTGGCATCTTTTTTTTTGAGTATCGAATTTCCAGCAAGTTTTTGACTTCCATTGATGTCTAATATTCACATACTTGGTTATGTGTATACAGTGTTTACAGGAATTTTGTAGTGACGGATCATAAATATCTCATTTCTTTTCAGAAAGGTTGGGAAGCGAAAGGCTGTTGTTAAAGCTGACAAGGGTACCAAACGACCAACAAAGAAAGATTTGAAAGCCAAGAAAGATCCCAACAAACCAAAGAGGCCTCCGAGTGCTTTCTTTGTTTTCCTGTTCGTATTTGTTCTCTGCCGTTTTGTCTTCATTTGTTTGATTTCCTTAAGAAGAAAAATTCTCTTATTTGGTTATATTTATATAACAGTGAGGAGTTCAGAAAGGAGTACAAAAGGGAAAATCCTAATGTGAAGGCAGTATCTGCAGTATGTGATCTGTGAAACTGATCTAATGATTCACATAATTCCCAATTGGTGATGCAAATATAGAGTAACTTACTAACATTTTCTCCACTCCTGCAGGTCGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTAAGTCACGCTGTAAGTATTATTGTGCATTACATAAAAATGAAAGCATGCTTAATCCTTGAGTCTTTTCCCTTTTTACTGCATGCATTTATGTATGATGATGAATGAAACACTGTTTATAGAGCTGTGGTATTCGTGTTGCTGCCAAATCTTGAAACCAGCGTCACTTTCAGCAATCTTGTATTGAATATCAAGTTGATACGTGTGTGCATGCTTTTTTTTCTTTGCCTTTTTCATTTTGTTGTGTTTTAATAATTTTTTTATGAGAAATCATAACTTTCATTGAGAAGAAAATGAAATAATATAAGAGCATACAAAAAAACCAATCCACAAAAAACAACTCAACTGAAGGAAGGGAGACCATCTGAAGGCAATGAAAGAATCACAACTTAATAGTTTTTCTGCCTCTGTATTGATATTTTCTTACATTTGGGCATTTACACTTTTATTCTCTCAACAGTATTTTACATTTTGCGTTTCTTTATATAATAACTTCTTAATGGTTTAAAAGGAAAAAGCACCATATGAAGCCAAGGCAGCTAAGAGGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAGGTAGTTGTGCTCTGTTTTTTTGTGTATTAATTAAATTTACAAGACATGACTCCAAACTTAAAGTGCTCATACACCTTTTTTCGGGAATATAGGCCAGCGCAGCAGATGACGAAGAATCAGAGAGGTCAAAATCTGAAGTGAATGACGAGGATGAGGCCAGTGAGGAGGTATTTTTTTAATACATAAGAAGGAAATGCTACAATGCTTGTTTTTAGAGCGTGTCTATGCATTTCAGTTCATAGTAAGCCAATTAAGATCCCTCTCTGCTGTTATTTATTTTTTTTTTTTGAAGTTGAAAGTAACAAAAATTTATAGATCAGAGAACACTTTTGGATTAGTTGGTAATAATTTCATTTTCGCACCTTTAAATTTGTAACCATTTGGTTTATGGTCTTTAATAAGTAACAAATCTGATCTCCTTGCTTTATAATTTGTAAGAGTCTATTTCCTATCGTGAAAGCATCTAATCTTCAACGGTATATCAATAAAATTTCATTAAATCATGTCATTCTAAACTCTAGAGAGTAAATTGGTTCTTATTAAGGTTCAAGGACAATTAGTATTGTAACTCCCTCGCAGCCAACGCCAATAACAAGAATGCAATAGAAAGGGCATGGATTTGGTAAAAGTAGAATTAGGGTTTCATAAAATTTGACTATTAAACCACTTGCAGGAGCATCAAGAAGAGGATGATGAGGACGAGGAAGATGATGAAGATGATGACTAAATTGAAAGCCAACTTGTTTGTATCGGCCAACCCAGCTGGTAGAGGGAGGAAGGTGATGTATGTTCATATATCTTTGCATGCTTTCTGTTCATTTTGTATTTGTGTGCAACATGATAACGTGTCAGAATATCTTTACTTGTTTTAATGGTCTCCTTCACTTTACATCCCCTTTGTCATATTACATTGTTAAAATCTTGGGGGTATTTTGGCCTTTCTTTTGATAACCAATATGAAATTATCAAATACATCTTTTGGAAGCTGTACTTCAACCTTTTGCCACCTTTTACTCTTCTAGCGCTCTTCGCAGTTTAAAATCATCTTTGCCAACATTGTAGTCTAACCGATAATTATTATCGATCTTTTAACTGTACAAATTTTAGAGGAATTTCCAGAACTTCATGGATCGTTTTATTAGCAAATTTTTAATGTTTCCATAATTACCTTCGACTGTAGTTTTCTCTAATATTCCAATCTTTGAAGGGTGACAATTGTAATTAATATATATAGTTTTTTTGCATTTGCTAGACACAAAATGGAATGTACAAATTATACAATAAAATTTCTAGGAGGTCAAGGGCCCC

mRNA sequence

GGCGGCAATAATCATTTCCACAAAACCCAAAAGATAATTCCTTTCCGATCGTATTCATCATATATTCTTCCTCTTTTATTTGTTTATTTATTAAAATACCGGTCACTGGCTATTGCCAGTAAGAGGTCGCTCTTCCGGGGCTCTCGTGTGGCGGTAACAGTTGCATGTGTTACAGGTCGTTCCGGTTACTCTAAATCAATTCCCTTCTCTCCCTGGGTTGTTTCTTTTGAATTCTTTTCTCTTCTTCTATTCTCTCTCTCTCTCTCTCTCAGTCTTTGAAAAATCTCTGGTATTGATTCTCTTCTTTCCTTTCCGATTCCTTTTGGATCGGACGGCTTGCTTCATCTAAGTTATTTTGTACAGGTCTTTGCCTTTCATAATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCCAAAGAAGCTTTGAAGCCAGTCGATGATAGAAAGGTTGGGAAGCGAAAGGCTGTTGTTAAAGCTGACAAGGGTACCAAACGACCAACAAAGAAAGATTTGAAAGCCAAGAAAGATCCCAACAAACCAAAGAGGCCTCCGAGTGCTTTCTTTGTTTTCCTTGAGGAGTTCAGAAAGGAGTACAAAAGGGAAAATCCTAATGTGAAGGCAGTATCTGCAGTCGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTAAGTCACGCTGAAAAAGCACCATATGAAGCCAAGGCAGCTAAGAGGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAGGCCAGCGCAGCAGATGACGAAGAATCAGAGAGGTCAAAATCTGAAGTGAATGACGAGGATGAGGCCAGTGAGGAGGAGCATCAAGAAGAGGATGATGAGGACGAGGAAGATGATGAAGATGATGACTAAATTGAAAGCCAACTTGTTTGTATCGGCCAACCCAGCTGGTAGAGGGAGGAAGGTGATGTATGTTCATATATCTTTGCATGCTTTCTGTTCATTTTGTATTTGTGTGCAACATGATAACGTGTCAGAATATCTTTACTTGTTTTAATGGTCTCCTTCACTTTACATCCCCTTTGTCATATTACATTGTTAAAATCTTGGGGGTATTTTGGCCTTTCTTTTGATAACCAATATGAAATTATCAAATACATCTTTTGGAAGCTGTACTTCAACCTTTTGCCACCTTTTACTCTTCTAGCGCTCTTCGCAGTTTAAAATCATCTTTGCCAACATTGTAGTCTAACCGATAATTATTATCGATCTTTTAACTGTACAAATTTTAGAGGAATTTCCAGAACTTCATGGATCGTTTTATTAGCAAATTTTTAATGTTTCCATAATTACCTTCGACTGTAGTTTTCTCTAATATTCCAATCTTTGAAGGGTGACAATTGTAATTAATATATATAGTTTTTTTGCATTTGCTAGACACAAAATGGAATGTACAAATTATACAATAAAATTTCTAGGAGGTCAAGGGCCCC

Coding sequence (CDS)

ATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCCAAAGAAGCTTTGAAGCCAGTCGATGATAGAAAGGTTGGGAAGCGAAAGGCTGTTGTTAAAGCTGACAAGGGTACCAAACGACCAACAAAGAAAGATTTGAAAGCCAAGAAAGATCCCAACAAACCAAAGAGGCCTCCGAGTGCTTTCTTTGTTTTCCTTGAGGAGTTCAGAAAGGAGTACAAAAGGGAAAATCCTAATGTGAAGGCAGTATCTGCAGTCGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTAAGTCACGCTGAAAAAGCACCATATGAAGCCAAGGCAGCTAAGAGGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAGGCCAGCGCAGCAGATGACGAAGAATCAGAGAGGTCAAAATCTGAAGTGAATGACGAGGATGAGGCCAGTGAGGAGGAGCATCAAGAAGAGGATGATGAGGACGAGGAAGATGATGAAGATGATGACTAA

Protein sequence

MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEDEEDDEDDD

Homology

[Close]

BLAST of Pay0006643 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.7e-43
Identity = 119/177 (67.23%), Postives = 140/177 (79.10%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEH--------QEEDDEDEEDDEDDD 170
            AY+      +D  ESE+S+SE+NDEDEAS EE          +E++E+EEDD+DDD
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGEEELLEKEAAGDDEEEEEEEDDDDDD 173

[Close]

BLAST of Pay0006643 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.5e-28
Identity = 92/163 (56.44%), Postives = 112/163 (68.71%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKG K K  S+ +   L       V K+ A  KA    ++P  K  KA KDPNKPKRPPS
Sbjct: 1   MKGGKSKTESKRADPKL------AVNKKGAATKA----RKPAGKG-KAAKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVF+EEFRK + +E+P  KAVSAVGKA G KWK++S AEKAPY AK+ KRK EYEK M
Sbjct: 61  AFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNM 120

Query: 121 RAYDSKKA---SAADDEESERSKSEVNDEDEASEEEHQEEDDE 161
           RAY+ K+A   +  D+EESE+S SEVNDED+  E   +EEDD+
Sbjct: 121 RAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

[Close]

BLAST of Pay0006643 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.1e-27
Identity = 84/140 (60.00%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 24  KVGKRKAVVKADK--GTKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVK 83
           K  K KA  ++ K   TK+P K    A KDPNKPKRP SAFFVF+E+FR  YK E+P  K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 84  AVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAYDSK-KASAADDEESERSK 143
           +V+AVGKAGGEKWKSLS +EKAPY AKA KRK EYEK M+AY+ K +    +DEES++S 
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSV 121

Query: 144 SEVNDEDEASEEEHQEEDDE 161
           SEVNDED+A +   +EEDD+
Sbjct: 122 SEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of Pay0006643 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-26
Identity = 87/165 (52.73%), Postives = 112/165 (67.88%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKG K KG S+ +        + K+   K    A KG K+P K   K  KDPNKPKRPPS
Sbjct: 1   MKGGKSKGESKKA--------ETKLAVNKKGAAATKGGKKPAKG--KEPKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVF+ +FR++YK+++PN K+V+AVGKA GE+WKSLS  EKAPY  +A K+K EYE  +
Sbjct: 61  AFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITL 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEDEEDD 166
           +AY+ K     D+E S++SKSEVNDEDE       EED+EDE+DD
Sbjct: 121 QAYNKKLEGKDDEEGSDKSKSEVNDEDE------DEEDEEDEDDD 149

[Close]

BLAST of Pay0006643 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.1e-26
Identity = 82/161 (50.93%), Postives = 108/161 (67.08%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKG+K K  +R SK ++     +  G+ KA                 A KDPNKPKRP S
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKA-----------------AAKDPNKPKRPAS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVF+E+FR+ +K+ENP  K+V+ VGKA G+KWKSLS +EKAPY AKA KRK EYEK +
Sbjct: 61  AFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNI 120

Query: 121 RAYDSK-KASAADDEESERSKSEVNDEDEASEEEHQEEDDE 161
           +AY+ K +    +DEES++S SEVNDED+A +   +EEDD+
Sbjct: 121 KAYNKKLEEGPKEDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of Pay0006643 vs. ExPASy TrEMBL
Match: A0A1S3BML2 (high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.9e-72
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDD-EDEEDDEDDD 170
           RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDD EDEEDDEDDD
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEEDDEDDD 170

[Close]

BLAST of Pay0006643 vs. ExPASy TrEMBL
Match: A0A0A0L1B2 (HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.4e-71
Identity = 164/169 (97.04%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKG KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEDEEDDEDDD 170
           RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQE+DDE++EDDE+DD
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEDDDEEDEDDEEDD 169

[Close]

BLAST of Pay0006643 vs. ExPASy TrEMBL
Match: A0A5A7SRU9 (High mobility group B protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold994G00070 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.1e-69
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
           RAYDSKKASAADDEESERSKSEVNDEDEASEE
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of Pay0006643 vs. ExPASy TrEMBL
Match: A0A6J1DBK9 (high mobility group B protein 1 OS=Momordica charantia OX=3673 GN=LOC111019485 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 9.9e-65
Identity = 153/169 (90.53%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEDEEDDEDDD 170
           RAYDSKKAS   DEESERSKSEVNDEDEASEEEHQ++DD+ EEDDEDD+
Sbjct: 121 RAYDSKKAS---DEESERSKSEVNDEDEASEEEHQDDDDDAEEDDEDDE 166

[Close]

BLAST of Pay0006643 vs. ExPASy TrEMBL
Match: A0A6J1ISM4 (high mobility group B protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478326 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.2e-62
Identity = 147/169 (86.98%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKG KGKGTSRVSKEALKPVDDRKVGKRKA +KADKG KRPTKK+LKA KDPNKPKRPPS
Sbjct: 1   MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFR+EYKRENPNVKAVSAVGKAGG++W+SL+H EKAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEDEEDDEDDD 170
           RAYDSKKAS ADDEE ERSKSEVN ED+ASEEEH E+D+E+EE+DEDD+
Sbjct: 121 RAYDSKKASEADDEELERSKSEVNGEDDASEEEHHEDDEEEEEEDEDDE 169

[Close]

BLAST of Pay0006643 vs. NCBI nr
Match: XP_008449957.1 (PREDICTED: high mobility group B protein 1 [Cucumis melo] >XP_008449965.1 PREDICTED: high mobility group B protein 1 [Cucumis melo])

HSP 1 Score: 281.2 bits (718), Expect = 6.0e-72
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDD-EDEEDDEDDD 170
           RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDD EDEEDDEDDD
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEEDDEDDD 170

[Close]

BLAST of Pay0006643 vs. NCBI nr
Match: XP_011653690.1 (high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 high mobility group B protein 1 [Cucumis sativus] >XP_031740703.1 high mobility group B protein 1 [Cucumis sativus] >KGN54377.1 hypothetical protein Csa_017866 [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 5.0e-71
Identity = 164/169 (97.04%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKG KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEDEEDDEDDD 170
           RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQE+DDE++EDDE+DD
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEDDDEEDEDDEEDD 169

[Close]

BLAST of Pay0006643 vs. NCBI nr
Match: XP_038883904.1 (high mobility group B protein 1 [Benincasa hispida] >XP_038883905.1 high mobility group B protein 1 [Benincasa hispida] >XP_038883906.1 high mobility group B protein 1 [Benincasa hispida])

HSP 1 Score: 271.6 bits (693), Expect = 4.7e-69
Identity = 159/169 (94.08%), Postives = 166/169 (98.22%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA VKADKG  RPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGVNRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEA+AAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEARAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEDEEDDEDDD 170
           +AYDSKKASAADDEESERSKSEVNDEDEASEEEHQE+DDED+++DED+D
Sbjct: 121 KAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEDDDEDDDEDEDED 169

[Close]

BLAST of Pay0006643 vs. NCBI nr
Match: KAA0031875.1 (high mobility group B protein 1 [Cucumis melo var. makuwa] >TYK09515.1 high mobility group B protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
           RAYDSKKASAADDEESERSKSEVNDEDEASEE
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of Pay0006643 vs. NCBI nr
Match: XP_022151579.1 (high mobility group B protein 1 [Momordica charantia] >XP_022151580.1 high mobility group B protein 1 [Momordica charantia])

HSP 1 Score: 256.1 bits (653), Expect = 2.1e-64
Identity = 153/169 (90.53%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEDEEDDEDDD 170
           RAYDSKKAS   DEESERSKSEVNDEDEASEEEHQ++DD+ EEDDEDD+
Sbjct: 121 RAYDSKKAS---DEESERSKSEVNDEDEASEEEHQDDDDDAEEDDEDDE 166

[Close]

BLAST of Pay0006643 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 182.6 bits (462), Expect = 2.7e-46
Identity = 116/165 (70.30%), Postives = 136/165 (82.42%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEDEEDD 166
            AY+      +D  ESE+S+SE+NDEDEAS EE  ++DD+DEE+D
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGEEEDDDDDDDEEED 161

[Close]

BLAST of Pay0006643 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-44
Identity = 119/177 (67.23%), Postives = 140/177 (79.10%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEH--------QEEDDEDEEDDEDDD 170
            AY+      +D  ESE+S+SE+NDEDEAS EE          +E++E+EEDD+DDD
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGEEELLEKEAAGDDEEEEEEEDDDDDD 173

[Close]

BLAST of Pay0006643 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-44
Identity = 119/177 (67.23%), Postives = 140/177 (79.10%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEH--------QEEDDEDEEDDEDDD 170
            AY+      +D  ESE+S+SE+NDEDEAS EE          +E++E+EEDD+DDD
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGEEELLEKEAAGDDEEEEEEEDDDDDD 173

[Close]

BLAST of Pay0006643 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 174.5 bits (441), Expect = 7.3e-44
Identity = 119/189 (62.96%), Postives = 141/189 (74.60%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEAS---------------------EEEHQEEDD 169
            AY+      +D  ESE+S+SE+NDEDEAS                     EEE +EEDD
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGEVTIPLSNEELLEKEAAGDDEEEEEEEDD 180

[Close]

BLAST of Pay0006643 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-28
Identity = 84/140 (60.00%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 24  KVGKRKAVVKADK--GTKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVK 83
           K  K KA  ++ K   TK+P K    A KDPNKPKRP SAFFVF+E+FR  YK E+P  K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 84  AVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAYDSK-KASAADDEESERSK 143
           +V+AVGKAGGEKWKSLS +EKAPY AKA KRK EYEK M+AY+ K +    +DEES++S 
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSV 121

Query: 144 SEVNDEDEASEEEHQEEDDE 161
           SEVNDED+A +   +EEDD+
Sbjct: 122 SEVNDEDDAEDGSEEEEDDD 141

The following BLAST results are available for this feature:

BLAST of Pay0006643 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49595	2.7e-43	67.23	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P26585	5.5e-28	56.44	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	2.1e-27	60.00	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40620	1.8e-26	52.73	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]
O49596	5.1e-26	50.93	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]

BLAST of Pay0006643 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BML2	2.9e-72	99.41	high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=3 SV=...	[more]
A0A0A0L1B2	2.4e-71	97.04	HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=...	[more]
A0A5A7SRU9	5.1e-69	100.00	High mobility group B protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1DBK9	9.9e-65	90.53	high mobility group B protein 1 OS=Momordica charantia OX=3673 GN=LOC111019485 P...	[more]
A0A6J1ISM4	1.2e-62	86.98	high mobility group B protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478326...	[more]

BLAST of Pay0006643 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449957.1	6.0e-72	99.41	PREDICTED: high mobility group B protein 1 [Cucumis melo] >XP_008449965.1 PREDIC...	[more]
XP_011653690.1	5.0e-71	97.04	high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 high mobility ...	[more]
XP_038883904.1	4.7e-69	94.08	high mobility group B protein 1 [Benincasa hispida] >XP_038883905.1 high mobilit...	[more]
KAA0031875.1	1.1e-68	100.00	high mobility group B protein 1 [Cucumis melo var. makuwa] >TYK09515.1 high mobi...	[more]
XP_022151579.1	2.1e-64	90.53	high mobility group B protein 1 [Momordica charantia] >XP_022151580.1 high mobil...	[more]

BLAST of Pay0006643 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51880.4	2.7e-46	70.30	high mobility group B1	[more]
AT3G51880.1	1.9e-44	67.23	high mobility group B1	[more]
AT3G51880.3	1.9e-44	67.23	high mobility group B1	[more]
AT3G51880.2	7.3e-44	62.96	high mobility group B1	[more]
AT1G20696.1	1.5e-28	60.00	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 54..125 e-value: 2.4E-25 score: 100.2
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 55..123 e-value: 1.4E-23 score: 83.1
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 55..124 score: 19.726849
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 27..139 e-value: 1.1E-25 score: 91.9
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 47..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..111
None	No IPR available	PANTHER	PTHR46261:SF1	HIGH MOBILITY GROUP B PROTEIN 1	coord: 1..163
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 55..121 e-value: 2.36816E-15 score: 64.9565
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0006643.1	Pay0006643.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin