Pay0006634 (gene) Melon (Payzawat) v1

Overview


Name	Pay0006634
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	recQ-mediated genome instability protein 2
Location	chr12: 9748990 .. 9751508 (+)
RNA-Seq Expression	Pay0006634
Synteny	Pay0006634

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGGACAAATTAAATGTACTGCTAGGAGTGAATAATAAAATTTTGCAAATATTTGGATTACATTTGCTGTATATTTGAAAAACAGCCATTTATATAAAGAAGCTTTTTAAATTTAGAGCAATTTTGGAAGCAGCCGGACATGGACTACAGCCTAGCAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCTCACGCCACCGCCACTCTTAGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGTCCTCTCTTCCACATCCTTCATTTCTCCCCGTTTCTCACTATCCTCTCTCTAATCAGAGTTCTCCCACCAGGGGATCTTGGTCTCCGTCGACAAAGAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGAGCTCTCCCTCCCTCGCAACTTCCTTCTCCGCCCTTGGAGCCTCGGTATTTGCCCTACTACTTCCCCATTCTCTTTTTGCTGCTGCATTTTGAGTTGGTTTCTCTCACTCTCTTTGTTTGTTTTTGTTCAGGGATGTACGTGATGGTTGTTGGCGCTTTTCTCTTCCGGACGAATGAACCGCCCTTTATTTCGGTGAGATTGAGATTTCATCCTTTCTTCCTTTTCTTCCTTATTAATGACTCTCTTGTGCTTGACATGTAGAGAAGAATTGAATTGTTTTTCCCCTGAACTTTTGTTTTCTTTTAAAGAGAAAATTAGGTGAAGAAACTTCTAAGACATCCTTGGTTGAAGATCATTGGTTTTCATCTATTGAGTTTTTTAAAAATACCTTTGGATGGGCATTTTCAAGGCCAGGGATTTCTTTATTCTCATTTCTCTATTACTTACATAGTTACATTTATGCAATATCCATTCAAAAGGACAAAGAAAATCCTTTGGGTTGATCATGTTCGAGCTTTCTTTTGAATCTTCGATTTGAATGCGAAGAGTGGTCTATGTTTCCTAACGAATTAAAATGTTCTGGAATGCGTAGTAAAAGATTCAAGTTTAGTTTTTGGATGATTGAACTGCATTTTCTTGAGACACTGGAATATTGATGGTTCCACTACTTGCCACAAATTTATCGAATCGGTTATTATTAAGATGTATGCATCCCTTTGAAGATTACAGCCTAACTTCTCATATTACGTGTTGGAAATTTTGTTCAGTATCAGTGAATTTCATTCAATCTATGAAATTTTTGTTGCCTTCTTAAAAGAATATATTCTCCGTAGTGCCATTTTTCGTGCTCTTTTTCTATTTTTATGAGTTTTGCCGATAAGCCAGCTGCCATAGAAGCATGTTGGTGGATTATTCGGTACTTTTCTTTTTCTTTTTTTTCATGGGGGGGGGAGCGGATTAGAAACAATTTCATTGATTGAATGAAAGATCTAATCCATGAAATTTCCAAGAGATACAAAATGAACCCATTTAATTGCAGGGTAGACAAGTTTTCTCCAATTTGCAAGGAAATTTAAACGGTCAATCTGTATCTGTATGCACTGTAGATTTTCATACCAAAATAGAGCATGGCAAACAACTAATTCAAGGACATCCTCAGAATATCTTTTTTTGACTTGAAAAGTTTTGTCGTCTCTCACATCCCAAAACTCCATAAAACCGCGCTTATCATACTTGACCATATTTGAGCCTTAGTAGCTTTGAAATGGTGATCTGTGAGAAACATGTTGATCCAATCAAGAGAGGCCAAAGAATCGTTCAGTATTTGCAGGTTTTTCTTTTAGTATTCAATAATATTGCTATTTCAATCTTAGAGATGGTTGACTCCACTTAATTTAAAGCAAGTTTAATCATATCAATTTCAGCATTTTATCTGTCTTTACCTCCTTTCTATTCATTTTTAAATACCACATCTTCATTTGCTGATATTCAACTTGTAGCTGTGAATCTGTGATGTTTTGTTTCATCAGCATTTTGTTTCCATATCCAATATTTAGGAGGAAAGATAGTGTTCATAACTAAATTACTTAATAGCATGGAGTTTTGGTTTGATATCTACCATCAACAAGTAGTTAATTCTACAATTTTATGTTTGTATTAGGTCCACAAGATTGTTGATCTTTCAAAGTCTCCTAATCGAGAGGCAATGTGGTATCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAGTTTTTGTAACTTGTTTTGTCGACCTAAAAGGTGTTGATTATTTTATTTTCATGTTAATCCTGCTATGAAAAATGCATCAATTTCTTGTAATCCTACAAATGGGTTATGATGGTCTTTCGATCTTGTAAGATCACAACTCAAGTAGAGAATCCGAGTATTATCCTCTCCTTTGGTAGGCATAATTTTGAAAACACAAGTAGATAAGGATAAGCAGATAGGAAAGCCAATCCTCTTGCTTTGTGTATCTGATGATGTCAAAGAGAATTTTGTGATATACGTACACCATAGTAATTGGGGTTAATTCTCGGTTTAATGTTTTAGTTTCTTGTCAGTAGTTTTAAGTACTTGGTCAGT

mRNA sequence

CTTGGACAAATTAAATGTACTGCTAGGAGTGAATAATAAAATTTTGCAAATATTTGGATTACATTTGCTGTATATTTGAAAAACAGCCATTTATATAAAGAAGCTTTTTAAATTTAGAGCAATTTTGGAAGCAGCCGGACATGGACTACAGCCTAGCAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCTCACGCCACCGCCACTCTTAGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATCTTGGTCTCCGTCGACAAAGAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGAGCTCTCCCTCCCTCGCAACTTCCTTCTCCGCCCTTGGAGCCTCGGGATGTACGTGATGGTTGTTGGCGCTTTTCTCTTCCGGACGAATGAACCGCCCTTTATTTCGGTCCACAAGATTGTTGATCTTTCAAAGTCTCCTAATCGAGAGGCAATGTGGTATCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAGTTTTTGTAACTTGTTTTGTCGACCTAAAAGGTGTTGATTATTTTATTTTCATGTTAATCCTGCTATGAAAAATGCATCAATTTCTTGTAATCCTACAAATGGGTTATGATGGTCTTTCGATCTTGTAAGATCACAACTCAAGTAGAGAATCCGAGTATTATCCTCTCCTTTGGTAGGCATAATTTTGAAAACACAAGTAGATAAGGATAAGCAGATAGGAAAGCCAATCCTCTTGCTTTGTGTATCTGATGATGTCAAAGAGAATTTTGTGATATACGTACACCATAGTAATTGGGGTTAATTCTCGGTTTAATGTTTTAGTTTCTTGTCAGTAGTTTTAAGTACTTGGTCAGT

Coding sequence (CDS)

ATGGACTACAGCCTAGCAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCTCACGCCACCGCCACTCTTAGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATCTTGGTCTCCGTCGACAAAGAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGAGCTCTCCCTCCCTCGCAACTTCCTTCTCCGCCCTTGGAGCCTCGGGATGTACGTGATGGTTGTTGGCGCTTTTCTCTTCCGGACGAATGAACCGCCCTTTATTTCGGTCCACAAGATTGTTGATCTTTCAAAGTCTCCTAATCGAGAGGCAATGTGGTATCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAGTTTTTGTAA

Protein sequence

MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTGTVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEFL

Homology

[Close]

BLAST of Pay0006634 vs. ExPASy Swiss-Prot
Match: Q96E14 (RecQ-mediated genome instability protein 2 OS=Homo sapiens OX=9606 GN=RMI2 PE=1 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 6.2e-06
Identity = 44/124 (35.48%), Postives = 62/124 (50.00%), Query Frame = 0


Query: 8   LKLLCRQL-KDARGTP-----SHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTGT 67
           LK+L  QL +DA G P     S A A    +     W+QG +V  D+   +L    G  +
Sbjct: 23  LKVLAEQLRRDAEGGPGAWRLSRAAAGRGPLDLAAVWMQGRVVMADRGEARLRDPSGDFS 82

Query: 68  VELSLPRNFLLRPWSL-GMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 125
           V   L R    RP  + G YVMV+G     + EP   +V K+ DLS +P  E+MW LEV 
Sbjct: 83  VR-GLERVPRGRPCLVPGKYVMVMGVVQACSPEPCLQAV-KMTDLSDNPIHESMWELEVE 142

[Close]

BLAST of Pay0006634 vs. ExPASy Swiss-Prot
Match: Q5ZM20 (RecQ-mediated genome instability protein 2 OS=Gallus gallus OX=9031 GN=RMI2 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.4e-05
Identity = 45/132 (34.09%), Postives = 67/132 (50.76%), Query Frame = 0


Query: 8   LKLLCRQLKDARGTPSHATATLS-------GILFQRAWLQGILVSVDK-ENGKLILDDGT 67
           LK+L  QL+ A G  +  T  LS        +  +  W+QG ++ V++   G   L DG+
Sbjct: 10  LKVLAAQLR-AAGRGAGGTWRLSRTETGRAPLCLRAVWMQGTVLQVERGGGGSARLRDGS 69

Query: 68  GTVEL----SLPRNFLLRP-WSLGMYVMVVGAFLFRTNEP-PFISVHKIVDLSKSPNREA 126
           G   +     +PR    RP  S G YVMV+G  + R   P P +   K+ DLS++P  E 
Sbjct: 70  GHFTVLGVEDVPRG---RPCLSAGKYVMVMG--MVRACSPEPVLRAIKMTDLSENPVHEE 129

[Close]

BLAST of Pay0006634 vs. ExPASy Swiss-Prot
Match: A5PJU7 (RecQ-mediated genome instability protein 2 OS=Bos taurus OX=9913 GN=RMI2 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 8.9e-05
Identity = 42/128 (32.81%), Postives = 64/128 (50.00%), Query Frame = 0


Query: 8   LKLLCRQL-KDARGTP-----SHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTGT 67
           +K+L  QL +DA G P     S A      +  +  W+QG +  V+   G   L D +G+
Sbjct: 24  IKVLAEQLRRDAEGGPGSWRLSRAAVGREPLELRAVWMQGTV--VEAGGGVARLRDPSGS 83

Query: 68  VEL-SLPRNFLLRPWSL-GMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEV 127
             +  L R    RP  + G YVMV+G     + EP   +V K+ DLS +P  E++W LEV
Sbjct: 84  FSVRGLERVPRGRPCLVPGKYVMVMGVIQACSPEPCLQAV-KMTDLSDNPLHESLWELEV 143

[Close]

BLAST of Pay0006634 vs. ExPASy TrEMBL
Match: A0A5A7UD07 (RecQ-mediated genome instability protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00780 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.8e-70
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
           TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFL 136
           EAYKMFYEPLVEEFL
Sbjct: 121 EAYKMFYEPLVEEFL 135

[Close]

BLAST of Pay0006634 vs. ExPASy TrEMBL
Match: A0A1S3CGI5 (recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC103500657 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.8e-70
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
           TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFL 136
           EAYKMFYEPLVEEFL
Sbjct: 121 EAYKMFYEPLVEEFL 135

[Close]

BLAST of Pay0006634 vs. ExPASy TrEMBL
Match: A0A0A0LVL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G137780 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.6e-63
Identity = 123/135 (91.11%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSL ALKLLCRQLKDARGTPSH TA L GILFQRAWLQGILVSVDKENGKLILDD TG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
           TVELSL R+FLLRPWSLGMYVMVVGAFLFRTNE PFI VHKI+DLSKSPNREAMWYLEVM
Sbjct: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFL 136
           EAYK+FYEPLVE+FL
Sbjct: 121 EAYKLFYEPLVEDFL 135

[Close]

BLAST of Pay0006634 vs. ExPASy TrEMBL
Match: A0A6J1DF83 (recQ-mediated genome instability protein 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020510 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.4e-55
Identity = 109/135 (80.74%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSLAALK+LC QL  AR TPS   ATL GILFQRAWLQGILVSVDK N +L+LDDGTG
Sbjct: 1   MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
           TVELSL R+F LRPW+LGMYVMVVGAF+ R NEPP I VHKIVDLS+ P+REAMWYLEVM
Sbjct: 61  TVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVHKIVDLSEFPSREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFL 136
           EAYKMFYEPL+EEFL
Sbjct: 121 EAYKMFYEPLIEEFL 135

[Close]

BLAST of Pay0006634 vs. ExPASy TrEMBL
Match: A0A6J1I0C8 (uncharacterized protein LOC111469342 OS=Cucurbita maxima OX=3661 GN=LOC111469342 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.5e-55
Identity = 110/134 (82.09%), Postives = 118/134 (88.06%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDY+LAALKLLCRQL DAR  PS+  ATL GILFQRAWLQGILV VD++NGKLILDDGTG
Sbjct: 1   MDYNLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
           TVELSL  +F  RPWSLGMYVMVVGA++ RTNEP  I+VHKIVDLSK P REAMWYLEVM
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSKFPGREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEF 135
           EAYKMFYEPLVEEF
Sbjct: 121 EAYKMFYEPLVEEF 134

[Close]

BLAST of Pay0006634 vs. NCBI nr
Match: XP_008462275.1 (PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo] >KAA0052096.1 recQ-mediated genome instability protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 274.2 bits (700), Expect = 5.8e-70
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
           TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFL 136
           EAYKMFYEPLVEEFL
Sbjct: 121 EAYKMFYEPLVEEFL 135

[Close]

BLAST of Pay0006634 vs. NCBI nr
Match: XP_004139456.1 (recQ-mediated genome instability protein 2 isoform X2 [Cucumis sativus] >KGN64872.1 hypothetical protein Csa_022713 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 5.3e-63
Identity = 123/135 (91.11%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSL ALKLLCRQLKDARGTPSH TA L GILFQRAWLQGILVSVDKENGKLILDD TG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
           TVELSL R+FLLRPWSLGMYVMVVGAFLFRTNE PFI VHKI+DLSKSPNREAMWYLEVM
Sbjct: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFL 136
           EAYK+FYEPLVE+FL
Sbjct: 121 EAYKLFYEPLVEDFL 135

[Close]

BLAST of Pay0006634 vs. NCBI nr
Match: XP_031736186.1 (recQ-mediated genome instability protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 2.3e-58
Identity = 123/164 (75.00%), Postives = 127/164 (77.44%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSL ALKLLCRQLKDARGTPSH TA L GILFQRAWLQGILVSVDKENGKLILDD TG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLPRNFLLRPWSL-----------------------------GMYVMVVGAFLFRT 120
           TVELSL R+FLLRPWSL                             GMYVMVVGAFLFRT
Sbjct: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFFCFCSGMYVMVVGAFLFRT 120

Query: 121 NEPPFISVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEFL 136
           NE PFI VHKI+DLSKSPNREAMWYLEVMEAYK+FYEPLVE+FL
Sbjct: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 164

[Close]

BLAST of Pay0006634 vs. NCBI nr
Match: XP_038894076.1 (uncharacterized protein LOC120082820 [Benincasa hispida])

HSP 1 Score: 232.6 bits (592), Expect = 1.9e-57
Identity = 114/134 (85.07%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSLAALKLLCRQLKDAR +P++  ATL GILFQRAWLQG LVSVDKEN KLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARQSPTNNAATLGGILFQRAWLQGNLVSVDKENAKLILDDGTG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
           TVELSL R+F LRPW LGMYVMVVGAF+FRTNEPP I+VHKIVDLSK P+REAMWYLEV+
Sbjct: 61  TVELSLSRDFRLRPWILGMYVMVVGAFVFRTNEPPVIAVHKIVDLSKFPDREAMWYLEVV 120

Query: 121 EAYKMFYEPLVEEF 135
           EAYKMFYEPL+EEF
Sbjct: 121 EAYKMFYEPLIEEF 134

[Close]

BLAST of Pay0006634 vs. NCBI nr
Match: XP_022152884.1 (recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia] >XP_022152885.1 recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia])

HSP 1 Score: 223.8 bits (569), Expect = 9.0e-55
Identity = 109/135 (80.74%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSLAALK+LC QL  AR TPS   ATL GILFQRAWLQGILVSVDK N +L+LDDGTG
Sbjct: 1   MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
           TVELSL R+F LRPW+LGMYVMVVGAF+ R NEPP I VHKIVDLS+ P+REAMWYLEVM
Sbjct: 61  TVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVHKIVDLSEFPSREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFL 136
           EAYKMFYEPL+EEFL
Sbjct: 121 EAYKMFYEPLIEEFL 135

[Close]

BLAST of Pay0006634 vs. TAIR 10
Match: AT1G08390.1 (unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-45
Identity = 85/136 (62.50%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGK--LILDDG 60
           MDYSLAA+K+LC QL+DA+ TPS   A+L G+LFQRAWLQG+LV      G   L+LDDG
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQNAASLGGVLFQRAWLQGVLVPFSGGGGDNCLVLDDG 60

Query: 61  TGTVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLE 120
           TG +EL L  +F LR W  GMYVMVVG +  RT + P + VHK+VDLS SP+REAMWYLE
Sbjct: 61  TGLLELGLTNDFALRQWKSGMYVMVVGVYQVRTGQIPLLKVHKMVDLSVSPDREAMWYLE 120

Query: 121 VMEAYKMFYEPLVEEF 135
           VM+AY++FYEPL++EF
Sbjct: 121 VMDAYRLFYEPLIQEF 136

The following BLAST results are available for this feature:

BLAST of Pay0006634 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96E14	6.2e-06	35.48	RecQ-mediated genome instability protein 2 OS=Homo sapiens OX=9606 GN=RMI2 PE=1 ...	[more]
Q5ZM20	1.4e-05	34.09	RecQ-mediated genome instability protein 2 OS=Gallus gallus OX=9031 GN=RMI2 PE=2...	[more]
A5PJU7	8.9e-05	32.81	RecQ-mediated genome instability protein 2 OS=Bos taurus OX=9913 GN=RMI2 PE=2 SV...	[more]

BLAST of Pay0006634 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UD07	2.8e-70	100.00	RecQ-mediated genome instability protein 2 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3CGI5	2.8e-70	100.00	recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC1035006...	[more]
A0A0A0LVL5	2.6e-63	91.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G137780 PE=4 SV=1	[more]
A0A6J1DF83	4.4e-55	80.74	recQ-mediated genome instability protein 2 isoform X1 OS=Momordica charantia OX=...	[more]
A0A6J1I0C8	7.5e-55	82.09	uncharacterized protein LOC111469342 OS=Cucurbita maxima OX=3661 GN=LOC111469342...	[more]

BLAST of Pay0006634 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462275.1	5.8e-70	100.00	PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo] >KAA0052096...	[more]
XP_004139456.1	5.3e-63	91.11	recQ-mediated genome instability protein 2 isoform X2 [Cucumis sativus] >KGN6487...	[more]
XP_031736186.1	2.3e-58	75.00	recQ-mediated genome instability protein 2 isoform X1 [Cucumis sativus]	[more]
XP_038894076.1	1.9e-57	85.07	uncharacterized protein LOC120082820 [Benincasa hispida]	[more]
XP_022152884.1	9.0e-55	80.74	recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia] >XP_...	[more]

BLAST of Pay0006634 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08390.1	2.4e-45	62.50	unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 4..126 e-value: 1.2E-32 score: 114.3
IPR032245	RecQ-mediated genome instability protein 2	PFAM	PF16100	RMI2	coord: 6..123 e-value: 1.0E-33 score: 116.0
IPR032245	RecQ-mediated genome instability protein 2	PANTHER	PTHR33962	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 2 RMI2	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0006634.1	Pay0006634.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006629	lipid metabolic process
biological_process	GO:0043007	maintenance of rDNA
biological_process	GO:2000042	negative regulation of double-strand break repair via homologous recombination
biological_process	GO:0009555	pollen development
biological_process	GO:0033045	regulation of sister chromatid segregation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0008374	O-acyltransferase activity