Pay0006398 (gene) Melon (Payzawat) v1

Overview


Name	Pay0006398
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Succinate dehydrogenase subunit 3
Location	chr07: 1353682 .. 1353984 (+)
RNA-Seq Expression	Pay0006398
Synteny	Pay0006398

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATCCTTCGCCCGTTATCTCCTCATCTTCCTATTTATAAGGCACAGCTGACTTCGACGTTTCCAATTTCCCATAGAATCTCCGGGGCTTTCCTAGCAACTCTCGTTTTGTTTTTTTATCTTCTTTGTCTGAAAATGGGTTTGATTTGCTTCACCTATGAACATTTCTACGGATTCTTCTTTTATTCAGCAAAGCTCATCCTAATATCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGGGTTCGTCATTTATTTCATGATTTTGCTTTCGGAAGAGAGATCTGA

mRNA sequence

ATGAATATCCTTCGCCCGTTATCTCCTCATCTTCCTATTTATAAGGCACAGCTGACTTCGACGTTTCCAATTTCCCATAGAATCTCCGGGGCTTTCCTAGCAACTCTCGTTTTGTTTTTTTATCTTCTTTGTCTGAAAATGGGTTTGATTTGCTTCACCTATGAACATTTCTACGGATTCTTCTTTTATTCAGCAAAGCTCATCCTAATATCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGGGTTCGTCATTTATTTCATGATTTTGCTTTCGGAAGAGAGATCTGA

Coding sequence (CDS)

ATGAATATCCTTCGCCCGTTATCTCCTCATCTTCCTATTTATAAGGCACAGCTGACTTCGACGTTTCCAATTTCCCATAGAATCTCCGGGGCTTTCCTAGCAACTCTCGTTTTGTTTTTTTATCTTCTTTGTCTGAAAATGGGTTTGATTTGCTTCACCTATGAACATTTCTACGGATTCTTCTTTTATTCAGCAAAGCTCATCCTAATATCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGGGTTCGTCATTTATTTCATGATTTTGCTTTCGGAAGAGAGATCTGA

Protein sequence

MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGFFFYSAKLILISVEITALALSYHLYNGVRHLFHDFAFGREI

Homology

[Close]

BLAST of Pay0006398 vs. ExPASy Swiss-Prot
Match: P35721 (Succinate dehydrogenase cytochrome b560 subunit OS=Marchantia polymorpha OX=3197 GN=SDH3 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-19
Identity = 59/104 (56.73%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 1   MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF 60
           M I RPLSPHL IYK QLTSTF I HRISGAFLAT+VL F +L  K+G +  T+ HFY +
Sbjct: 1   MKINRPLSPHLTIYKPQLTSTFSIFHRISGAFLATMVL-FSILFFKIGDLSLTFYHFYQY 60

Query: 61  F----FYSAKLILISVEITALALSYHLYNGVRHLFHDFAFGREI 101
           F    FY    I+  V  T LAL YH+ NGVRHL  D  F  E+
Sbjct: 61  FFFLTFYLNWFIISLVNFTLLALCYHMSNGVRHLLWDLGFFLEL 103

[Close]

BLAST of Pay0006398 vs. ExPASy Swiss-Prot
Match: P0DKI0 (Succinate dehydrogenase subunit 3-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH3-1 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.2e-11
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 5   RPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGFFFYS 64
           RPLSPHL +Y+ Q+ S   I +RISG +L  +    YLL LKMG+IC TY  FY   +++
Sbjct: 125 RPLSPHLSVYQPQMNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHT 184

Query: 65  AKLILISVEITALALSYHLYNGVRHL 91
            + + +   +TALA  YH       L
Sbjct: 185 QQQLPVITSVTALAAIYHTIKSTHSL 210

[Close]

BLAST of Pay0006398 vs. ExPASy Swiss-Prot
Match: P0DKI1 (Succinate dehydrogenase subunit 3-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH3-2 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.2e-11
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 5   RPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGFFFYS 64
           RPLSPHL +Y+ Q+ S   I +RISG +L  +    YLL LKMG+IC TY  FY   +++
Sbjct: 125 RPLSPHLSVYQPQMNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHT 184

Query: 65  AKLILISVEITALALSYHLYNGVRHL 91
            + + +   +TALA  YH       L
Sbjct: 185 QQQLPVITSVTALAAIYHTIKSTHSL 210

[Close]

BLAST of Pay0006398 vs. ExPASy Swiss-Prot
Match: P80481 (Succinate dehydrogenase cytochrome b560 subunit OS=Reclinomonas americana OX=48483 GN=SDH3 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-10
Identity = 46/110 (41.82%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 1   MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKM----------GLI 60
           MNI RP+SPHL IYK Q+T+T  I HRI+G  LA L L F++L LKM            I
Sbjct: 17  MNINRPISPHLTIYKLQITNTLSIFHRITGGVLA-LTLCFFILILKMLNFHLSSYAFYSI 76

Query: 61  CFTYEHFYGFFFYSAKLILISVEITALALSYHLYNGVRHLFHDFAFGREI 101
            +T   + GF F +    L+      L + YHL+ G+RHL  D  +  EI
Sbjct: 77  AYTLNQYSGFLFIAISFFLL------LFIFYHLFAGLRHLVWDAGYALEI 119

[Close]

BLAST of Pay0006398 vs. ExPASy Swiss-Prot
Match: Q4UKC1 (Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=sdhC PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-08
Identity = 40/96 (41.67%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 5   RPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGFFFYS 64
           RP SPHL IYK Q++ST  I HR++G     + LFF +  L   LI   Y++ Y   F +
Sbjct: 12  RPTSPHLSIYKLQISSTLSILHRMTG-----VALFFAVSILAWWLILSKYDNNY-LQFAN 71

Query: 65  AKLILISVEITALALSYHLYNGVRHLFHDFAFGREI 101
             +I I +   + A  YHL NG+RHLF D  +G  I
Sbjct: 72  CCIIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSI 101

[Close]

BLAST of Pay0006398 vs. ExPASy TrEMBL
Match: G3EU19 (Succinate dehydrogenase subunit 3 OS=Cucumis melo subsp. melo OX=412675 GN=sdh3 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF 60
           MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF
Sbjct: 1   MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF 60

Query: 61  FFYSAKLILISVEITALALSYHLYNGVRHLFHDFAFGREI 101
           FFYSAKLILISVEITALALSYHLYNGVRHLFHDFAFGREI
Sbjct: 61  FFYSAKLILISVEITALALSYHLYNGVRHLFHDFAFGREI 100

[Close]

BLAST of Pay0006398 vs. ExPASy TrEMBL
Match: A0A3Q9CX18 (Succinate dehydrogenase subunit 3 OS=Cucumis melo var. momordica OX=2034244 GN=sdh3 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF 60
           MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF
Sbjct: 1   MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF 60

Query: 61  FFYSAKLILISVEITALALSYHLYNGVRHLFHDFAFGREI 101
           FFYSAKLILISVEITALALSYHLYNGVRHLFHDFAFGREI
Sbjct: 61  FFYSAKLILISVEITALALSYHLYNGVRHLFHDFAFGREI 100

[Close]

BLAST of Pay0006398 vs. ExPASy TrEMBL
Match: G3EIY8 (Succinate dehydrogenase subunit 3 OS=Cucumis sativus OX=3659 GN=sdh3 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.3e-43
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF 60
          MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLV FFYLLCLKMGLICFTY +FYGF
Sbjct: 1  MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVFFFYLLCLKMGLICFTYSNFYGF 60

Query: 61 FFYSAKLILISVEITALALSYHLYNGVRHLFHDFAF 97
          FFYSAKLILISVEITALALSYHLYNGVRHLFHDF+F
Sbjct: 61 FFYSAKLILISVEITALALSYHLYNGVRHLFHDFSF 96

[Close]

BLAST of Pay0006398 vs. ExPASy TrEMBL
Match: A0A7D6CA10 (Succinate dehydrogenase subunit 3 OS=Luffa acutangula OX=56866 GN=sdh3 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.3e-43
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF 60
           MNILRPLSPHLPIYK QLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYE+FY F
Sbjct: 1   MNILRPLSPHLPIYKPQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYENFYRF 60

Query: 61  FFYSAKLILISVEITALALSYHLYNGVRHLFHDFAFGREI 101
           FFYS+KLILISVEITALALSYHLYNGVRHL  DF+FGREI
Sbjct: 61  FFYSSKLILISVEITALALSYHLYNGVRHLLTDFSFGREI 100

[Close]

BLAST of Pay0006398 vs. ExPASy TrEMBL
Match: A0A5C2FYC4 (Succinate dehydrogenase subunit 3 OS=Spondias mombin OX=80338 GN=sdh3 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.5e-39
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF 60
          MN LRPLSPHLPIYK QLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYE+FY F
Sbjct: 1  MNSLRPLSPHLPIYKPQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYENFYQF 60

Query: 61 FFYSAKLILISVEITALALSYHLYNGVRHLFHDFA 96
          FFYS+KLILISVEITALALSYHLYNGVRHL  DF+
Sbjct: 61 FFYSSKLILISVEITALALSYHLYNGVRHLLTDFS 95

[Close]

BLAST of Pay0006398 vs. NCBI nr
Match: AEN56102.1 (succinate dehydrogenase subunit 3 [Cucumis melo subsp. melo] >AZP40286.1 succinate dehydrogenase subunit 3 [Cucumis melo var. momordica])

HSP 1 Score: 198.7 bits (504), Expect = 2.3e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF 60
           MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF
Sbjct: 1   MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF 60

Query: 61  FFYSAKLILISVEITALALSYHLYNGVRHLFHDFAFGREI 101
           FFYSAKLILISVEITALALSYHLYNGVRHLFHDFAFGREI
Sbjct: 61  FFYSAKLILISVEITALALSYHLYNGVRHLFHDFAFGREI 100

[Close]

BLAST of Pay0006398 vs. NCBI nr
Match: YP_004849336.1 (succinate dehydrogenase subunit 3 [Cucumis sativus] >ADZ10763.1 succinate dehydrogenase subunit 3 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF 60
          MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLV FFYLLCLKMGLICFTY +FYGF
Sbjct: 1  MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVFFFYLLCLKMGLICFTYSNFYGF 60

Query: 61 FFYSAKLILISVEITALALSYHLYNGVRHLFHDFAF 97
          FFYSAKLILISVEITALALSYHLYNGVRHLFHDF+F
Sbjct: 61 FFYSAKLILISVEITALALSYHLYNGVRHLFHDFSF 96

[Close]

BLAST of Pay0006398 vs. NCBI nr
Match: YP_009913618.1 (succinate dehydrogenase subunit 3 [Luffa acutangula] >QLJ93029.1 succinate dehydrogenase subunit 3 [Luffa acutangula])

HSP 1 Score: 182.6 bits (462), Expect = 1.7e-42
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF 60
           MNILRPLSPHLPIYK QLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYE+FY F
Sbjct: 1   MNILRPLSPHLPIYKPQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYENFYRF 60

Query: 61  FFYSAKLILISVEITALALSYHLYNGVRHLFHDFAFGREI 101
           FFYS+KLILISVEITALALSYHLYNGVRHL  DF+FGREI
Sbjct: 61  FFYSSKLILISVEITALALSYHLYNGVRHLLTDFSFGREI 100

[Close]

BLAST of Pay0006398 vs. NCBI nr
Match: YP_009704561.1 (succinate dehydrogenase subunit 3 [Spondias mombin] >YP_009704619.1 succinate dehydrogenase subunit 3 [Spondias tuberosa] >QEP09118.1 succinate dehydrogenase subunit 3 [Spondias mombin] >QEP09150.1 succinate dehydrogenase subunit 3 [Spondias tuberosa])

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-38
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF 60
          MN LRPLSPHLPIYK QLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYE+FY F
Sbjct: 1  MNSLRPLSPHLPIYKPQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYENFYQF 60

Query: 61 FFYSAKLILISVEITALALSYHLYNGVRHLFHDFA 96
          FFYS+KLILISVEITALALSYHLYNGVRHL  DF+
Sbjct: 61 FFYSSKLILISVEITALALSYHLYNGVRHLLTDFS 95

[Close]

BLAST of Pay0006398 vs. NCBI nr
Match: YP_009519741.1 (succinate dehydrogenase subunit 3 [Nepenthes ventricosa x Nepenthes alata] >AYC21372.1 succinate dehydrogenase subunit 3 [Nepenthes ventricosa x Nepenthes alata])

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-38
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGF 60
          MNILRPLSPHLPIYK QLTSTFPISHRISGAFLAT+VLFFYLLCLK+GLICFTYE+FY F
Sbjct: 1  MNILRPLSPHLPIYKPQLTSTFPISHRISGAFLATIVLFFYLLCLKIGLICFTYENFYQF 60

Query: 61 FFYSAKLILISVEITALALSYHLYNGVRHLFHDFA 96
          FFYS+KLILISVEITALALSYHLYNGVRHL  DF+
Sbjct: 61 FFYSSKLILISVEITALALSYHLYNGVRHLLTDFS 95

[Close]

BLAST of Pay0006398 vs. TAIR 10
Match: AT4G32210.1 (succinate dehydrogenase 3-2 )

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-12
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 5   RPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGFFFYS 64
           RPLSPHL +Y+ Q+ S   I +RISG +L  +    YLL LKMG+IC TY  FY   +++
Sbjct: 125 RPLSPHLSVYQPQMNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHT 184

Query: 65  AKLILISVEITALALSYHLYNGVRHL 91
            + + +   +TALA  YH       L
Sbjct: 185 QQQLPVITSVTALAAIYHTIKSTHSL 210

[Close]

BLAST of Pay0006398 vs. TAIR 10
Match: AT5G09600.1 (succinate dehydrogenase 3-1 )

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-12
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 5   RPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGFFFYS 64
           RPLSPHL +Y+ Q+ S   I +RISG +L  +    YLL LKMG+IC TY  FY   +++
Sbjct: 125 RPLSPHLSVYQPQMNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHT 184

Query: 65  AKLILISVEITALALSYHLYNGVRHL 91
            + + +   +TALA  YH       L
Sbjct: 185 QQQLPVITSVTALAAIYHTIKSTHSL 210

[Close]

BLAST of Pay0006398 vs. TAIR 10
Match: AT5G09600.2 (succinate dehydrogenase 3-1 )

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-12
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 5   RPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGFFFYS 64
           RPLSPHL +Y+ Q+ S   I +RISG +L  +    YLL LKMG+IC TY  FY   +++
Sbjct: 98  RPLSPHLSVYQPQMNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHT 157

Query: 65  AKLILISVEITALALSYHLYNGVRHL 91
            + + +   +TALA  YH       L
Sbjct: 158 QQQLPVITSVTALAAIYHTIKSTHSL 183

[Close]

BLAST of Pay0006398 vs. TAIR 10
Match: AT5G09600.3 (succinate dehydrogenase 3-1 )

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-12
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 5   RPLSPHLPIYKAQLTSTFPISHRISGAFLATLVLFFYLLCLKMGLICFTYEHFYGFFFYS 64
           RPLSPHL +Y+ Q+ S   I +RISG +L  +    YLL LKMG+IC TY  FY   +++
Sbjct: 125 RPLSPHLSVYQPQMNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHT 184

Query: 65  AKLILISVEITALALSYHLYNGVRHL 91
            + + +   +TALA  YH       L
Sbjct: 185 QQQLPVITSVTALAAIYHTIKSTHSL 210

The following BLAST results are available for this feature:

BLAST of Pay0006398 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P35721	1.2e-19	56.73	Succinate dehydrogenase cytochrome b560 subunit OS=Marchantia polymorpha OX=3197...	[more]
P0DKI0	6.2e-11	41.86	Succinate dehydrogenase subunit 3-1, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
P0DKI1	6.2e-11	41.86	Succinate dehydrogenase subunit 3-2, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
P80481	1.8e-10	41.82	Succinate dehydrogenase cytochrome b560 subunit OS=Reclinomonas americana OX=484...	[more]
Q4UKC1	2.2e-08	41.67	Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia felis (strain ATCC...	[more]

BLAST of Pay0006398 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
G3EU19	1.1e-47	100.00	Succinate dehydrogenase subunit 3 OS=Cucumis melo subsp. melo OX=412675 GN=sdh3 ...	[more]
A0A3Q9CX18	1.1e-47	100.00	Succinate dehydrogenase subunit 3 OS=Cucumis melo var. momordica OX=2034244 GN=s...	[more]
G3EIY8	6.3e-43	95.83	Succinate dehydrogenase subunit 3 OS=Cucumis sativus OX=3659 GN=sdh3 PE=3 SV=1	[more]
A0A7D6CA10	8.3e-43	93.00	Succinate dehydrogenase subunit 3 OS=Luffa acutangula OX=56866 GN=sdh3 PE=3 SV=1	[more]
A0A5C2FYC4	5.5e-39	91.58	Succinate dehydrogenase subunit 3 OS=Spondias mombin OX=80338 GN=sdh3 PE=3 SV=1	[more]

BLAST of Pay0006398 vs. NCBI nr


Match Name	E-value	Identity	Description
AEN56102.1	2.3e-47	100.00	succinate dehydrogenase subunit 3 [Cucumis melo subsp. melo] >AZP40286.1 succina...	[more]
YP_004849336.1	1.3e-42	95.83	succinate dehydrogenase subunit 3 [Cucumis sativus] >ADZ10763.1 succinate dehydr...	[more]
YP_009913618.1	1.7e-42	93.00	succinate dehydrogenase subunit 3 [Luffa acutangula] >QLJ93029.1 succinate dehyd...	[more]
YP_009704561.1	1.1e-38	91.58	succinate dehydrogenase subunit 3 [Spondias mombin] >YP_009704619.1 succinate de...	[more]
YP_009519741.1	1.1e-38	90.53	succinate dehydrogenase subunit 3 [Nepenthes ventricosa x Nepenthes alata] >AYC2...	[more]

BLAST of Pay0006398 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32210.1	4.4e-12	41.86	succinate dehydrogenase 3-2	[more]
AT5G09600.1	4.4e-12	41.86	succinate dehydrogenase 3-1	[more]
AT5G09600.2	4.4e-12	41.86	succinate dehydrogenase 3-1	[more]
AT5G09600.3	4.4e-12	41.86	succinate dehydrogenase 3-1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034804	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	GENE3D	1.20.1300.10	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	coord: 1..100 e-value: 2.3E-23 score: 84.7
IPR034804	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	SUPERFAMILY	81343	Fumarate reductase respiratory complex transmembrane subunits	coord: 1..99
IPR000701	Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit	PFAM	PF01127	Sdh_cyt	coord: 3..97 e-value: 1.3E-16 score: 60.6
IPR014314	Succinate dehydrogenase, cytochrome b556 subunit	PIRSF	PIRSF000178	SDH_cyt_b560	coord: 1..100 e-value: 4.5E-23 score: 79.1
IPR014314	Succinate dehydrogenase, cytochrome b556 subunit	TIGRFAM	TIGR02970	TIGR02970	coord: 5..99 e-value: 6.1E-18 score: 63.2
None	No IPR available	PIRSR	PIRSR000178-1	PIRSR000178-1	coord: 5..99 e-value: 1.8E-21 score: 73.7
None	No IPR available	PANTHER	PTHR10978	SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT	coord: 3..97
None	No IPR available	PANTHER	PTHR10978:SF5	SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, MITOCHONDRIAL	coord: 3..97
None	No IPR available	CDD	cd03499	SQR_TypeC_SdhC	coord: 5..100 e-value: 3.48633E-18 score: 71.4119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0006398.1	Pay0006398.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0006099	tricarboxylic acid cycle
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045281	succinate dehydrogenase complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000104	succinate dehydrogenase activity
molecular_function	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors