Pay0006390 (gene) Melon (Payzawat) v1

Overview


Name	Pay0006390
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	YqgFc domain-containing protein
Location	chr09: 22365719 .. 22368757 (-)
RNA-Seq Expression	Pay0006390
Synteny	Pay0006390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCGAGCAGTTAATCGAACCGAGGGATCGGAAGGATTCGGGCTTCATCGAGTCTTGTGTCACATTCGATTGCGAATGAGTCTGATTGTGCAGCACCGATTGTACGTTTTGATCCTCAAAGGCGCGAAGCTGATAATGGTTTGTATGAATTAAATAGAAATACAAGATGAAGTATGTGAAGCCGTCGATACTTTTTCGTGATTTGTTGAAGAGAGATGAACTTAAACATAGCCGTTTGCTTGGTTTGGATGTTGGTGATAAGTATGTTGGTTTAGCCGTATCTGACCCAGATAATAAAATCGCTTCCCCTCTTAGGTATTTTGTTCATGATGGGGTTTTGTGTGAGGGATTGGGAGTAATGGGCCTGAAGCTGGAGTTAACCAAACTTGACCAGTGTTAGTTGTTGTCCATTGTTGCAGTGTTTTGTTAAGGAAGAAGAACACAATGGATTTGATGGCTGAGGATTTTCAGAAATTGGTGAGGCCTTTTACTCTGGTTCTTTTTACTTTGTACTTCCTATTAAGATTTGTGGAATGTAATTTGATGCAATGCTGAGTGATAACAATGATTGAAGGTTGGTGCCACAAAATCCTGTAGGAAGAACTTTAATTTACTTGAGATTTTCTTTTCTTTTTCTTTTATCTTTTTTCCGTCGTACGAAGATTTGTTTAAGGTTATTTGATGCTATGCTGAATAAACGATGACTGAAGGGTTGTGCCACAAAAATCTGTAGGGAGTATCTTTTTTTAAAAAAATCTATTTCCTATGAAGATTTGTAGAACGTTATTTGATGAAATGCTGAATGATAAACAATGATTGAAGGGTGAACAAAATTCTGCAGGTAGAACTTTAATTTACTTGAGACTTTCTTCTCTCTTTATATCTATCTATCTATCTATCTATCTCTACACACACACAATCTTTTTCTTTCCTATGAAGATTGGTAGAATGTTGTTTTATGCAATCCTAAATGATAAAGAATGATTTAAGGGTGGTGCAAAAAAAATTCAGGGAGAACTTTTTCGGTGTGTACCACTTTAGGTGTCGAAATGGAATTTATTAACGATGACACCAGGATTGCTTTGTAGTTGCATAGCTTTAACTTTACCTTTTTCCTTAACGCATTTCCTGAGATGTGTTACGCAATGTATTTGCCTTTAAACTTCAATATATGATAATGAATTGTTAATGTTGTTCTTTCGTTCAACATTCAGTCATCTCCATCCTGTTTATATTTACAGCTGTTTCTGGTTTGTGTATTCAGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAAAAACACGGAAGTGCGTTCTTTATCTCTTCAGAAACATCATTATTGACTCTTATCTGTACTTGATATTATATTGTTCTGTTTACAGGCTATCCAAGTGAAAATCTTCATCGATGACCTTTGCAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGGGCTTTACATCAAAGGTTAGTGCATCTAATTTAGCAAGCCCTTCCGGTTTGTCGTGTGACATATGCGGCATGCCTTTCAATGTCTCAGTCCATGTCTCCGTTGAATTCACCAACTTGGTCAAATGAGTGTGATTGTGTTTTGAATTGTCTATGTCACCTGTTAAAATTTTCTTTTACGTGGTGCTGACTTAGGAATAGGCTACTGCTACATTGAATTTCATCAACAATGAATTTTATATTTGTGATATACTGATTTTTTTTATCTATACCCAGAATGTGGAACAAATGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATGCTGGACAAATTTGCTGCTGTTGGAATACTTCAGGTAATTTACAATTCTTTCTCTCTTTTGCTTAAACTTTCATCTTGATAAGGTTGGCAGCTGAAATGATTATCCAATTTTCTCAATGTAAGAATAATATATTAAAATATCAATAGAAGCTTCAGTGTATTAACAATTAGGTAGCGTATGTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGAGCGAGACGTAGAGTAATGTGGACTATATGGGATCAGGTACTTGTTTGTCAACGAAGTTGCTTTCTTTGAAAATTGAAAATTCTAAATTTTGAACTAAAAAATGTCCTTTTGTTCATAAATGTTTACCGTGACTAGAAAAGTGGGTTTTCAACTTGGTTTCTAATGTATAATTGACCATTTAGAAGCAAATTTCATATTTCATGGACTAGTCAGTAACTGCATTTATCCTAGATTGAATATGTCATTTGTATATTTCTAGACCTAAAAGTATTAGTTTTGAAATTCATATACCACTGAAAATTAGTAAAGAGGTTGTTTGGGCCCTCGACTTTGAGTGGGTGAAGCGGTGTTTTATAATCAACTCAATGTTTGTGTTCGAAGAACAATAGTAGTTCTTTTTAAATAAGACTAAAATAATTTGCATTCTAAATATAAACTGTTATAACCTATCGACTAATAATTAACTCAACGTCCCAAACGTTTTAAGTTCAAATATCACAAATGAAAATTTTATTTTATTATCTAGGTCGGTGATATTTGCAATTTCTAAAGGACAGTTTGTGTTAAACTTTGCCTTCAAATTTTAGGCTTCCATCTATTGTTCCCACCATCAAATGATTTAATACATTGATAATTATATGCAGACATCGATGCTCCCTTCTTAGTAGAGGATGGAACATTTTGTTTTGAAGCTCTCGGTTCTGAACTGGCGATGGATAGGCATTGATGAATTGATATTATTGTCAATTTTATCTTTAAAGGGTGAATTATCTGCTCACAGTCGACTAATCAGCTAATGGGGTTCCTTTTATGTAGACTTTTTCCTGGGGGAATTCTATCGAGTGCTTGTTTCCATGTTTGTTTATTTCTAAATTATTGCTAATGACAACAATTGTTCCGTATAGTTTGTCTATATTACAAATCAACCTCTTGTTTTAAAAATGGCTTCAATTGTTTTTATGTTTGTGAATGTGCTGAATGGTTAATTTATTGATCAAT

mRNA sequence

CTTCGAGCAGTTAATCGAACCGAGGGATCGGAAGGATTCGGGCTTCATCGAGTCTTGTGTCACATTCGATTGCGAATGAGTCTGATTGTGCAGCACCGATTGTACGTTTTGATCCTCAAAGGCGCGAAGCTGATAATGGTTTGTATGAATTAAATAGAAATACAAGATGAAGTATGTGAAGCCGTCGATACTTTTTCGTGATTTGTTGAAGAGAGATGAACTTAAACATAGCCGTTTGCTTGGTTTGGATGTTGGTGATAAGTATGTTGGTTTAGCCGTATCTGACCCAGATAATAAAATCGCTTCCCCTCTTAGTGTTTTGTTAAGGAAGAAGAACACAATGGATTTGATGGCTGAGGATTTTCAGAAATTGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAAAAACACGGAAGCTATCCAAGTGAAAATCTTCATCGATGACCTTTGCAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGGGCTTTACATCAAAGAATGTGGAACAAATGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATGCTGGACAAATTTGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGAGCGAGACGTAGAGTAATGTGGACTATATGGGATCAGACATCGATGCTCCCTTCTTAGTAGAGGATGGAACATTTTGTTTTGAAGCTCTCGGTTCTGAACTGGCGATGGATAGGCATTGATGAATTGATATTATTGTCAATTTTATCTTTAAAGGGTGAATTATCTGCTCACAGTCGACTAATCAGCTAATGGGGTTCCTTTTATGTAGACTTTTTCCTGGGGGAATTCTATCGAGTGCTTGTTTCCATGTTTGTTTATTTCTAAATTATTGCTAATGACAACAATTGTTCCGTATAGTTTGTCTATATTACAAATCAACCTCTTGTTTTAAAAATGGCTTCAATTGTTTTTATGTTTGTGAATGTGCTGAATGGTTAATTTATTGATCAAT

Coding sequence (CDS)

ATGAAGTATGTGAAGCCGTCGATACTTTTTCGTGATTTGTTGAAGAGAGATGAACTTAAACATAGCCGTTTGCTTGGTTTGGATGTTGGTGATAAGTATGTTGGTTTAGCCGTATCTGACCCAGATAATAAAATCGCTTCCCCTCTTAGTGTTTTGTTAAGGAAGAAGAACACAATGGATTTGATGGCTGAGGATTTTCAGAAATTGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAAAAACACGGAAGCTATCCAAGTGAAAATCTTCATCGATGACCTTTGCAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGGGCTTTACATCAAAGAATGTGGAACAAATGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATGCTGGACAAATTTGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGAGCGAGACGTAG

Protein sequence

MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET

Homology

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BLAST of Pay0006390 vs. ExPASy Swiss-Prot
Match: A4XKC6 (Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=Csac_1776 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.2e-16
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 0


Query: 23  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAED----FQKLISEFSLAGF 82
           R+L LD+G + +G+A+SDP    A P  VL       DL  ED      K+ +E  +   
Sbjct: 2   RILCLDIGSRRIGVAISDPLKIAAQPFCVL-------DLQKEDLYSCLDKIFNEHQIEKI 61

Query: 83  IVGYPFDRLR--KNTEAIQVKIFIDDLC-KTGKLEGVKYTFWDEGFTSKNVEQMIKPLNL 142
           ++GYP  +    K TE +Q    ID++C +  +   V    WDE F++K VE++++  N+
Sbjct: 62  VIGYPVSKFHPDKATEKLQK---IDEICSELERRYKVGIIKWDERFSTKAVERILREENV 121

Query: 143 LPAVSKTMLDKFAAVGILQGYLDYFN 162
                K ++DK AAV ILQGYLD+ N
Sbjct: 122 SWQKRKKVVDKLAAVYILQGYLDFIN 137

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BLAST of Pay0006390 vs. ExPASy Swiss-Prot
Match: B9MRK7 (Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) OX=521460 GN=Athe_1211 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15
Identity = 49/140 (35.00%), Postives = 81/140 (57.86%), Query Frame = 0


Query: 23  RLLGLDVGDKYVGLAVSDPDNKIASP-LSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVG 82
           R+L LD+G+  VG+A+SDP    A P +++ LR K+    + E+  K+   +++   ++G
Sbjct: 2   RILCLDIGNSRVGVAISDPLKITAQPVMTIELRNKD----LFEELDKIFQGYNIEKVVIG 61

Query: 83  YPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSK 142
           YP  +L  + +  ++K   +   K G    V+   WDE F++K VE++I    L     K
Sbjct: 62  YPLSKLHPDQKDEKLKKIDEISEKIGSRYNVEIVKWDERFSTKAVERVIDE-ELNWKRKK 121

Query: 143 TMLDKFAAVGILQGYLDYFN 162
            ++DK AAV ILQGYLD++N
Sbjct: 122 KIIDKVAAVYILQGYLDFYN 136

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BLAST of Pay0006390 vs. ExPASy Swiss-Prot
Match: C4Z578 (Putative pre-16S rRNA nuclease OS=Lachnospira eligens (strain ATCC 27750 / DSM 3376 / VPI C15-48 / C15-B4) OX=515620 GN=EUBELI_00774 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.5e-14
Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = 0


Query: 23  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNT-MDLMAEDFQKLISEFSLAGFIVG 82
           R++GLDVG K VG+A+SDP    A P   + RK+N  +       +++ISE+ +   +VG
Sbjct: 2   RIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVG 61

Query: 83  YPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSK 142
           YP  +   +T   + K   +      +  G+  T WDE  T+   +++++   +     K
Sbjct: 62  YP--KNMDDTIGERAKACEEFAAALERRTGLPVTLWDERLTTVEADEVLEECGMRRENRK 121

Query: 143 TMLDKFAAVGILQGYLD 159
           T++D+ AAV IL+GY++
Sbjct: 122 TVIDQLAAVFILRGYME 136

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BLAST of Pay0006390 vs. ExPASy Swiss-Prot
Match: B6IN25 (Putative pre-16S rRNA nuclease OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=RC1_1518 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-13
Identity = 50/148 (33.78%), Postives = 79/148 (53.38%), Query Frame = 0


Query: 14  LKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEF 73
           LK    ++ RL+GLD+G+K +GLAVSDP   +ASP+  + R K T D  A++  + + + 
Sbjct: 9   LKASLPRNGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQD--AQELARAMRDR 68

Query: 74  SLAGFIVGYPFDRLRKNTEAIQ-VKIFIDDLCKTGKLEGV--KYTFWDEGFTSKNVEQMI 133
            +   +VG P +         Q V+ F   L +  +L G   +  FWDE  ++  VE+M+
Sbjct: 69  DVRALVVGLPVNMDGTEGPRCQSVREFSRLLLQRPQLFGFEPEIAFWDERLSTSAVERMM 128

Query: 134 KPLNLLPAVSKTMLDKFAAVGILQGYLD 159
              ++       ++DK AA  ILQG LD
Sbjct: 129 IGWDMTRKRRDEVVDKMAAAYILQGALD 154

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BLAST of Pay0006390 vs. ExPASy Swiss-Prot
Match: Q3AEN4 (Putative pre-16S rRNA nuclease OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=CHY_0542 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-13
Identity = 45/137 (32.85%), Postives = 73/137 (53.28%), Query Frame = 0


Query: 23  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGY 82
           ++LGLDVGDK +G+A+SD     A  L+V+ R     DL  E+ +K+I    +   ++GY
Sbjct: 2   KVLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDL--EEIKKIIDLHHVTEVVIGY 61

Query: 83  PFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKT 142
           P  R    T   + ++      +  K  G+K  FWDE  ++   E+++   ++     K 
Sbjct: 62  P--RNMNGTAGPRAELVKRFARELYKFTGIKPVFWDERLSTVEAEKLLISGDISRRKRKK 121

Query: 143 MLDKFAAVGILQGYLDY 160
           ++DK AA  IL GYL+Y
Sbjct: 122 VIDKLAATLILSGYLNY 134

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BLAST of Pay0006390 vs. ExPASy TrEMBL
Match: A0A1S3ATQ4 (putative pre-16S rRNA nuclease isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482742 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.8e-90
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60
           MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD
Sbjct: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60

Query: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120
           LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG
Sbjct: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120

Query: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET 170
           FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET
Sbjct: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET 169

[Close]

BLAST of Pay0006390 vs. ExPASy TrEMBL
Match: A0A1S3ATK5 (putative pre-16S rRNA nuclease isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482742 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60
           MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD
Sbjct: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60

Query: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120
           LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG
Sbjct: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120

Query: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ 155
           FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ
Sbjct: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ 154

[Close]

BLAST of Pay0006390 vs. ExPASy TrEMBL
Match: A0A5A7THE9 (Putative pre-16S rRNA nuclease isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002640 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.9e-80
Identity = 153/156 (98.08%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60
           MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD
Sbjct: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60

Query: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120
           LMA+DFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG
Sbjct: 61  LMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120

Query: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGY 157
           FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ +
Sbjct: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQTF 156

[Close]

BLAST of Pay0006390 vs. ExPASy TrEMBL
Match: A0A0A0KMK7 (YqgFc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G153680 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.1e-79
Identity = 148/169 (87.57%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60
           MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMD
Sbjct: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60

Query: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120
           LMA+DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFIDDLCKTGKLEGVKYTFWDE 
Sbjct: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET 170
           FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Sbjct: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 169

[Close]

BLAST of Pay0006390 vs. ExPASy TrEMBL
Match: A0A6J1K3L4 (uncharacterized protein LOC111490857 OS=Cucurbita maxima OX=3661 GN=LOC111490857 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.8e-69
Identity = 133/168 (79.17%), Postives = 146/168 (86.90%), Query Frame = 0


Query: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60
           MKYV+P  LFRDLLK + L+  R LGLDVGDKYVGLAVSDPDNKIASPLSVL RKK  M 
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120
           LMA DFQ+LISE SL+GFIVGYPFD  R+N +A+QVKIFIDDLCKTGKLEGVKYTFWDE 
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSE 169
           FTSKNVE +IKPL L P +SKT++DKFAAVGILQGYLD+FNRRPEL E
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE 168

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BLAST of Pay0006390 vs. NCBI nr
Match: XP_008437257.1 (PREDICTED: putative pre-16S rRNA nuclease isoform X1 [Cucumis melo])

HSP 1 Score: 341.7 bits (875), Expect = 3.7e-90
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60
           MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD
Sbjct: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60

Query: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120
           LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG
Sbjct: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120

Query: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET 170
           FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET
Sbjct: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET 169

[Close]

BLAST of Pay0006390 vs. NCBI nr
Match: XP_008437258.1 (PREDICTED: putative pre-16S rRNA nuclease isoform X2 [Cucumis melo])

HSP 1 Score: 308.9 bits (790), Expect = 2.7e-80
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60
           MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD
Sbjct: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60

Query: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120
           LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG
Sbjct: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120

Query: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ 155
           FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ
Sbjct: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ 154

[Close]

BLAST of Pay0006390 vs. NCBI nr
Match: KAA0042764.1 (putative pre-16S rRNA nuclease isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 307.8 bits (787), Expect = 5.9e-80
Identity = 153/156 (98.08%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60
           MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD
Sbjct: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60

Query: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120
           LMA+DFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG
Sbjct: 61  LMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120

Query: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGY 157
           FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ +
Sbjct: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQTF 156

[Close]

BLAST of Pay0006390 vs. NCBI nr
Match: XP_004143911.1 (uncharacterized protein LOC101219574 [Cucumis sativus] >XP_011654757.1 uncharacterized protein LOC101219574 [Cucumis sativus] >KGN50104.1 hypothetical protein Csa_000396 [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 2.3e-79
Identity = 148/169 (87.57%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60
           MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMD
Sbjct: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60

Query: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120
           LMA+DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFIDDLCKTGKLEGVKYTFWDE 
Sbjct: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET 170
           FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Sbjct: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 169

[Close]

BLAST of Pay0006390 vs. NCBI nr
Match: XP_038875331.1 (putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida] >XP_038875332.1 putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida])

HSP 1 Score: 279.6 bits (714), Expect = 1.7e-71
Identity = 137/168 (81.55%), Postives = 151/168 (89.88%), Query Frame = 0


Query: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60
           MKYVKP  LFRDLLKR+ L+H RLLGLDVGDKYVGLAVSDPDNKIASPLSVL+RKK  M 
Sbjct: 1   MKYVKPLNLFRDLLKRNGLEHGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMH 60

Query: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120
           LMAEDF++LIS+FSLAGFIVGYP  RLR+N +A+QVKIFID+LCKTGKLE VKYTFWDE 
Sbjct: 61  LMAEDFERLISKFSLAGFIVGYPSLRLRRNPDAVQVKIFIDELCKTGKLEDVKYTFWDEC 120

Query: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSE 169
           FTSKNVE +IKPL L P +SKT++DKFAAVGILQGYLDYFNRRPEL E
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTVMDKFAAVGILQGYLDYFNRRPELEE 168

[Close]

BLAST of Pay0006390 vs. TAIR 10
Match: AT3G52905.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 199.5 bits (506), Expect = 2.1e-51
Identity = 99/162 (61.11%), Postives = 118/162 (72.84%), Query Frame = 0


Query: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60
           MKYVKP  L  + LK       R LGLDVGDKYVGLA+SDP N +ASPLSVLLRKK+ +D
Sbjct: 1   MKYVKPLSLLGNALKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNID 60

Query: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120
           LMA DFQ L+  FS++G +VGYPF +L    + + V +FI++L KT KL+ VKYT+WDE 
Sbjct: 61  LMATDFQNLVKAFSVSGLVVGYPFGKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDER 120

Query: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNR 163
            +SK VE M+KPLNL P   KTMLDK AAV ILQ YLDY NR
Sbjct: 121 LSSKTVELMLKPLNLHPVQEKTMLDKLAAVVILQEYLDYANR 162

The following BLAST results are available for this feature:

BLAST of Pay0006390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4XKC6	8.2e-16	36.30	Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor saccharolyticus (strain A...	[more]
B9MRK7	1.4e-15	35.00	Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor bescii (strain ATCC BAA-1...	[more]
C4Z578	4.5e-14	31.39	Putative pre-16S rRNA nuclease OS=Lachnospira eligens (strain ATCC 27750 / DSM 3...	[more]
B6IN25	2.9e-13	33.78	Putative pre-16S rRNA nuclease OS=Rhodospirillum centenum (strain ATCC 51521 / S...	[more]
Q3AEN4	3.8e-13	32.85	Putative pre-16S rRNA nuclease OS=Carboxydothermus hydrogenoformans (strain ATCC...	[more]

BLAST of Pay0006390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3ATQ4	1.8e-90	100.00	putative pre-16S rRNA nuclease isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348274...	[more]
A0A1S3ATK5	1.3e-80	100.00	putative pre-16S rRNA nuclease isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348274...	[more]
A0A5A7THE9	2.9e-80	98.08	Putative pre-16S rRNA nuclease isoform X2 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0KMK7	1.1e-79	87.57	YqgFc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G153680 PE=3 ...	[more]
A0A6J1K3L4	1.8e-69	79.17	uncharacterized protein LOC111490857 OS=Cucurbita maxima OX=3661 GN=LOC111490857...	[more]

BLAST of Pay0006390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437257.1	3.7e-90	100.00	PREDICTED: putative pre-16S rRNA nuclease isoform X1 [Cucumis melo]	[more]
XP_008437258.1	2.7e-80	100.00	PREDICTED: putative pre-16S rRNA nuclease isoform X2 [Cucumis melo]	[more]
KAA0042764.1	5.9e-80	98.08	putative pre-16S rRNA nuclease isoform X2 [Cucumis melo var. makuwa]	[more]
XP_004143911.1	2.3e-79	87.57	uncharacterized protein LOC101219574 [Cucumis sativus] >XP_011654757.1 uncharact...	[more]
XP_038875331.1	1.7e-71	81.55	putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida] >XP_038875332.1 pu...	[more]

BLAST of Pay0006390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52905.1	2.1e-51	61.11	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006641	YqgF/RNase H-like domain	SMART	SM00732	rnase_8s	coord: 22..126 e-value: 1.1E-17 score: 74.7
IPR005227	Putative pre-16S rRNA nuclease	PFAM	PF03652	RuvX	coord: 23..158 e-value: 9.8E-28 score: 97.2
IPR005227	Putative pre-16S rRNA nuclease	TIGRFAM	TIGR00250	TIGR00250	coord: 25..158 e-value: 1.8E-14 score: 51.9
IPR005227	Putative pre-16S rRNA nuclease	PANTHER	PTHR33317	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 1..165
IPR005227	Putative pre-16S rRNA nuclease	HAMAP	MF_00651	Nuclease_YqgF	coord: 22..161 score: 17.296129
IPR005227	Putative pre-16S rRNA nuclease	CDD	cd16964	YqgF	coord: 24..158 e-value: 5.73036E-32 score: 109.499
IPR037027	YqgF/RNase H-like domain superfamily	GENE3D	3.30.420.140		coord: 21..165 e-value: 1.5E-30 score: 107.9
None	No IPR available	PANTHER	PTHR33317:SF1	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 1..165
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 22..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0006390.1	Pay0006390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000967	rRNA 5'-end processing
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0006364	rRNA processing