Pay0006173 (gene) Melon (Payzawat) v1

Overview


Name	Pay0006173
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribulose bisphosphate carboxylase large chain
Location	chr07: 7254378 .. 7256147 (-)
RNA-Seq Expression	Pay0006173
Synteny	Pay0006173

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGGGTAATTTCTTGGTCCTTTGCCGGTACGTGTGGAATCAAAAGTACAAGAAAAGGGACACCATTTGCGGCTCAAATCGCAACAGGATATGCTATTCGAGCAGTAGTGGATCAAGGGATGCAACGAGCTGAAGTTATGATAAAGGGCCTTGGTCTCAGAAGAGATGCAACATTAAGAGCTATTCCAAGAAGTTGAATTATAGGGTGGTTAGGGTCTTTATAGACTGTATCGCAAATTCTTTGTTCCATCTTTCCTTAAAATTGAATCTACTTTTCCAGAGCGTAGTGACTGAATCTGCTTTAAAATAGATAGCTACCTCGAAGCGAGGGGAGCCGTAACGTAACGGACAATAGTTTCATAATGAATGCAGACCGAATTAACAAGCCAATGTACCGAATCGCTGGATCCGTTGATTTTCTTTCTTTATGCAAGATCGGATGATTTGTCACTTTCTAAATCTTATTCTTTCTCAACAATATCTCTGTCTTATGGAGCTTTATAATGAAACCAAAGATACTGATATCTTGGTAGCATTCCAAGTAACTCCTCAATCAGAAGTTCCACCGCTTCGTGGGGAAGCAGGGATCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGAGATTACCAGTCTTGATCGTTGATGCTATGGAATCGAGCTTGTTGCTGGAGAAGAAAATCAATATATTGCTTATGTAGCTTATCCCCTAGACCTTTTTGAAGAAGGTTATGTTACTAACATGTTTACTTCCATTGTGGGTAATGTATTTGGATTCAAGGCTCTATGTGCTCTAGATCTGGAGGATTTGTGAATCCCTACTGCTTATATTCAGACTTTCTAAGGCCCGCCTTATGGTATCCAAGTTGAAAGAGATAAATTGAACAAGTATGGTCGCCCTTTAATGGGTTGTACTATTAAACCAAAATTAGGATTATTCGCTAAGAATTATGGTAGAGCAGTTTATGAATGTCTACTCGGTGGACTTGATTTTACCAAAGATGATAAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCATTTCCTATTTTGTGCAGAAGCTATTTTGAAATCACAAGCTAAAACAGGTGAAGTCAAAGGACATTACTTTAATGCTACTGTAGGTACATGCGAAGAAATGATGAAAAGGGATATATTTTCCTGAGAATTGGGAGTTCCTATTGTCATGCATGATTACTTAACAGGTGGATTCACTGCAAATACTAGCTTGGCTCATTATTGCCGAGATAATGGTCTACTTCTGAACATTCACTCCAATGCATGCTGTTATTGATAGACAGAAGAATCATGGTATGCACTTTCGTGTATTAGTTAAAGCGTTACGTATGTCCGGTGGAGACCATATTCACGCTGGTATCGTAGTAGGTAAACTTGAAGGGAAAAGAGAAATCACTTTAGGATTTGTAGATTTACTACGTGATGATTTTCTTGAAAAAGACCGAAGTCGTGATATTTATTTCACTCAAGGTTGGGTCTCTTTACCCGGTGTTTTGCCAATGGCTTTTAGTGGTATTCACGTTTGGCATATGACTGCTCTAACCAAGATTTTTGGAGATGATTCTGTACTACAATTCGGTGAAGGAACTTTGGGGCACCCTTGGGGTCATGCACCTGGTGCCATAGCTAATCGGGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTAATGAAATTATCCATGAGGCTTGTAAATAA

mRNA sequence

ATGGGTCGGGTAATTTCTTGGTCCTTTGCCGGTACGTGTGGAATCAAAAGTACAAGAAAAGGGACACCATTTGCGGCTCAAATCGCAACAGGATATGCTATTCGAGCAGTAGTGGATCAAGGGATGCAACGAGCTGAACTTTATAATGAAACCAAAGATACTGATATCTTGGTAGCATTCCAAGTAACTCCTCAATCAGAAGTTCCACCGCTTCGTGGGGAAGCAGGGATCGCTGTAGCTGCTGAATCTTCTACTGGCCCGCCTTATGGTATCCAAGTTGAAAGAGATAAATTGAACAAGTATGGTCGCCCTTTAATGGGTTGTACTATTAAACCAAAATTAGGATTATTCGCTAAGAATTATGGTAGAGCAGTTTATGAATGTCTACTCGGTGGACTTGATTTTACCAAAGATGATAAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCATTTCCTATTTTGTGCAGAAGCTATTTTGAAATCACAAGCTAAAACAGGTGAAGTCAAAGGACATTACTTTAATGCTACTGTAGGTTGGGTCTCTTTACCCGGTGTTTTGCCAATGGCTTTTAGTGGTATTCACGTTTGGCATATGACTGCTCTAACCAAGATTTTTGGAGATGATTCTGTACTACAATTCGGTGAAGGAACTTTGGGGCACCCTTGGGGTCATGCACCTGGTGCCATAGCTAATCGGGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTAATGAAATTATCCATGAGGCTTGTAAATAA

Coding sequence (CDS)

ATGGGTCGGGTAATTTCTTGGTCCTTTGCCGGTACGTGTGGAATCAAAAGTACAAGAAAAGGGACACCATTTGCGGCTCAAATCGCAACAGGATATGCTATTCGAGCAGTAGTGGATCAAGGGATGCAACGAGCTGAACTTTATAATGAAACCAAAGATACTGATATCTTGGTAGCATTCCAAGTAACTCCTCAATCAGAAGTTCCACCGCTTCGTGGGGAAGCAGGGATCGCTGTAGCTGCTGAATCTTCTACTGGCCCGCCTTATGGTATCCAAGTTGAAAGAGATAAATTGAACAAGTATGGTCGCCCTTTAATGGGTTGTACTATTAAACCAAAATTAGGATTATTCGCTAAGAATTATGGTAGAGCAGTTTATGAATGTCTACTCGGTGGACTTGATTTTACCAAAGATGATAAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCATTTCCTATTTTGTGCAGAAGCTATTTTGAAATCACAAGCTAAAACAGGTGAAGTCAAAGGACATTACTTTAATGCTACTGTAGGTTGGGTCTCTTTACCCGGTGTTTTGCCAATGGCTTTTAGTGGTATTCACGTTTGGCATATGACTGCTCTAACCAAGATTTTTGGAGATGATTCTGTACTACAATTCGGTGAAGGAACTTTGGGGCACCCTTGGGGTCATGCACCTGGTGCCATAGCTAATCGGGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTAATGAAATTATCCATGAGGCTTGTAAATAA

Protein sequence

MGRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAELYNETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVNSQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFNATVGWVSLPGVLPMAFSGIHVWHMTALTKIFGDDSVLQFGEGTLGHPWGHAPGAIANRVALEACVQARNEGRDLAREGNEIIHEACK

Homology

[Close]

BLAST of Pay0006173 vs. ExPASy Swiss-Prot
Match: P28395 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Crassula marnierana OX=45093 GN=rbcL PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 4.6e-82
Identity = 187/423 (44.21%), Postives = 197/423 (46.57%), Query Frame = 0


Query: 50  ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST------------------------ 109
           ETKDTDIL AF+VTPQ  VPP   EAG AVAAESST                        
Sbjct: 20  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHI 79

Query: 110 ------------------------------------------------------------ 169
                                                                       
Sbjct: 80  EPVAGEENQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPVAYVKT 139

Query: 170 --GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVN 229
             GPP+GIQVERDKLNKYGRPL+GCTIKPKLGL AKNYGRAVYECL GGLDFTKDD+NVN
Sbjct: 140 FQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVN 199

Query: 230 SQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFNATVG---------------------- 265
           SQPFMRWRD FLFCAEAI KSQA+TGE+KGHY NAT G                      
Sbjct: 200 SQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMH 259

[Close]

BLAST of Pay0006173 vs. ExPASy Swiss-Prot
Match: B0Z4K9 (Ribulose bisphosphate carboxylase large chain OS=Oenothera argillicola OX=3940 GN=rbcL PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 4.6e-82
Identity = 187/423 (44.21%), Postives = 197/423 (46.57%), Query Frame = 0


Query: 50  ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST------------------------ 109
           ETKDTDIL AF+VTPQ  VPP   EAG AVAAESST                        
Sbjct: 30  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHI 89

Query: 110 ------------------------------------------------------------ 169
                                                                       
Sbjct: 90  EPVAGEENQYICYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPTAYVKT 149

Query: 170 --GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVN 229
             GPP+GIQVERDKLNKYGRPL+GCTIKPKLGL AKNYGRAVYECL GGLDFTKDD+NVN
Sbjct: 150 FQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVN 209

Query: 230 SQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFNATVG---------------------- 265
           SQPFMRWRD FLFCAEAI KSQA+TGE+KGHY NAT G                      
Sbjct: 210 SQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMH 269

[Close]

BLAST of Pay0006173 vs. ExPASy Swiss-Prot
Match: B0Z4U3 (Ribulose bisphosphate carboxylase large chain OS=Oenothera biennis OX=3942 GN=rbcL PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 4.6e-82
Identity = 187/423 (44.21%), Postives = 197/423 (46.57%), Query Frame = 0


Query: 50  ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST------------------------ 109
           ETKDTDIL AF+VTPQ  VPP   EAG AVAAESST                        
Sbjct: 30  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHI 89

Query: 110 ------------------------------------------------------------ 169
                                                                       
Sbjct: 90  EPVAGEENQYICYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPTAYVKT 149

Query: 170 --GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVN 229
             GPP+GIQVERDKLNKYGRPL+GCTIKPKLGL AKNYGRAVYECL GGLDFTKDD+NVN
Sbjct: 150 FQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVN 209

Query: 230 SQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFNATVG---------------------- 265
           SQPFMRWRD FLFCAEAI KSQA+TGE+KGHY NAT G                      
Sbjct: 210 SQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMH 269

[Close]

BLAST of Pay0006173 vs. ExPASy Swiss-Prot
Match: Q9MTP9 (Ribulose bisphosphate carboxylase large chain OS=Oenothera elata subsp. hookeri OX=85636 GN=rbcL PE=3 SV=2)

HSP 1 Score: 305.8 bits (782), Expect = 4.6e-82
Identity = 187/423 (44.21%), Postives = 197/423 (46.57%), Query Frame = 0


Query: 50  ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST------------------------ 109
           ETKDTDIL AF+VTPQ  VPP   EAG AVAAESST                        
Sbjct: 30  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHI 89

Query: 110 ------------------------------------------------------------ 169
                                                                       
Sbjct: 90  EPVAGEENQYICYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPTAYVKT 149

Query: 170 --GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVN 229
             GPP+GIQVERDKLNKYGRPL+GCTIKPKLGL AKNYGRAVYECL GGLDFTKDD+NVN
Sbjct: 150 FQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVN 209

Query: 230 SQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFNATVG---------------------- 265
           SQPFMRWRD FLFCAEAI KSQA+TGE+KGHY NAT G                      
Sbjct: 210 SQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMH 269

[Close]

BLAST of Pay0006173 vs. ExPASy Swiss-Prot
Match: B0Z527 (Ribulose bisphosphate carboxylase large chain OS=Oenothera glazioviana OX=482428 GN=rbcL PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 4.6e-82
Identity = 187/423 (44.21%), Postives = 197/423 (46.57%), Query Frame = 0


Query: 50  ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST------------------------ 109
           ETKDTDIL AF+VTPQ  VPP   EAG AVAAESST                        
Sbjct: 30  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHI 89

Query: 110 ------------------------------------------------------------ 169
                                                                       
Sbjct: 90  EPVAGEENQYICYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPTAYVKT 149

Query: 170 --GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVN 229
             GPP+GIQVERDKLNKYGRPL+GCTIKPKLGL AKNYGRAVYECL GGLDFTKDD+NVN
Sbjct: 150 FQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVN 209

Query: 230 SQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFNATVG---------------------- 265
           SQPFMRWRD FLFCAEAI KSQA+TGE+KGHY NAT G                      
Sbjct: 210 SQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMH 269

[Close]

BLAST of Pay0006173 vs. ExPASy TrEMBL
Match: A0A5A7VGG7 (Ribulose bisphosphate carboxylase large chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002610 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 6.2e-98
Identity = 194/273 (71.06%), Postives = 202/273 (73.99%), Query Frame = 0


Query: 46  ELYNETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST-------------------- 105
           ELYNETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST                    
Sbjct: 2   ELYNETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTAYPLDLFEEGYVTNMFTSIV 61

Query: 106 GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVNSQ 165
           GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVNSQ
Sbjct: 62  GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVNSQ 121

Query: 166 PFMRWRD---HFLFCAEAILKSQAK-------TGEVKGH--------------------- 225
           P  R ++   HF    +A+  S           G+++G                      
Sbjct: 122 PLNRQKNHGMHFRVLVKALRMSGGDHIHAGIVVGKLEGKREITLGFVDLLRDDFLEKDRS 181

Query: 226 ---YFNATVGWVSLPGVLPMAFSGIHVWHMTALTKIFGDDSVLQFGEGTLGHPWGHAPGA 265
              YF  T GWVSLPGVLPMAFSGIHVWHMTALT+IFGDDSVLQFGEGTLGHPWGHAPGA
Sbjct: 182 RDIYF--TQGWVSLPGVLPMAFSGIHVWHMTALTEIFGDDSVLQFGEGTLGHPWGHAPGA 241

[Close]

BLAST of Pay0006173 vs. ExPASy TrEMBL
Match: A0A452XDZ9 (Ribulose bisphosphate carboxylase large chain OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.6e-85
Identity = 179/337 (53.12%), Postives = 192/337 (56.97%), Query Frame = 0


Query: 50  ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST------------------------ 109
           ETKDTDIL AF+V+PQ  VPP   EAG AVAAESST                        
Sbjct: 30  ETKDTDILAAFRVSPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTCLNRYKGRCYHI 89

Query: 110 ------------------------------------------------------------ 169
                                                                       
Sbjct: 90  EPVAGEDNQWICYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPTYSKT 149

Query: 170 --GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVN 229
             GPP+GIQVER KLNKYGRPL+GCTIKPKLGL AKNYGRA YECL GGLDFTKDD+NVN
Sbjct: 150 FQGPPHGIQVERHKLNKYGRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVN 209

Query: 230 SQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFNATVG---------------------- 265
           SQPFMRWRDHF+FCAEAI KSQA+TGE+KGHY N T G                      
Sbjct: 210 SQPFMRWRDHFVFCAEAIYKSQAETGEIKGHYLNVTAGDSPQILLWLIIAATMAYFFTFT 269

[Close]

BLAST of Pay0006173 vs. ExPASy TrEMBL
Match: A0A1R3L3E1 (Ribulose bisphosphate carboxylase large chain OS=Corchorus olitorius OX=93759 GN=COLO4_00933 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.0e-84
Identity = 182/358 (50.84%), Postives = 195/358 (54.47%), Query Frame = 0


Query: 50  ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST---------------------GPP 109
           + KDTDIL AF+VTPQ  VPP   EAG AVAAESST                     GPP
Sbjct: 30  QVKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTALRALRLEDLRIPPAYIKTFQGPP 89

Query: 110 YGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVNSQPFM 169
           +GIQVERDKLNKYGRPL+GCTIKPKLGL AKNYGRAVYECL GGLDFTKDD+NVNSQPFM
Sbjct: 90  HGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFM 149

Query: 170 RWRDHFLFCAEAILKSQAKTGEVKGHYFNATV---------------------------- 229
           RWRD FLFCAEAI KSQA+TGE+KGHY NAT                             
Sbjct: 150 RWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTG 209

Query: 230 ------------------------------------------------------------ 265
                                                                       
Sbjct: 210 GFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVV 269

[Close]

BLAST of Pay0006173 vs. ExPASy TrEMBL
Match: M8A2T1 (Ribulose bisphosphate carboxylase large chain OS=Triticum urartu OX=4572 GN=TRIUR3_00065 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.1e-83
Identity = 184/368 (50.00%), Postives = 195/368 (52.99%), Query Frame = 0


Query: 50  ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST------------------------ 109
           ETKDTDIL AF+VTPQ  VPP   EAG AVAAESST                        
Sbjct: 30  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHI 89

Query: 110 ------------------------------------------------------------ 169
                                                                       
Sbjct: 90  EPVPGEESQFIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYTKT 149

Query: 170 --GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVN 229
             GPP+GIQVERDKLNKYGRPL+GCTIKPKLGL AKNYGRAVYECL GGLDFTKDD+NVN
Sbjct: 150 FQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVN 209

Query: 230 SQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFNATV----------------------- 265
           SQPFMRWRD FLFCAEAI KSQ++TGE+KGHY NAT                        
Sbjct: 210 SQPFMRWRDRFLFCAEAIFKSQSETGEIKGHYLNATAVIDRQKNHGIHFRVLAKALRMSG 269

[Close]

BLAST of Pay0006173 vs. ExPASy TrEMBL
Match: A0A6A1W2I4 (Ribulose bisphosphate carboxylase large chain OS=Morella rubra OX=262757 GN=CJ030_MR3G018692 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.5e-83
Identity = 183/368 (49.73%), Postives = 195/368 (52.99%), Query Frame = 0


Query: 50  ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST------------------------ 109
           ETKDTDIL AF+VTPQ  VPP   EAG AVAAESST                        
Sbjct: 37  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHI 96

Query: 110 ------------------------------------------------------------ 169
                                                                       
Sbjct: 97  EPVAGEESQFIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPTSYVKT 156

Query: 170 --GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVN 229
             GPP+GIQVERDKLNKYGRPL+GCTIKPKLGL AKNYGRAVYECL GGLDFTKDD+NVN
Sbjct: 157 FQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVN 216

Query: 230 SQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFNATV----------------------- 265
           SQPFMRWRD FLFCAEA+ K+QA+TGE+KGHY NAT                        
Sbjct: 217 SQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAVIDRQKNHGMHFRVLAKALRMSG 276

[Close]

BLAST of Pay0006173 vs. NCBI nr
Match: KAA0066868.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cucumis melo var. makuwa] >TYK28015.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cucumis melo var. makuwa])

HSP 1 Score: 367.1 bits (941), Expect = 1.3e-97
Identity = 194/273 (71.06%), Postives = 202/273 (73.99%), Query Frame = 0


Query: 46  ELYNETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST-------------------- 105
           ELYNETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST                    
Sbjct: 2   ELYNETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTAYPLDLFEEGYVTNMFTSIV 61

Query: 106 GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVNSQ 165
           GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVNSQ
Sbjct: 62  GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVNSQ 121

Query: 166 PFMRWRD---HFLFCAEAILKSQAK-------TGEVKGH--------------------- 225
           P  R ++   HF    +A+  S           G+++G                      
Sbjct: 122 PLNRQKNHGMHFRVLVKALRMSGGDHIHAGIVVGKLEGKREITLGFVDLLRDDFLEKDRS 181

Query: 226 ---YFNATVGWVSLPGVLPMAFSGIHVWHMTALTKIFGDDSVLQFGEGTLGHPWGHAPGA 265
              YF  T GWVSLPGVLPMAFSGIHVWHMTALT+IFGDDSVLQFGEGTLGHPWGHAPGA
Sbjct: 182 RDIYF--TQGWVSLPGVLPMAFSGIHVWHMTALTEIFGDDSVLQFGEGTLGHPWGHAPGA 241

[Close]

BLAST of Pay0006173 vs. NCBI nr
Match: QHN90747.1 (Ribulose bisphosphate carboxylase large chain [Arachis hypogaea])

HSP 1 Score: 324.7 bits (831), Expect = 7.3e-85
Identity = 186/365 (50.96%), Postives = 196/365 (53.70%), Query Frame = 0


Query: 50  ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST------------------------ 109
           ETKDTDIL AF+VTPQ  VPP   EAG AVAAESST                        
Sbjct: 37  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGNVFGFKALRALRLEDLRIPISYI 96

Query: 110 ----GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKN 169
               GPP+GIQVERDKLNKYGRPL+GCTIKPKLGL AKNYGRAVYECL GGLDFTKDD+N
Sbjct: 97  KTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDEN 156

Query: 170 VNSQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFNATVG-------------------- 229
           VNSQPFMRWRD FLFCAEAI KSQA+TGE+KGHY NAT G                    
Sbjct: 157 VNSQPFMRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGAPIV 216

Query: 230 ------------------------------------------------------------ 265
                                                                       
Sbjct: 217 MHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDH 276

[Close]

BLAST of Pay0006173 vs. NCBI nr
Match: OMP13798.1 (hypothetical protein COLO4_00933 [Corchorus olitorius])

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-84
Identity = 182/358 (50.84%), Postives = 195/358 (54.47%), Query Frame = 0


Query: 50  ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST---------------------GPP 109
           + KDTDIL AF+VTPQ  VPP   EAG AVAAESST                     GPP
Sbjct: 30  QVKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTALRALRLEDLRIPPAYIKTFQGPP 89

Query: 110 YGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVNSQPFM 169
           +GIQVERDKLNKYGRPL+GCTIKPKLGL AKNYGRAVYECL GGLDFTKDD+NVNSQPFM
Sbjct: 90  HGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFM 149

Query: 170 RWRDHFLFCAEAILKSQAKTGEVKGHYFNATV---------------------------- 229
           RWRD FLFCAEAI KSQA+TGE+KGHY NAT                             
Sbjct: 150 RWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTG 209

Query: 230 ------------------------------------------------------------ 265
                                                                       
Sbjct: 210 GFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVV 269

[Close]

BLAST of Pay0006173 vs. NCBI nr
Match: EMS54729.1 (Ribulose bisphosphate carboxylase large chain [Triticum urartu])

HSP 1 Score: 319.7 bits (818), Expect = 2.4e-83
Identity = 184/368 (50.00%), Postives = 195/368 (52.99%), Query Frame = 0


Query: 50  ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST------------------------ 109
           ETKDTDIL AF+VTPQ  VPP   EAG AVAAESST                        
Sbjct: 30  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHI 89

Query: 110 ------------------------------------------------------------ 169
                                                                       
Sbjct: 90  EPVPGEESQFIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYTKT 149

Query: 170 --GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVN 229
             GPP+GIQVERDKLNKYGRPL+GCTIKPKLGL AKNYGRAVYECL GGLDFTKDD+NVN
Sbjct: 150 FQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVN 209

Query: 230 SQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFNATV----------------------- 265
           SQPFMRWRD FLFCAEAI KSQ++TGE+KGHY NAT                        
Sbjct: 210 SQPFMRWRDRFLFCAEAIFKSQSETGEIKGHYLNATAVIDRQKNHGIHFRVLAKALRMSG 269

[Close]

BLAST of Pay0006173 vs. NCBI nr
Match: KAB1219093.1 (Ribulose bisphosphate carboxylase large chain [Morella rubra])

HSP 1 Score: 318.5 bits (815), Expect = 5.3e-83
Identity = 183/368 (49.73%), Postives = 195/368 (52.99%), Query Frame = 0


Query: 50  ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST------------------------ 109
           ETKDTDIL AF+VTPQ  VPP   EAG AVAAESST                        
Sbjct: 37  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHI 96

Query: 110 ------------------------------------------------------------ 169
                                                                       
Sbjct: 97  EPVAGEESQFIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPTSYVKT 156

Query: 170 --GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVN 229
             GPP+GIQVERDKLNKYGRPL+GCTIKPKLGL AKNYGRAVYECL GGLDFTKDD+NVN
Sbjct: 157 FQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVN 216

Query: 230 SQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFNATV----------------------- 265
           SQPFMRWRD FLFCAEA+ K+QA+TGE+KGHY NAT                        
Sbjct: 217 SQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAVIDRQKNHGMHFRVLAKALRMSG 276

[Close]

BLAST of Pay0006173 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 302.8 bits (774), Expect = 2.8e-82
Identity = 186/423 (43.97%), Postives = 196/423 (46.34%), Query Frame = 0


Query: 50  ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESST------------------------ 109
           ETKDTDIL AF+VTPQ  VPP   EAG AVAAESST                        
Sbjct: 30  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHI 89

Query: 110 ------------------------------------------------------------ 169
                                                                       
Sbjct: 90  EPVPGEETQFIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALAALRLEDLRIPPAYTKT 149

Query: 170 --GPPYGIQVERDKLNKYGRPLMGCTIKPKLGLFAKNYGRAVYECLLGGLDFTKDDKNVN 229
             GPP+GIQVERDKLNKYGRPL+GCTIKPKLGL AKNYGRAVYECL GGLDFTKDD+NVN
Sbjct: 150 FQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVN 209

Query: 230 SQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFNATVG---------------------- 265
           SQPFMRWRD FLFCAEAI KSQA+TGE+KGHY NAT G                      
Sbjct: 210 SQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMH 269

[Close]

BLAST of Pay0006173 vs. TAIR 10
Match: ATMG00280.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-27
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 118 AKNYGRAVYECLLGGLDFTKDDKNVNSQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFN 177
           AKNYGRAVYECL GGL FTKDD+NVNSQPFMRWRD FLFCAEA+ K+QA+TG +KGHY N
Sbjct: 14  AKNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHYLN 73

Query: 178 ATVG 182
           AT G
Sbjct: 74  ATAG 77

[Close]

BLAST of Pay0006173 vs. TAIR 10
Match: AT2G07732.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-27
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 118 AKNYGRAVYECLLGGLDFTKDDKNVNSQPFMRWRDHFLFCAEAILKSQAKTGEVKGHYFN 177
           AKNYGRAVYECL GGL FTKDD+NVNSQPFMRWRD FLFCAEA+ K+QA+TG +KGHY N
Sbjct: 14  AKNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHYLN 73

Query: 178 ATVG 182
           AT G
Sbjct: 74  ATPG 77

[Close]

BLAST of Pay0006173 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-14
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 2  GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEL 48
          GRVISWS AGTCG + TR+GTPFAAQ A G AIRAVVDQGMQRAE+
Sbjct: 48 GRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV 93

The following BLAST results are available for this feature:

BLAST of Pay0006173 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P28395	4.6e-82	44.21	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Crassula marnierana ...	[more]
B0Z4K9	4.6e-82	44.21	Ribulose bisphosphate carboxylase large chain OS=Oenothera argillicola OX=3940 G...	[more]
B0Z4U3	4.6e-82	44.21	Ribulose bisphosphate carboxylase large chain OS=Oenothera biennis OX=3942 GN=rb...	[more]
Q9MTP9	4.6e-82	44.21	Ribulose bisphosphate carboxylase large chain OS=Oenothera elata subsp. hookeri ...	[more]
B0Z527	4.6e-82	44.21	Ribulose bisphosphate carboxylase large chain OS=Oenothera glazioviana OX=482428...	[more]

BLAST of Pay0006173 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGG7	6.2e-98	71.06	Ribulose bisphosphate carboxylase large chain OS=Cucumis melo var. makuwa OX=119...	[more]
A0A452XDZ9	1.6e-85	53.12	Ribulose bisphosphate carboxylase large chain OS=Aegilops tauschii subsp. strang...	[more]
A0A1R3L3E1	1.0e-84	50.84	Ribulose bisphosphate carboxylase large chain OS=Corchorus olitorius OX=93759 GN...	[more]
M8A2T1	1.1e-83	50.00	Ribulose bisphosphate carboxylase large chain OS=Triticum urartu OX=4572 GN=TRIU...	[more]
A0A6A1W2I4	2.5e-83	49.73	Ribulose bisphosphate carboxylase large chain OS=Morella rubra OX=262757 GN=CJ03...	[more]

BLAST of Pay0006173 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066868.1	1.3e-97	71.06	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cucumis melo var....	[more]
QHN90747.1	7.3e-85	50.96	Ribulose bisphosphate carboxylase large chain [Arachis hypogaea]	[more]
OMP13798.1	2.1e-84	50.84	hypothetical protein COLO4_00933 [Corchorus olitorius]	[more]
EMS54729.1	2.4e-83	50.00	Ribulose bisphosphate carboxylase large chain [Triticum urartu]	[more]
KAB1219093.1	5.3e-83	49.73	Ribulose bisphosphate carboxylase large chain [Morella rubra]	[more]

BLAST of Pay0006173 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00490.1	2.8e-82	43.97	ribulose-bisphosphate carboxylases	[more]
ATMG00280.1	1.5e-27	81.25	Ribulose bisphosphate carboxylase large chain, catalytic domain	[more]
AT2G07732.1	2.6e-27	81.25	Ribulose bisphosphate carboxylase large chain, catalytic domain	[more]
ATCG00750.1	1.5e-14	80.43	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	PFAM	PF00016	RuBisCO_large	coord: 90..179 e-value: 5.0E-38 score: 131.0 coord: 182..254 e-value: 2.0E-18 score: 66.7
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 50..97 e-value: 5.7E-5 score: 23.3
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 2..47 e-value: 3.5E-9 score: 37.0
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	GENE3D	3.20.20.110		coord: 180..264 e-value: 3.2E-28 score: 100.5
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	GENE3D	3.20.20.110		coord: 85..179 e-value: 7.7E-44 score: 152.1
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	SUPERFAMILY	51649	RuBisCo, C-terminal domain	coord: 86..264
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 1..73 e-value: 2.9E-7 score: 32.6
None	No IPR available	PANTHER	PTHR42704:SF6	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	coord: 180..264 coord: 47..85 coord: 86..181
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 2..52
IPR033966	RuBisCO	PANTHER	PTHR42704	RIBULOSE BISPHOSPHATE CARBOXYLASE	coord: 180..264 coord: 47..85 coord: 86..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0006173.1	Pay0006173.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006412	translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity
molecular_function	GO:0003735	structural constituent of ribosome