Pay0006062 (gene) Melon (Payzawat) v1

Overview


Name	Pay0006062
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	5'-nucleotidase domain-containing protein
Location	chr11: 18789646 .. 18793207 (+)
RNA-Seq Expression	Pay0006062
Synteny	Pay0006062

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAAATCGTCCTTGAGATTATCCCACAAAATGCAAATGAAACACAAGAAATCTTGGATCTCATTCAACAATTCATTGATTTAAGCATGGTGATGACTTTTTAAAATTTTGGAATGCAAGAATTAGTTAAATTTTTTCAATTTTGGAAGTAAACAAGTTCTTGACTATCAAATATTTGGACTCCCAAGTATATTTTGGCCATTTGAGAATACTTTTTATTTTGAAATTTAAAAACAAAACCTTCCATCTTGATGCCGAGTCCGACTGAGATGAAGTGAGAAATTATGTTAGAAACCACCTTTTAAACCTTTGTACAGATTTTAGGTGTCGAAGTTGGCCGAGAAAACAATTTACGTGGTTTTGTAGGAGTGTGTTATTCTTAAAGCCTAAAACCAAAAGTGTATTAATTTAGCCAATTTTCCAAAAATTCTGTCCAATCTTCAGGAACCTCCACCGTAGCAAGACCCACGACTGGCCACGTGTCTCTCCATCGTCTGGAACTTCGACGTTGCAAGACCCACGCCCGGTCATGCCTCTCTCCATTGTCTGGAACCTCGCCTTGTATCCGATTTCCCCCTCTTTTCTTCTATTCTCCAAGACCCGTAGCATAACCATTTGGATTTAGTAGTAAGCGAAGGTTTGTTCTTTTCCCGATTTCTTCTTCACACTTCCTTTTTCATTCACTTATTTCAATTCATCCTTTCATTTTTTATGATTTAGCTTTTCCAATTTCTTGCATTTATCCTTGTAGCCCCAAGTAGCTTTACATATTTAATTAGATTAACTTTTTTAAAATATCAAAGATTTGTTGGTGATGGGTTTATGCTTCAACGGGGTTTTCTCTCATTAAATTTGTTCATATAATTCTTTAAAGTCTCCTATTTTCTTGTTCCTTTTGTCATTTATGCAATATTGAGTAATGAGATCGTTTTTATTTGCTTGAATATTGGTGTTTATCAGAGTTTGGGTAAGATGGAAAAGTCGTCTCTACATGCATTTCTCTTCCCTTTTTATGTATTTGTTTTTGAGTGAGAATATGTAGAACTTCGAACCACACTTCAAAAATCAAACTGGTTGTGAGACTGAATCAGAAAGAGGGTTTGTTTTTTCTTTGTGATTCTATAATTTTTTTCATGGATTGATTATAAGTTGCTTTTGGTGGCTGCTTTACTTTGGCTTTGGAGCTCCACAAGGTATATCTTTTCTTCTTTTCGATTTGCATCCCTTTCTCCTTTAATCGGTTGTTTTCGTCAAATATAGTGTAAGAGATAGACCTATTACCATTTTGTTTGAGAATTGGAGGACTTTACCACGGGAACTAGGTGGAATGCGGTCATGAGGAACTCCAAAAGATTCGTCAGGAATTTGACGCTGCTAAACTTAGCTTACTCAAGATTTCTGAGGTGCTCAGGGCAGTTCTGAAGTTGAACCTGAAGGTTTTTTCTTAATCTTTTCCTGATGCTTCTGACGTTTAGATTGTGTATTCTCATGATACTTGATTGATTTTTTTTTCATTGTCAATATTGTCTAGGCATTTATGTGACGAAAATGTGAGCTTAGATAACATTCAAGTGTATGGTTTTGACTATGATTACACTCTTGCATTACTCGGCCAATTTATAGCACTTAATGTACGATCTTGCCAAAGAACATTTGGTTAATGAGGGTTGTCTCCGTGCTATTTGCATTTCTTGTATATCTTGCACAACAGTTCTTTTTCTCTTGTTTGTAGTTCGCCATTCTATTCTTTCAATTGAGATATCCTGAATCTTGCATGATGTTCAAGTATGATTCTACCTTTCCCATTAGAGGCCTTTACTATGATAAATTCTTTGAATTGGACACTTCTTTGGCTATTTTCTTAACCATAACCTCGTTTTAGCTGTTCTTATATATTGGGTTGGAATTTAAGTGTGTTAAATTTGATTATAAAATGTAAGAGTAAATGGGTTTTGAGTTAAAGGTTGGATGAAGCTACATTTTTATTTTGCATGTTTGACATGCTTTTCGTTTGCAATATGTTCATATTTAATGCACTTTGTATATAAATCTTATACTATTTCTGGGATAATATACCCATGTTTGTTGGGACAATTTTGTCGTGAGATTAAAAAATTGATGAAAAGCACCTTATTATGATATTTGTTTTTATGTATGCATCAAGTGGTTGAATCCTCTTTTTTATTGTTTACATTGTAAAGTAAACTCACTTAATGACTAAGAACTTCTATTAACCATGTTTCTGTGCTACTTAAACAAATTGTGTATGGTGGAACCTTGTGTCCATTTCTTATCTATGAATAGTGGTTGGGTCCTCTTTGTTCTTGTGAAGATTAAAGTTTCACTTCTATCTTTTAATTTTTGTGACATATGTATTTTCTAGAATGATTTGTGCTTTATAGACTTTAACATTTCAAAAAATGGAGACAATGGATCTTGCTACATCTGCTGCACCATTGAAATTAAGCCAATGTGAGTTCTTAAGTTGTTGAAGACTCACTTAGAGGAAAAGTTTTGATGTTCCGTTTTGCAATTTATTAGGGAGTAACTAATTATTGAAAACCACACATCTTAAGTTGTTAGGTTTGTTGACATCTCATACTACATTTTTGTCAGTAATGTTGGAATTTTTTACAATAATGTTAGAGTTTGTACTAATTATTTAAGCTTCATGTATAGTTTTTCTCTTTGCTTTAAGTTTTGGGCTCTAAACTTTTGTTAATGGTGATTGTCATTTTCGTTCATTGCAATTTTTGTGTCCACTTGTGTTGCGATCTATTAGTTTATCAATCTTCTTGCGTTCTTTGACATCTTCACCCCTCCTGTCTTTTTCATCTTTGACACTTTGTTGATTTCTATTTAGAGATGGGGGAGAGAGTTTTTCTTGTTTCCTTGGACTCATCTTTTAATTGTTCTTTGGAACATAAGCAAAAGAAGGGGATGCAACAATTTATTTTGTTTAGTAGTGAAATTTTAGAAAACGAGGATTTTGGTTACACTTTTTTGTCTTTCACCGGTATTGATTTTCATTAGACAAGATTATCTATTCTCTCGTTTTTGCCAAGTATTTGAGTGATTATGTAGTTTCAGGGGAAATGGTTTTGATATATCGTTTGCAGAAGCAAGGTTTGGGTTATTAGAGCTCTAGCTTCTATGGTGGTATTGTTGGAGGAGTTTAAGCTGGGAAAACGTTCTTGGTGAGTTTAAATTTGATTCTACAGTACTTTTAAATTGAAGGAATAGAGCTCAGGTAGGCTGTAATTTGTTCAAGATTTCGAAAAATGATGAAGTCTCTATGAGACAATTTTGTTTCTGTTATTCATGCTTTGGTTGTTTTTTTTTATTTCTTCACTTGAATAATCTTGCTCTAAGCAAGAATTTCACAATCCTTTTTCATTCCCAATGTATTAGAGCAGTTCCTTGTCCGGGTTGGGTCTTAAGTGTCCTAAAATATGGGTTAAAAGAGAAGTTAAGTTTTGGAGCGAAGTATTTGAAATGGAAAATGGTGTTGATATGGTCTAATTATGTTTTGGATATAGGGAGGACAAATCTGCTTAG

mRNA sequence

ATGGGTGAAATCGTCCTTGAGATTATCCCACAAAATGCAAATGAAACACAAGAAATCTTGGATCTCATTCAACAATTCATTGATTTAAGCATGTTGCTTTTGGTGGCTGCTTTACTTTGGCTTTGGAGCTCCACAAGGCATTTATGTGACGAAAATGTGAGCTTAGATAACATTCAAGTGTATGGTTTTGACTATGATTACACTCTTGCATTACTCGGCCAATTTATAGCACTTAATTTCGCCATTCTATTCTTTCAATTGAGATATCCTGAATCTTGCATGATGTTCAAAAGCAAGGTTTGGGTTATTAGAGCTCTAGCTTCTATGGTGGTATTGTTGGAGGAGTTTAAGCTGGGAAAACGTTCTTGGGAGGACAAATCTGCTTAG

Coding sequence (CDS)

ATGGGTGAAATCGTCCTTGAGATTATCCCACAAAATGCAAATGAAACACAAGAAATCTTGGATCTCATTCAACAATTCATTGATTTAAGCATGTTGCTTTTGGTGGCTGCTTTACTTTGGCTTTGGAGCTCCACAAGGCATTTATGTGACGAAAATGTGAGCTTAGATAACATTCAAGTGTATGGTTTTGACTATGATTACACTCTTGCATTACTCGGCCAATTTATAGCACTTAATTTCGCCATTCTATTCTTTCAATTGAGATATCCTGAATCTTGCATGATGTTCAAAAGCAAGGTTTGGGTTATTAGAGCTCTAGCTTCTATGGTGGTATTGTTGGAGGAGTTTAAGCTGGGAAAACGTTCTTGGGAGGACAAATCTGCTTAG

Protein sequence

MGEIVLEIIPQNANETQEILDLIQQFIDLSMLLLVAALLWLWSSTRHLCDENVSLDNIQVYGFDYDYTLALLGQFIALNFAILFFQLRYPESCMMFKSKVWVIRALASMVVLLEEFKLGKRSWEDKSA

Homology

[Close]

BLAST of Pay0006062 vs. ExPASy TrEMBL
Match: A0A5A7T188 (5'-nucleotidase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00280 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 50  DENVSLDNIQVYGFDYDYTLA-----LLGQFIALNFAILFFQLRYPESCMMFK 98
           ++N+SLDNIQVYGFDYDYTLA     L      L    L  +LRYPESCM FK
Sbjct: 104 NKNLSLDNIQVYGFDYDYTLAHYSANLQSLIYDLAKEHLVNELRYPESCMKFK 156

[Close]

BLAST of Pay0006062 vs. ExPASy TrEMBL
Match: A0A0A0LTK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277470 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 50  DENVSLDNIQVYGFDYDYTLA-----LLGQFIALNFAILFFQLRYPESCMMFK 98
           ++N+SLDNIQVYGFDYDYTLA     L      L    L  +LRYPESCM FK
Sbjct: 104 NKNLSLDNIQVYGFDYDYTLAHYSANLQSLIYDLAKEHLVNELRYPESCMKFK 156

[Close]

BLAST of Pay0006062 vs. ExPASy TrEMBL
Match: A0A1S3B8W5 (5'-nucleotidase domain-containing protein DDB_G0275467 OS=Cucumis melo OX=3656 GN=LOC103487320 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 50  DENVSLDNIQVYGFDYDYTLA-----LLGQFIALNFAILFFQLRYPESCMMFK 98
           ++N+SLDNIQVYGFDYDYTLA     L      L    L  +LRYPESCM FK
Sbjct: 162 NKNLSLDNIQVYGFDYDYTLAHYSANLQSLIYDLAKEHLVNELRYPESCMKFK 214

[Close]

BLAST of Pay0006062 vs. ExPASy TrEMBL
Match: A0A6J1C106 (5'-nucleotidase domain-containing protein DDB_G0275467 OS=Momordica charantia OX=3673 GN=LOC111007365 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-04
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 50  DENVSLDNIQVYGFDYDYTLA-----LLGQFIALNFAILFFQLRYPESCMMFK 98
           ++N+SLDNIQVYGFDYDYTLA     L      L    L  +LRYPESCM FK
Sbjct: 116 NKNLSLDNIQVYGFDYDYTLAHYSANLQSLIYDLAKEHLVNELRYPESCMEFK 168

[Close]

BLAST of Pay0006062 vs. ExPASy TrEMBL
Match: A0A803MFH6 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.4e-04
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 50  DENVSLDNIQVYGFDYDYTLALLGQFI-ALNFAI----LFFQLRYPESCMMFK 98
           ++N+ LDN+QVYGFDYDYTLA    ++ AL + +    L  +LRYPESC+ FK
Sbjct: 92  NKNLRLDNVQVYGFDYDYTLAHYSAYLQALIYDLAKEHLVNELRYPESCLKFK 144

[Close]

BLAST of Pay0006062 vs. NCBI nr
Match: XP_008443816.1 (PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-04
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 50  DENVSLDNIQVYGFDYDYTLA-----LLGQFIALNFAILFFQLRYPESCMMFK 98
           ++N+SLDNIQVYGFDYDYTLA     L      L    L  +LRYPESCM FK
Sbjct: 162 NKNLSLDNIQVYGFDYDYTLAHYSANLQSLIYDLAKEHLVNELRYPESCMKFK 214

[Close]

BLAST of Pay0006062 vs. NCBI nr
Match: KAA0035119.1 (5'-nucleotidase domain-containing protein [Cucumis melo var. makuwa] >TYJ95960.1 5'-nucleotidase domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-04
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 50  DENVSLDNIQVYGFDYDYTLA-----LLGQFIALNFAILFFQLRYPESCMMFK 98
           ++N+SLDNIQVYGFDYDYTLA     L      L    L  +LRYPESCM FK
Sbjct: 104 NKNLSLDNIQVYGFDYDYTLAHYSANLQSLIYDLAKEHLVNELRYPESCMKFK 156

[Close]

BLAST of Pay0006062 vs. NCBI nr
Match: XP_004146659.1 (5'-nucleotidase domain-containing protein DDB_G0275467 [Cucumis sativus] >KGN65260.1 hypothetical protein Csa_019920 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-04
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 50  DENVSLDNIQVYGFDYDYTLA-----LLGQFIALNFAILFFQLRYPESCMMFK 98
           ++N+SLDNIQVYGFDYDYTLA     L      L    L  +LRYPESCM FK
Sbjct: 104 NKNLSLDNIQVYGFDYDYTLAHYSANLQSLIYDLAKEHLVNELRYPESCMKFK 156

[Close]

BLAST of Pay0006062 vs. NCBI nr
Match: XP_022135405.1 (5'-nucleotidase domain-containing protein DDB_G0275467 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 6.9e-04
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 50  DENVSLDNIQVYGFDYDYTLA-----LLGQFIALNFAILFFQLRYPESCMMFK 98
           ++N+SLDNIQVYGFDYDYTLA     L      L    L  +LRYPESCM FK
Sbjct: 116 NKNLSLDNIQVYGFDYDYTLAHYSANLQSLIYDLAKEHLVNELRYPESCMEFK 168

[Close]

BLAST of Pay0006062 vs. TAIR 10
Match: AT2G23890.1 (HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 24/53 (45.28%), Postives = 31/53 (58.49%), Query Frame = 0


Query: 50  DENVSLDNIQVYGFDYDYTLA-----LLGQFIALNFAILFFQLRYPESCMMFK 98
           ++N+ LDNIQVYGFDYDYTLA     L      L    +  + RYP+ C  F+
Sbjct: 102 NKNLRLDNIQVYGFDYDYTLAHYSSHLQSLIYDLAKKHMVNEFRYPDVCTQFE 154

The following BLAST results are available for this feature:

BLAST of Pay0006062 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0006062 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T188	2.5e-04	58.49	5'-nucleotidase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0LTK5	2.5e-04	58.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277470 PE=3 SV=1	[more]
A0A1S3B8W5	2.5e-04	58.49	5'-nucleotidase domain-containing protein DDB_G0275467 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1C106	3.3e-04	58.49	5'-nucleotidase domain-containing protein DDB_G0275467 OS=Momordica charantia OX...	[more]
A0A803MFH6	7.4e-04	52.83	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]

BLAST of Pay0006062 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443816.1	5.3e-04	58.49	PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 [Cucumis melo]	[more]
KAA0035119.1	5.3e-04	58.49	5'-nucleotidase domain-containing protein [Cucumis melo var. makuwa] >TYJ95960.1...	[more]
XP_004146659.1	5.3e-04	58.49	5'-nucleotidase domain-containing protein DDB_G0275467 [Cucumis sativus] >KGN652...	[more]
XP_022135405.1	6.9e-04	58.49	5'-nucleotidase domain-containing protein DDB_G0275467 [Momordica charantia]	[more]

BLAST of Pay0006062 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23890.1	1.1e-04	45.28	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008380	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase	PFAM	PF05761	5_nucleotid	coord: 49..97 e-value: 6.3E-7 score: 28.6
IPR036412	HAD-like superfamily	SUPERFAMILY	56784	HAD-like	coord: 46..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0006062.1	Pay0006062.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity