Pay0005339 (gene) Melon (Payzawat) v1

Overview


Name	Pay0005339
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Sm domain-containing protein
Location	chr12: 21255554 .. 21257921 (+)
RNA-Seq Expression	Pay0005339
Synteny	Pay0005339

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAGGGGATGTTACTCCAACACTCTCTCTTTCATCCACGAGAAGCCAAGAATCACAATCGGCTCCCAAGTTCGCCTCTGCTACGCCGTCTACCACCCTCTCTATCCTTCTGTAACCCCTGTATGACTCTAAAACTTTAATCTCTTTTCTTTTATCCGTTTTAATTATCTTAGCAATATGTTTTCAATTTTCTACTTACTCCATTTCGTTGGATCCTTCAAGATTTCGAGGTGATTCTAAATTGATCGTTTCTTTTTCACTCCCATCTCATCATCGGGTTTCTTTTAGGCCTGAGCATGATTTGGTTGAATGTTTGATTATAAATTGAACCTGAATCAGACCAGCCTCTTAGTGGGTAATGGTTGAAGGGCATTTTATATATTAACTTGGAGATTAAGTGTTTAAGTTTCAGTAGATGCTTTCCTTCATAGAATACTGTGTTAGTTAATTTACAGATGATTCTCAATTATGAGAACAATGGATTAATCTCTGGCGCTTGACTTGTATTATAACCCTAATCAATCCACCAGTTCCGAGGATAGTTGCATTGGTGTGTGGGTATATGGTTATTAGTTATTGTGCTTTGTTGTTTTTTGTGTTGCATACTTCATGAGCTGCAGGCTTCTTGATGTATTCTAAAAGGAGGGCTAGTGAAGGTGAAATTTGATTGGATTGATTAAAAGCTAGATTGTTGAATTCATACGCTTGTTAGTGAATGTAGATTCTAATTCCTTACGCATAATTGCTTTGAAACCTGCTTCCACGTTCACTTTAATTTTAAGTATTTCCTTTAGTGCAAAGGACATTGTGCTTTCTTTGGCTTTACCCTGTCCTTATCGAAACACTCATGACTAAAAGAGGCACAACTAAGCTTTAGTTCAATTGAGTAGTTCTCTTCTCTTTATTCCTCCACTTTTCTCCTCTCTCTGTAACTTCAACTGGGCCTCCTTCAATACATCCTTATTGATCATTCTGAGAGACATTCTTTTGGTGGTGTTTTCTTTATAATTGTTTTTTTAATATAACAACTGTGAGATGGGCCTCCAACCTCTAGCATAGAGAAGATTATGTCAATTATGATGGAGCTGAGCTCACTTTGGCATCTCTGGTAAAGTTGTCATCATTTCCATCCATTACCTATTGCTTGAATATGCACTTATATATGGTAGTTCCTTATATGGGGATTGTTCTTTTGGTGAACACAGTTCTCTGTGTAATTGGGATGCAGCTCTTAAGGTCGATGTTTTTTATGATGGAATGTGCGATTGGGACTTGATCTTTCCTTCCGTTTGTTTTTCACTCGTTGCTGACGTTATAGAGGCTGCTCCCTTTTTCTTTGAGTGGATTCTATATCTCTTGTGTTGAGCATTCATTACTTTTATGGCTTTGATCTTTTCCCTTTCCACAAAATCTTCAATCCATTTTTTTCCTACAATTTCAACCCCCTTTTTTCACTCAGATTAGGACTTTAGTTGCAATTCTGATAATATCATTGGTCTTGTTCATCAACTACAACTACCTTTCCACTTATAGGGATCAGTTGAAGTAACCATAGATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATTTTGAGTCTAACTCAGAGAGTTTAGATTGCATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATCGATGAACAATTGGCATTGCTATCAGTTTAGCAAATATAAGATCAAGCCTGAGATTAAGAGGGGATGAAAAAATCTGCACGCTTTTTTGATGAATTTGACTGTTTCTATTGTTACAGAAAAATCCTAAAACAATGTGATGTTTTTAGTGGAATTATGGGATTAGGAAATACGATTTGTTTCTCTTATGGGTAATCTTACACACAATATATTGTCGCTTTCTTTATTAAGTTTGAAGAGTGCATGCAAGTAGGAGGACCTTGAAAAGATTATGGAAGAAACCTGGAGGCTTGAGAGAGTAATTGTTTTTAGGGGAAAGTATCTCAAGTTTTTGAAGAATGTGGTTTGGCTACCCAAGTTTTAAAAGTCTACTTTTTTTTTTTTAGTTTCAGATTTATGAGAATAGACCCGTTTTGGTCCTCCAATTTTCAAAAAGTACATTTTAAAAATTCAATGACCAAGTGGATCTATTTTTATAAATATAGGGACTAAATGCACATGTTCAT

mRNA sequence

ATTTAGGGGATGTTACTCCAACACTCTCTCTTTCATCCACGAGAAGCCAAGAATCACAATCGGCTCCCAAGTTCGCCTCTGCTACGCCGTCTACCACCCTCTCTATCCTTCTGTAACCCCTGGATCAGTTGAAGTAACCATAGATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATTTTGAGTCTAACTCAGAGAGTTTAGATTGCATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATCGATGAACAATTGGCATTGCTATCAGTTTAGCAAATATAAGATCAAGCCTGAGATTAAGAGGGGATGAAAAAATCTGCACGCTTTTTTGATGAATTTGACTGTTTCTATTGTTACAGAAAAATCCTAAAACAATGTGATGTTTTTAGTGGAATTATGGGATTAGGAAATACGATTTGTTTCTCTTATGGGTAATCTTACACACAATATATTGTCGCTTTCTTTATTAAGTTTGAAGAGTGCATGCAAGTAGGAGGACCTTGAAAAGATTATGGAAGAAACCTGGAGGCTTGAGAGAGTAATTGTTTTTAGGGGAAAGTATCTCAAGTTTTTGAAGAATGTGGTTTGGCTACCCAAGTTTTAAAAGTCTACTTTTTTTTTTTTAGTTTCAGATTTATGAGAATAGACCCGTTTTGGTCCTCCAATTTTCAAAAAGTACATTTTAAAAATTCAATGACCAAGTGGATCTATTTTTATAAATATAGGGACTAAATGCACATGTTCAT

Coding sequence (CDS)

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATTTTGAGTCTAACTCAGAGAGTTTAGATTGCATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATCGATGAACAATTGGCATTGCTATCAGTTTAG

Protein sequence

MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV

Homology

[Close]

BLAST of Pay0005339 vs. ExPASy Swiss-Prot
Match: Q55A45 (Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum OX=44689 GN=snrpb PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-06
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 28  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGL 87
           K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+
Sbjct: 9   KMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRTLGM 68

Query: 88  ILIPNSCRVSCHVDSTIDEQLAL 110
           ILI     VS  V++   E+  L
Sbjct: 69  ILIRGETVVSMSVEAPPPEEAKL 91

[Close]

BLAST of Pay0005339 vs. ExPASy Swiss-Prot
Match: Q6GQ67 (N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-a PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.9e-05
Identity = 36/99 (36.36%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 3   QESGGSMVQDGSNFESNSESLDCI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNII 62
           +E+G S     S  +S++E  D    K+  LL R M I + DGR  +G F C D+  N+I
Sbjct: 6   EENGCSRQSSPSAGDSDAEPGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVI 65

Query: 63  LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD 101
           L  A E+     S P   E R LGL ++P    VS  V+
Sbjct: 66  LGSAQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of Pay0005339 vs. ExPASy Swiss-Prot
Match: A4IGZ4 (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=8364 GN=naa38 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 35/99 (35.35%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 3   QESGGSMVQDGSNFESNSESLDCI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNII 62
           +E+G S        +S++E+ D    K+  LL R M I + DGR  +G F C D+  N+I
Sbjct: 6   EENGCSRQSSPGAGDSDAEAGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVI 65

Query: 63  LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD 101
           L  A E+     S P   E R LGL ++P    VS  V+
Sbjct: 66  LGSAQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of Pay0005339 vs. ExPASy Swiss-Prot
Match: A2BIG9 (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio OX=7955 GN=naa38 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.4e-05
Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 28  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLI 87
           K+  LL + M I + DGR  +G F C D+  N+IL  A E+  +   S S  E R LGL 
Sbjct: 27  KLENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKS-TDSLSQGEPRVLGLA 86

Query: 88  LIPNSCRVSCHVDS 102
           +IP    VS  V++
Sbjct: 87  MIPGHHVVSIEVET 99

[Close]

BLAST of Pay0005339 vs. ExPASy Swiss-Prot
Match: Q6NU60 (N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-b PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.7e-04
Identity = 28/73 (38.36%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 28  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLI 87
           K+  LL R M I + DGR  +G F C D+  N+IL  A E+      S    E R LGL 
Sbjct: 32  KLESLLNRNMRIQMTDGRSLIGCFLCTDRDCNVILGSAQEFLRP-SDSFRIREPRVLGLA 91

Query: 88  LIPNSCRVSCHVD 101
           ++P    VS  V+
Sbjct: 92  MVPGHHIVSIQVE 103

[Close]

BLAST of Pay0005339 vs. ExPASy TrEMBL
Match: A0A5D3DAS2 (Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00700 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.3e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Pay0005339 vs. ExPASy TrEMBL
Match: A0A1S3BAH4 (uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.3e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Pay0005339 vs. ExPASy TrEMBL
Match: A0A0A0LSZ5 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.6e-53
Identity = 109/112 (97.32%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Pay0005339 vs. ExPASy TrEMBL
Match: A0A6J1EKG3 (uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC111434149 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.7e-50
Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQ G N ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Pay0005339 vs. ExPASy TrEMBL
Match: A0A6J1KMW6 (uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.3e-49
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           M+QESGGSMVQ GSN ESN +SLD +GKVRKLLFRRML+GIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MDQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLLGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTWRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Pay0005339 vs. NCBI nr
Match: XP_008444477.1 (PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo] >KAA0053997.1 Small nuclear ribonucleoprotein family protein isoform 2 [Cucumis melo var. makuwa] >TYK20682.1 Small nuclear ribonucleoprotein family protein isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 8.8e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Pay0005339 vs. NCBI nr
Match: XP_011649337.1 (uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical protein Csa_014187 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 5.4e-53
Identity = 109/112 (97.32%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Pay0005339 vs. NCBI nr
Match: XP_023520042.1 (uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 Small nuclear ribonucleoprotein-associated protein B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQ GSN ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Pay0005339 vs. NCBI nr
Match: XP_022927243.1 (uncharacterized protein LOC111434149 [Cucurbita moschata])

HSP 1 Score: 207.6 bits (527), Expect = 5.6e-50
Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQ G N ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Pay0005339 vs. NCBI nr
Match: XP_038893823.1 (uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893824.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893825.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893826.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893827.1 uncharacterized protein LOC120082644 [Benincasa hispida])

HSP 1 Score: 207.2 bits (526), Expect = 7.3e-50
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQES GSMVQDGSN ESN ESLD +GKVR+LLFRRMLIGIKDGRFFLG+FYCIDKQGNI
Sbjct: 1   MEQESEGSMVQDGSNVESNPESLDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTR SSPSPMEQRCLGLILIPNSCRVSCH+DSTIDE+LALLSV
Sbjct: 61  ILQDAVEYRSTRHSSPSPMEQRCLGLILIPNSCRVSCHIDSTIDEKLALLSV 112

[Close]

BLAST of Pay0005339 vs. TAIR 10
Match: AT4G18372.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 154.8 bits (390), Expect = 4.0e-38
Identity = 71/95 (74.74%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 18  SNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPS 77
           S     D I ++RKLLFR+ML+GIKDGRFFLGNF+CIDKQGNIILQD VEYRS RRSSPS
Sbjct: 16  SEGSDFDPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPS 75

Query: 78  PMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           P EQRCLG+ILIP+SCR SCHVD +IDEQL+L+ +
Sbjct: 76  PTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQL 110

The following BLAST results are available for this feature:

BLAST of Pay0005339 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55A45	3.0e-06	34.94	Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum...	[more]
Q6GQ67	1.9e-05	36.36	N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]
A4IGZ4	3.3e-05	35.35	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=83...	[more]
A2BIG9	7.4e-05	39.19	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio OX=7955 GN=n...	[more]
Q6NU60	3.7e-04	38.36	N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]

BLAST of Pay0005339 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DAS2	4.3e-56	100.00	Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. ma...	[more]
A0A1S3BAH4	4.3e-56	100.00	uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=...	[more]
A0A0A0LSZ5	2.6e-53	97.32	Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=...	[more]
A0A6J1EKG3	2.7e-50	91.96	uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC1114341...	[more]
A0A6J1KMW6	2.3e-49	90.18	uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614...	[more]

BLAST of Pay0005339 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444477.1	8.8e-56	100.00	PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo] >KAA0053997.1 Sma...	[more]
XP_011649337.1	5.4e-53	97.32	uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical ...	[more]
XP_023520042.1	1.5e-50	92.86	uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 ...	[more]
XP_022927243.1	5.6e-50	91.96	uncharacterized protein LOC111434149 [Cucurbita moschata]	[more]
XP_038893823.1	7.3e-50	91.07	uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893824.1 unchara...	[more]

BLAST of Pay0005339 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18372.1	4.0e-38	74.74	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.100		coord: 27..104 e-value: 3.9E-17 score: 63.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 20..111
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 30..89 e-value: 1.3E-7 score: 31.2
IPR034110	LSM domain containing 1	PANTHER	PTHR10701:SF5	FI06540P	coord: 20..111
IPR034110	LSM domain containing 1	CDD	cd06168	LSMD1	coord: 28..100 e-value: 1.02824E-26 score: 92.2349
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 25..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0005339.1	Pay0005339.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031417	NatC complex