Pay0005288 (gene) Melon (Payzawat) v1

Overview


Name	Pay0005288
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr11: 32354546 .. 32355295 (+)
RNA-Seq Expression	Pay0005288
Synteny	Pay0005288

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTTGTCAAAGGTAGACAAATTACAGAGGCCATTCTTATTGCAAATGAAGCCTTAGACTTCTGGAGAAACAAAAAAGAAAGAGGCTTTGTGATAAAACTGGACATTGAAAAGGCCTTCGATAAGTTAAACTGGCGCTTCATAGACTTTATGCTCATGAAAAAGAACTACTCCCCGAAGTGGAGAAATATGATTGCCAGCTGCATCTCCAGTGTCTAATACTCAATTCTTATTAATGGAAGACCAAGAGGCAGAATCAAACCTACTAGAGGAATCCGACAGGGTGACCCCCTTTCCCCCTTCATCTTCGTTTTGGCTATGGACTATCTCAGCCGTCTTTTGATCAACTTAGCAGAAAAAGGAAAAATCAATGGAGTAAACTTCGGTCCTAACCTTAATCTTACCCACATCCTTTTTGCGGATGACATCCTCATCTTTGTAGAGGATAAGGAGGACTACGTATCAAATCTCAAAATGATCCTGCATCTTTTTGAATCTGCTTCGGACCTTAACATCAATCTGTCCAAGTCTACTATCTTCCCCATAAACGTCCCGACAGATCGTGCAAACTCTATAGTGGACAGTTGGGGAATAAGCAAAGGCCAACTCCCGACAACTTACCTCGGCATGCCTTTAGGCGGGAAACCATCCTCTTCTAATTTCTGGGACAATATACTTCAGAAAATTCAGAAAAAATTGAGAAGTTGGAAATACTCTCAGCTATCCAAAGGCGGCAGAATCCTCTGA

mRNA sequence

ATGGCTTTTGTCAAAGGTAGACAAATTACAGAGGCCATTCTTATTGCAAATGAAGCCTTAGACTTCTGGAGAAACAAAAAAGAAAGAGGCTTTGTGATAAAACTGGACATTGAAAAGGCCTTCGATAAGTTAAACTGGCGCTTCATAGACTTTATGCTCATGAAAAAGAACTACTCCCCGAAGTGGAGAAATATGATTGCCAGCTGCATCTCCAGTGAGGACTACGTATCAAATCTCAAAATGATCCTGCATCTTTTTGAATCTGCTTCGGACCTTAACATCAATCTGTCCAAGTCTACTATCTTCCCCATAAACGTCCCGACAGATCGTGCAAACTCTATAGTGGACAGTTGGGGAATAAGCAAAGGCCAACTCCCGACAACTTACCTCGGCATGCCTTTAGGCGGGAAACCATCCTCTTCTAATTTCTGGGACAATATACTTCAGAAAATTCAGAAAAAATTGAGAAGTTGGAAATACTCTCAGCTATCCAAAGGCGGCAGAATCCTCTGA

Coding sequence (CDS)

ATGGCTTTTGTCAAAGGTAGACAAATTACAGAGGCCATTCTTATTGCAAATGAAGCCTTAGACTTCTGGAGAAACAAAAAAGAAAGAGGCTTTGTGATAAAACTGGACATTGAAAAGGCCTTCGATAAGTTAAACTGGCGCTTCATAGACTTTATGCTCATGAAAAAGAACTACTCCCCGAAGTGGAGAAATATGATTGCCAGCTGCATCTCCAGTGAGGACTACGTATCAAATCTCAAAATGATCCTGCATCTTTTTGAATCTGCTTCGGACCTTAACATCAATCTGTCCAAGTCTACTATCTTCCCCATAAACGTCCCGACAGATCGTGCAAACTCTATAGTGGACAGTTGGGGAATAAGCAAAGGCCAACTCCCGACAACTTACCTCGGCATGCCTTTAGGCGGGAAACCATCCTCTTCTAATTTCTGGGACAATATACTTCAGAAAATTCAGAAAAAATTGAGAAGTTGGAAATACTCTCAGCTATCCAAAGGCGGCAGAATCCTCTGA

Protein sequence

MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSPKWRNMIASCISSEDYVSNLKMILHLFESASDLNINLSKSTIFPINVPTDRANSIVDSWGISKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLRSWKYSQLSKGGRIL

Homology

[Close]

BLAST of Pay0005288 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.5e-79
Identity = 167/248 (67.34%), Postives = 167/248 (67.34%), Query Frame = 0


Query: 1   MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP 60
           MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP
Sbjct: 366 MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP 425

Query: 61  KWRNMIASCISS------------------------------------------------ 120
           KWRNMIASCISS                                                
Sbjct: 426 KWRNMIASCISSVQYSILINGRPRGRIKPTRGIRQGDPLSPFIFVLAMDYLSHLLINLAE 485

Query: 121 -------------------------------EDYVSNLKMILHLFESASDLNINLSKSTI 170
                                          EDYVSNLKMILHLFESAS LNINLSKSTI
Sbjct: 486 KGKINGVNFGPNLNLTHILFADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTI 545

[Close]

BLAST of Pay0005288 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.5e-79
Identity = 167/248 (67.34%), Postives = 167/248 (67.34%), Query Frame = 0


Query: 1   MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP 60
           MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP
Sbjct: 272 MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP 331

Query: 61  KWRNMIASCISS------------------------------------------------ 120
           KWRNMIASCISS                                                
Sbjct: 332 KWRNMIASCISSVQYSILINGRPRGRIKPTRGIRQGDPLSSFIFVLAMDYLSHLLINLAE 391

Query: 121 -------------------------------EDYVSNLKMILHLFESASDLNINLSKSTI 170
                                          EDYVSNLKMILHLFESAS LNINLSKSTI
Sbjct: 392 KGKINGVNFGPNLNLTHILFADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTI 451

[Close]

BLAST of Pay0005288 vs. ExPASy TrEMBL
Match: A0A5D3BJP3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005410 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.5e-73
Identity = 157/248 (63.31%), Postives = 160/248 (64.52%), Query Frame = 0


Query: 1   MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP 60
           MAFVKGRQITEAILIANEALD WRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYS 
Sbjct: 474 MAFVKGRQITEAILIANEALDLWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSQ 533

Query: 61  KWRNMIASCISS------------------------------------------------ 120
           KWR MIASCISS                                                
Sbjct: 534 KWRKMIASCISSVQYSILINGRPRGRIKPSRGIRQGDPLSPFIFVLAMDYLSRLLNNLAD 593

Query: 121 -------------------------------EDYVSNLKMILHLFESASDLNINLSKSTI 170
                                          +DYVSNLKMILHLFESAS LNINLSKSTI
Sbjct: 594 KGKINGVNFGPNLNLTHILFADDILIFVEDKDDYVSNLKMILHLFESASGLNINLSKSTI 653

[Close]

BLAST of Pay0005288 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.6e-73
Identity = 155/248 (62.50%), Postives = 162/248 (65.32%), Query Frame = 0


Query: 1   MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP 60
           MAFVKGRQITEAILIANEALDFWR+KKERGFVIKLDIEKAFDKLNWRFIDF+LMKKNYS 
Sbjct: 474 MAFVKGRQITEAILIANEALDFWRSKKERGFVIKLDIEKAFDKLNWRFIDFVLMKKNYSQ 533

Query: 61  KWRNMIASCISS------------------------------------------------ 120
           KWR MIASCISS                                                
Sbjct: 534 KWRKMIASCISSVQYSILINGRPRGRIKPSRGIRQGDPLSPFIFVLAMDYLSRLLNNLAD 593

Query: 121 -------------------------------EDYVSNLKMILHLFESASDLNINLSKSTI 170
                                          +DYVSNLKMILHLFESAS LNINLSKSTI
Sbjct: 594 KRKINGVKFSPNLNLTHILFADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTI 653

[Close]

BLAST of Pay0005288 vs. ExPASy TrEMBL
Match: A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.5e-48
Identity = 114/246 (46.34%), Postives = 131/246 (53.25%), Query Frame = 0


Query: 1   MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP 60
           MAFVKGRQI +AIL+ANEA+D+WR KK +GFVIKLDIEKAFDKLNWRFIDFMLMKK Y  
Sbjct: 388 MAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNWRFIDFMLMKKGYPF 447

Query: 61  KWRNMIASCISSEDY--------------------------------------------- 120
           KWRN I +CISS  Y                                             
Sbjct: 448 KWRNWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVLAMDYMSRLLNSVGE 507

Query: 121 --------------------------------VSNLKMILHLFESASDLNINLSKSTIFP 170
                                           + NLK I++LF+ AS L+INL+KSTI P
Sbjct: 508 KIKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISP 567

[Close]

BLAST of Pay0005288 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 304.7 bits (779), Expect = 5.1e-79
Identity = 167/248 (67.34%), Postives = 167/248 (67.34%), Query Frame = 0


Query: 1   MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP 60
           MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP
Sbjct: 272 MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP 331

Query: 61  KWRNMIASCISS------------------------------------------------ 120
           KWRNMIASCISS                                                
Sbjct: 332 KWRNMIASCISSVQYSILINGRPRGRIKPTRGIRQGDPLSSFIFVLAMDYLSHLLINLAE 391

Query: 121 -------------------------------EDYVSNLKMILHLFESASDLNINLSKSTI 170
                                          EDYVSNLKMILHLFESAS LNINLSKSTI
Sbjct: 392 KGKINGVNFGPNLNLTHILFADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTI 451

[Close]

BLAST of Pay0005288 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 304.7 bits (779), Expect = 5.1e-79
Identity = 167/248 (67.34%), Postives = 167/248 (67.34%), Query Frame = 0


Query: 1   MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP 60
           MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP
Sbjct: 366 MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP 425

Query: 61  KWRNMIASCISS------------------------------------------------ 120
           KWRNMIASCISS                                                
Sbjct: 426 KWRNMIASCISSVQYSILINGRPRGRIKPTRGIRQGDPLSPFIFVLAMDYLSHLLINLAE 485

Query: 121 -------------------------------EDYVSNLKMILHLFESASDLNINLSKSTI 170
                                          EDYVSNLKMILHLFESAS LNINLSKSTI
Sbjct: 486 KGKINGVNFGPNLNLTHILFADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTI 545

[Close]

BLAST of Pay0005288 vs. NCBI nr
Match: TYJ99326.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.4 bits (729), Expect = 3.2e-73
Identity = 157/248 (63.31%), Postives = 160/248 (64.52%), Query Frame = 0


Query: 1   MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP 60
           MAFVKGRQITEAILIANEALD WRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYS 
Sbjct: 474 MAFVKGRQITEAILIANEALDLWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSQ 533

Query: 61  KWRNMIASCISS------------------------------------------------ 120
           KWR MIASCISS                                                
Sbjct: 534 KWRKMIASCISSVQYSILINGRPRGRIKPSRGIRQGDPLSPFIFVLAMDYLSRLLNNLAD 593

Query: 121 -------------------------------EDYVSNLKMILHLFESASDLNINLSKSTI 170
                                          +DYVSNLKMILHLFESAS LNINLSKSTI
Sbjct: 594 KGKINGVNFGPNLNLTHILFADDILIFVEDKDDYVSNLKMILHLFESASGLNINLSKSTI 653

[Close]

BLAST of Pay0005288 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 284.6 bits (727), Expect = 5.4e-73
Identity = 155/248 (62.50%), Postives = 162/248 (65.32%), Query Frame = 0


Query: 1   MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP 60
           MAFVKGRQITEAILIANEALDFWR+KKERGFVIKLDIEKAFDKLNWRFIDF+LMKKNYS 
Sbjct: 474 MAFVKGRQITEAILIANEALDFWRSKKERGFVIKLDIEKAFDKLNWRFIDFVLMKKNYSQ 533

Query: 61  KWRNMIASCISS------------------------------------------------ 120
           KWR MIASCISS                                                
Sbjct: 534 KWRKMIASCISSVQYSILINGRPRGRIKPSRGIRQGDPLSPFIFVLAMDYLSRLLNNLAD 593

Query: 121 -------------------------------EDYVSNLKMILHLFESASDLNINLSKSTI 170
                                          +DYVSNLKMILHLFESAS LNINLSKSTI
Sbjct: 594 KRKINGVKFSPNLNLTHILFADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTI 653

[Close]

BLAST of Pay0005288 vs. NCBI nr
Match: XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 1.3e-47
Identity = 114/246 (46.34%), Postives = 131/246 (53.25%), Query Frame = 0


Query: 1   MAFVKGRQITEAILIANEALDFWRNKKERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYSP 60
           MAFVKGRQI +AIL+ANEA+D+WR KK +GFVIKLDIEKAFDKLNWRFIDFMLMKK Y  
Sbjct: 388 MAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNWRFIDFMLMKKGYPF 447

Query: 61  KWRNMIASCISSEDY--------------------------------------------- 120
           KWRN I +CISS  Y                                             
Sbjct: 448 KWRNWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVLAMDYMSRLLNSVGE 507

Query: 121 --------------------------------VSNLKMILHLFESASDLNINLSKSTIFP 170
                                           + NLK I++LF+ AS L+INL+KSTI P
Sbjct: 508 KIKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISP 567

[Close]

BLAST of Pay0005288 vs. TAIR 10
Match: AT4G20520.1 (RNA binding;RNA-directed DNA polymerases )

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-05
Identity = 22/68 (32.35%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 2  AFVKGRQITEAILIANEALDFWRNKK--ERGFVIKLDIEKAFDKLNWRFIDFMLMKKNYS 61
          +F+ GR  T+ I+   EA+   R KK  +   ++KLD+EKA+D++ W +++  L+   + 
Sbjct: 19 SFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDYLEDTLISAGFP 78

Query: 62 PKWRNMIA 68
            W   IA
Sbjct: 79 EVWLPEIA 86

The following BLAST results are available for this feature:

BLAST of Pay0005288 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0005288 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIB8	2.5e-79	67.34	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	2.5e-79	67.34	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BJP3	1.5e-73	63.31	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	2.6e-73	62.50	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DM72	6.5e-48	46.34	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Pay0005288 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044556.1	5.1e-79	67.34	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	5.1e-79	67.34	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYJ99326.1	3.2e-73	63.31	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	5.4e-73	62.50	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
XP_016902461.1	1.3e-47	46.34	PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]	[more]

BLAST of Pay0005288 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20520.1	5.2e-05	32.35	RNA binding;RNA-directed DNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..74 e-value: 1.3E-7 score: 31.4
None	No IPR available	PANTHER	PTHR33116:SF33	OS01G0885550 PROTEIN	coord: 2..162
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 2..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0005288.1	Pay0005288.1	mRNA