Pay0005210 (gene) Melon (Payzawat) v1

Overview


Name	Pay0005210
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	sigma factor binding protein 1, chloroplastic-like
Location	chr10: 173296 .. 174262 (+)
RNA-Seq Expression	Pay0005210
Synteny	Pay0005210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGACATCTGGAAAGAAAGAACCTTCTATACCTTTTCCAATTTTCTCTTTGTTTCGTTTTCATTGGGAATTTTCCTTTTCCCTTAAAATTTCCAACCCAACCCATTTCCAGGAAACCGCCATTTGTTTGTTTCCCAAGAAAATTTCTCCAATCCGTACACCCTTATATATAAATCCCACCACCACCATATATCTTCCACTCCAAAATCACTCAAATTATAAAACCCCTGATTATCTCCATTTAAATTAAAAAGAAAAAAAGGAAAAGAAAAGAGGAGAAAATTCCCGATGAATGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGACGGCGGCGGATTTCAAAGTAGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCCGAGAGATTCATGGAGATGGCATCGGGTGCTAGTGATGGGAATGGACAATCGTGGGCATCGGCGTCGTTCCTAGACCAGCAACTCATGGGCGAGGAGGATGTAGTGGTGGGAGGAAAGGAGGAAGCGGCGTTTGGGGGTGTGAATCCGGCGGATGATTTGGTGTTTCTGCAGAATTTGGATGGGAATTTTGCAGAAATGTTCAATGGGTTTTGGCATGATTCTTCGACGGCACAAACTGAGATGACAGGTTTAAGTGCACTGTTGTAGTTTCGGAGTAGTAGTTCATAGTTTCTCCCATTTTTTTTTTATTTTTTTGGTTTAACTAAAATAATGCGAGGTGGAGTTGTATAGAAAGATGAAACCTTTCCTAGCCTCTTTCTTTGTTCATAGTTTATATTATTTTGAATATAATATATACGAGAATTTTGAGAATTTAATTATAATCAATGTTTTAATTTTTTATGTGTGTAGTGTGTTTGCACTGTTGGGATTCTTTTAATACGATTTTTTTCAGTTTATCGGCG

mRNA sequence

AGGACATCTGGAAAGAAAGAACCTTCTATACCTTTTCCAATTTTCTCTTTGTTTCGTTTTCATTGGGAATTTTCCTTTTCCCTTAAAATTTCCAACCCAACCCATTTCCAGGAAACCGCCATTTGTTTGTTTCCCAAGAAAATTTCTCCAATCCGTACACCCTTATATATAAATCCCACCACCACCATATATCTTCCACTCCAAAATCACTCAAATTATAAAACCCCTGATTATCTCCATTTAAATTAAAAAGAAAAAAAGGAAAAGAAAAGAGGAGAAAATTCCCGATGAATGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGACGGCGGCGGATTTCAAAGTAGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCCGAGAGATTCATGGAGATGGCATCGGGTGCTAGTGATGGGAATGGACAATCGTGGGCATCGGCGTCGTTCCTAGACCAGCAACTCATGGGCGAGGAGGATGTAGTGGTGGGAGGAAAGGAGGAAGCGGCGTTTGGGGGTGTGAATCCGGCGGATGATTTGGTGTTTCTGCAGAATTTGGATGGGAATTTTGCAGAAATGTTCAATGGGTTTTGGCATGATTCTTCGACGGCACAAACTGAGATGACAGGTTTAAGTGCACTGTTGTAGTTTCGGAGTAGTAGTTCATAGTTTCTCCCATTTTTTTTTTATTTTTTTGGTTTAACTAAAATAATGCGAGGTGGAGTTGTATAGAAAGATGAAACCTTTCCTAGCCTCTTTCTTTGTTCATAGTTTATATTATTTTGAATATAATATATACGAGAATTTTGAGAATTTAATTATAATCAATGTTTTAATTTTTTATGTGTGTAGTGTGTTTGCACTGTTGGGATTCTTTTAATACGATTTTTTTCAGTTTATCGGCG

Coding sequence (CDS)

ATGAATGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGACGGCGGCGGATTTCAAAGTAGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCCGAGAGATTCATGGAGATGGCATCGGGTGCTAGTGATGGGAATGGACAATCGTGGGCATCGGCGTCGTTCCTAGACCAGCAACTCATGGGCGAGGAGGATGTAGTGGTGGGAGGAAAGGAGGAAGCGGCGTTTGGGGGTGTGAATCCGGCGGATGATTTGGTGTTTCTGCAGAATTTGGATGGGAATTTTGCAGAAATGTTCAATGGGTTTTGGCATGATTCTTCGACGGCACAAACTGAGATGACAGGTTTAAGTGCACTGTTGTAG

Protein sequence

MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL

Homology

[Close]

BLAST of Pay0005210 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.3e-06
Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 0


Query: 6   KKQAKRSKKSTAAD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGAS 65
           +K  K+ KK+T+ +   KV YIS+PM+V+T ASKFR LVQ+LTGQD+   +   + S +S
Sbjct: 24  RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

Query: 66  DGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMF-NGF 125
           D +  S   A  L  +++ +E    G ++   +  +N A+D+     +   F+  F NGF
Sbjct: 84  DDHNLS-PPAENLAPRVLHQEP--FGERDSDCYEPLN-AEDMFLPDQMSAGFSGFFSNGF 141

[Close]

BLAST of Pay0005210 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.0e-04
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 10 KRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS 51
          KR   +T    KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Sbjct: 27 KRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDA 67

[Close]

BLAST of Pay0005210 vs. ExPASy TrEMBL
Match: A0A5A7SVU6 (Sigma factor binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007920 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.2e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60
           MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN 120
           GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN
Sbjct: 61  GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN 120

Query: 121 GFWHDSSTAQTEMTGLSALL 141
           GFWHDSSTAQTEMTGLSALL
Sbjct: 121 GFWHDSSTAQTEMTGLSALL 140

[Close]

BLAST of Pay0005210 vs. ExPASy TrEMBL
Match: A0A1S4DW56 (sigma factor binding protein 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103489524 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.2e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60
           MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN 120
           GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN
Sbjct: 61  GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN 120

Query: 121 GFWHDSSTAQTEMTGLSALL 141
           GFWHDSSTAQTEMTGLSALL
Sbjct: 121 GFWHDSSTAQTEMTGLSALL 140

[Close]

BLAST of Pay0005210 vs. ExPASy TrEMBL
Match: A0A0A0KTR9 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623915 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.4e-56
Identity = 117/140 (83.57%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60
           M VTGKKQAKRSKKS  A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN 120
           G SDGNG+ WASASF+D Q+MGEEDV+VGGK EA  GGV+P D+L FLQNLDGN+AEM N
Sbjct: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120

Query: 121 GFWHDSSTAQTEMTGLSALL 141
           GFWHDSSTA++EM GLSALL
Sbjct: 121 GFWHDSSTAESEMPGLSALL 140

[Close]

BLAST of Pay0005210 vs. ExPASy TrEMBL
Match: D1MWZ4 (Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=CitSIB PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.2e-42
Identity = 103/146 (70.55%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-A 60
           MNVTGKKQAKRS+KS AADFKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+ A
Sbjct: 1   MNVTGKKQAKRSRKSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAERFMELTA 60

Query: 61  SGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAA-----FGGVNPADDLVFLQNLDGN 120
           S ASD N QS ASA+F D QL+G++D+VV GK E A        + P DDL  L NLD +
Sbjct: 61  SAASDRNLQSSASATFFDYQLLGDDDLVVAGKVETAAYESSVAALPPPDDLAVLHNLDAS 120

Query: 121 FAEMFNGFWHDSSTAQTEMTGLSALL 141
           F  MF+GFW DS TAQ EM GL+ALL
Sbjct: 121 FGGMFHGFWFDSFTAQAEMPGLNALL 146

[Close]

BLAST of Pay0005210 vs. ExPASy TrEMBL
Match: A0A6J1G190 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111449759 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.4e-32
Identity = 95/153 (62.09%), Postives = 114/153 (74.51%), Query Frame = 0


Query: 1   MNVTGKKQAK-RSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM- 60
           M++T KKQ+K RS+KS AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+ 
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  -ASGASDGNG-QSWASAS-FLDQQLMGEED-------VVVGGKEEAAF-GGVNPADDLVF 120
            A+ +SD N  QS  SAS FLD QL+G++D       +V G  E AA+   V P +DLV 
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPPEDLV- 120

Query: 121 LQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL 141
           ++N D +FAEMF  F HDSS+ QTEM G SALL
Sbjct: 121 MENFDASFAEMFQSFLHDSSSTQTEMPGFSALL 152

[Close]

BLAST of Pay0005210 vs. NCBI nr
Match: XP_016900221.1 (PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo] >KAA0034768.1 sigma factor binding protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 270.8 bits (691), Expect = 6.7e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60
           MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN 120
           GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN
Sbjct: 61  GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN 120

Query: 121 GFWHDSSTAQTEMTGLSALL 141
           GFWHDSSTAQTEMTGLSALL
Sbjct: 121 GFWHDSSTAQTEMTGLSALL 140

[Close]

BLAST of Pay0005210 vs. NCBI nr
Match: XP_004142385.1 (uncharacterized protein LOC101217123 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 5.0e-56
Identity = 117/140 (83.57%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60
           M VTGKKQAKRSKKS  A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN 120
           G SDGNG+ WASASF+D Q+MGEEDV+VGGK EA  GGV+P D+L FLQNLDGN+AEM N
Sbjct: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120

Query: 121 GFWHDSSTAQTEMTGLSALL 141
           GFWHDSSTA++EM GLSALL
Sbjct: 121 GFWHDSSTAESEMPGLSALL 140

[Close]

BLAST of Pay0005210 vs. NCBI nr
Match: KAE8648870.1 (hypothetical protein Csa_007950 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 5.1e-53
Identity = 111/133 (83.46%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60
           M VTGKKQAKRSKKS  A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN 120
           G SDGNG+ WASASF+D Q+MGEEDV+VGGK EA  GGV+P D+L FLQNLDGN+AEM N
Sbjct: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120

Query: 121 GFWHDSSTAQTEM 134
           GFWHDSSTA++EM
Sbjct: 121 GFWHDSSTAESEM 133

[Close]

BLAST of Pay0005210 vs. NCBI nr
Match: XP_038892750.1 (sigma factor binding protein 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 187.2 bits (474), Expect = 9.7e-44
Identity = 106/146 (72.60%), Postives = 117/146 (80.14%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-A 60
           MNVTGKK  KRSKKS AA+FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFME+ A
Sbjct: 1   MNVTGKKHPKRSKKSAAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIA 60

Query: 61  SGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAA-----FGGVNPADDLVFLQNLDGN 120
           S ASD N QS ASA FLD QL+G++D++V GK E A        + P DDL  LQN D +
Sbjct: 61  SAASDRNLQSSASAPFLDYQLLGDDDLLVSGKVETAAYESSVAALPPLDDLAVLQNFDAS 120

Query: 121 FAEMFNGFWHDSSTAQTEMTGLSALL 141
           FAEMF+GFW+DSSTAQT M GLSALL
Sbjct: 121 FAEMFHGFWYDSSTAQTMMPGLSALL 146

[Close]

BLAST of Pay0005210 vs. NCBI nr
Match: BAI52954.1 (sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-42
Identity = 103/146 (70.55%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-A 60
           MNVTGKKQAKRS+KS AADFKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+ A
Sbjct: 1   MNVTGKKQAKRSRKSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAERFMELTA 60

Query: 61  SGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAA-----FGGVNPADDLVFLQNLDGN 120
           S ASD N QS ASA+F D QL+G++D+VV GK E A        + P DDL  L NLD +
Sbjct: 61  SAASDRNLQSSASATFFDYQLLGDDDLVVAGKVETAAYESSVAALPPPDDLAVLHNLDAS 120

Query: 121 FAEMFNGFWHDSSTAQTEMTGLSALL 141
           F  MF+GFW DS TAQ EM GL+ALL
Sbjct: 121 FGGMFHGFWFDSFTAQAEMPGLNALL 146

[Close]

BLAST of Pay0005210 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 51.6 bits (122), Expect = 5.9e-07
Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 0


Query: 6   KKQAKRSKKSTAAD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGAS 65
           +K  K+ KK+T+ +   KV YIS+PM+V+T ASKFR LVQ+LTGQD+   +   + S +S
Sbjct: 24  RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

Query: 66  DGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMF-NGF 125
           D +  S   A  L  +++ +E    G ++   +  +N A+D+     +   F+  F NGF
Sbjct: 84  DDHNLS-PPAENLAPRVLHQEP--FGERDSDCYEPLN-AEDMFLPDQMSAGFSGFFSNGF 141

[Close]

BLAST of Pay0005210 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 45.4 bits (106), Expect = 4.2e-05
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 10 KRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS 51
          KR   +T    KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Sbjct: 27 KRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDA 67

The following BLAST results are available for this feature:

BLAST of Pay0005210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	8.3e-06	35.25	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	6.0e-04	58.54	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Pay0005210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVU6	3.2e-69	100.00	Sigma factor binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S4DW56	3.2e-69	100.00	sigma factor binding protein 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0KTR9	2.4e-56	83.57	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623915 PE=4 SV=...	[more]
D1MWZ4	1.2e-42	70.55	Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN...	[more]
A0A6J1G190	5.4e-32	62.09	sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of Pay0005210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900221.1	6.7e-69	100.00	PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo] >KA...	[more]
XP_004142385.1	5.0e-56	83.57	uncharacterized protein LOC101217123 [Cucumis sativus]	[more]
KAE8648870.1	5.1e-53	83.46	hypothetical protein Csa_007950 [Cucumis sativus]	[more]
XP_038892750.1	9.7e-44	72.60	sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]	[more]
BAI52954.1	2.4e-42	70.55	sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris]	[more]

BLAST of Pay0005210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	5.9e-07	35.25	sigma factor binding protein 1	[more]
AT2G41180.1	4.2e-05	58.54	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 25..51 e-value: 4.5E-12 score: 45.2
None	No IPR available	PANTHER	PTHR33624:SF14	OS07G0687400 PROTEIN	coord: 2..99
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 2..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0005210.1	Pay0005210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity