Pay0005153 (gene) Melon (Payzawat) v1

Overview


Name	Pay0005153
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	arabinogalactan peptide 13-like
Location	chr02: 3053176 .. 3053666 (+)
RNA-Seq Expression	Pay0005153
Synteny	Pay0005153

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCATTTTCAAAAAAAAGAAAAGAAAAGAAAAACAAAGAGAAACCCATTTGAAAAAAAGAAAAAAAAAAGTCCTCAACTTTCAAGGATTTTTTCATCAAAATGGAAGCAGCAAACAAGTTTCTAATGATAACAATGATGGTGGTTGTTGTAATGGTCATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACGTTAATGGCTTCTTTTGTTCCTCTTCTTTTTGGATTGTTTTTCATCTAATAATTTTCTTCCCCTTTCCTCTTTTTTCTTTTCTTTCAATTTACCTATGAATATATATATATATATATAAATGTGTGTGTGTGTGTGTGTGTTTTTCTTTATTTAGGGGATGATGATTGAATTTGTTTGGGTGTGAGATTTGGGATTATTATTGATTTTATGTATATCTTTCCATATTAATTTAATGTTATGTTGTTATTCT

mRNA sequence

ACCATTTTCAAAAAAAAGAAAAGAAAAGAAAAACAAAGAGAAACCCATTTGAAAAAAAGAAAAAAAAAAGTCCTCAACTTTCAAGGATTTTTTCATCAAAATGGAAGCAGCAAACAAGTTTCTAATGATAACAATGATGGTGGTTGTTGTAATGGTCATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACGTTAATGGCTTCTTTTGTTCCTCTTCTTTTTGGATTGTTTTTCATCTAATAATTTTCTTCCCCTTTCCTCTTTTTTCTTTTCTTTCAATTTACCTATGAATATATATATATATATATAAATGTGTGTGTGTGTGTGTGTGTTTTTCTTTATTTAGGGGATGATGATTGAATTTGTTTGGGTGTGAGATTTGGGATTATTATTGATTTTATGTATATCTTTCCATATTAATTTAATGTTATGTTGTTATTCT

Coding sequence (CDS)

ATGGAAGCAGCAAACAAGTTTCTAATGATAACAATGATGGTGGTTGTTGTAATGGTCATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACGTTAATGGCTTCTTTTGTTCCTCTTCTTTTTGGATTGTTTTTCATCTAA

Protein sequence

MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFFI

Homology

[Close]

BLAST of Pay0005153 vs. ExPASy TrEMBL
Match: A0A0A0LWU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1  MEAANK---FLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLF 60
          MEAA K    LM+TMMVVV++ ISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL+F
Sbjct: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF 60

Query: 61 GLFFI 63
          G FFI
Sbjct: 61 GFFFI 65

[Close]

BLAST of Pay0005153 vs. ExPASy TrEMBL
Match: A0A6J1JCI6 (arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111485538 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 12 MMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 61
          M+ +VV  ++ SS IVAAQEAPAPSPASDA LS+PTLMAS  PL  G F
Sbjct: 10 MLAMVVGAMALSSTIVAAQEAPAPSPASDAPLSLPTLMASLAPLALGFF 58

[Close]

BLAST of Pay0005153 vs. NCBI nr
Match: XP_011660059.1 (arabinogalactan protein 13 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 3.0e-13
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1  MEAANK---FLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLF 60
          MEAA K    LM+TMMVVV++ ISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL+F
Sbjct: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF 60

Query: 61 GLFFI 63
          G FFI
Sbjct: 61 GFFFI 65

[Close]

BLAST of Pay0005153 vs. NCBI nr
Match: KAE8653471.1 (hypothetical protein Csa_007150 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-10
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  MEAANK---FLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 56
          MEAA K    LM+TMMVVV++ ISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL
Sbjct: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 58

[Close]

BLAST of Pay0005153 vs. NCBI nr
Match: XP_038879727.1 (arabinogalactan protein 13-like [Benincasa hispida])

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 1  MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 60
          MEA     ++ M++VVV++  SSS+IVAAQEAPAPSPASDA +S+PTLMAS  PL+ G F
Sbjct: 1  MEAMKSQALMMMIMVVVLMAFSSSSIVAAQEAPAPSPASDAPISLPTLMASLAPLVLGFF 60

[Close]

BLAST of Pay0005153 vs. NCBI nr
Match: KAG7023913.1 (Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.0 bits (136), Expect = 6.7e-05
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 12 MMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 61
          M+ +VV  ++ SS IVAAQEAPAPSPASDASLS+PTLMAS  PL  G F
Sbjct: 10 MLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFF 58

[Close]

BLAST of Pay0005153 vs. NCBI nr
Match: XP_022988237.1 (arabinogalactan peptide 13-like [Cucurbita maxima])

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 12 MMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 61
          M+ +VV  ++ SS IVAAQEAPAPSPASDA LS+PTLMAS  PL  G F
Sbjct: 10 MLAMVVGAMALSSTIVAAQEAPAPSPASDAPLSLPTLMASLAPLALGFF 58

[Close]

BLAST of Pay0005153 vs. TAIR 10
Match: AT5G56540.1 (arabinogalactan protein 14 )

HSP 1 Score: 40.0 bits (92), Expect = 7.9e-04
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 4  ANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFF 62
          A K  +  +++V V+  S+    VAA +APAPSP SDAS  IPT  AS   + FG FF
Sbjct: 3  AMKMKLYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGFFF 60

The following BLAST results are available for this feature:

BLAST of Pay0005153 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0005153 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWU9	1.5e-13	83.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=3 SV=1	[more]
A0A6J1JCI6	1.2e-04	67.35	arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111485538 PE=3...	[more]

BLAST of Pay0005153 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660059.1	3.0e-13	83.08	arabinogalactan protein 13 [Cucumis sativus]	[more]
KAE8653471.1	1.8e-10	84.48	hypothetical protein Csa_007150 [Cucumis sativus]	[more]
XP_038879727.1	2.1e-06	61.67	arabinogalactan protein 13-like [Benincasa hispida]	[more]
KAG7023913.1	6.7e-05	69.39	Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022988237.1	2.5e-04	67.35	arabinogalactan peptide 13-like [Cucurbita maxima]	[more]

BLAST of Pay0005153 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56540.1	7.9e-04	46.55	arabinogalactan protein 14	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039281	Arabinogalactan protein 3/12/13/14/21	PANTHER	PTHR34114	ARABINOGALACTAN PEPTIDE 1	coord: 1..61
None	No IPR available	PANTHER	PTHR34114:SF18	ARABINOGALACTAN PEPTIDE 13-LIKE	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0005153.1	Pay0005153.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane