Pay0004892 (gene) Melon (Payzawat) v1

Overview


Name	Pay0004892
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Integrase
Location	chr06: 23751744 .. 23752198 (+)
RNA-Seq Expression	Pay0004892
Synteny	Pay0004892

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGAATGGTAACATGTTGCAACCCCAACTTCCAAGGTTCAGCGGAAAGAATTTTAATCAATGGAGTATTCAAATGAAAGTGTTATATGGCTCTCAAGAATTGTGGGATATTGTTGAAAGAGGATACACTGAAGTTGAGAATCAGAGTGAGCTCACAAATCAACAACTTGTTGAGTTAAGAGAAAATCGTAAGAAAGACAAAAAGGCTTTATTCTTCATTTATCAAGCTGTTGATGAATTTATTTTCGAGAGAATTTCAACAGCTACTTCTGCAAAGGCGGCTTGGGATATTCTAAGATCTACCTATCAAGGAGAAGATAAGGTAAAGATGATAAGGTTACAAGCTCTCAGATCCGAATTTGATTGCATTAAAATGAAAGAAACTGAAACTATTGAAGAATTTTTCAATCGTATTCTTGTAATTGTCAATAGTTTAAGATCAAATGGTGA

mRNA sequence

ATGGCTTCGAATGGTAACATGTTGCAACCCCAACTTCCAAGGTTCAGCGGAAAGAATTTTAATCAATGGAGTATTCAAATGAAAGTGTTATATGGCTCTCAAGAATTGTGGGATATTGTTGAAAGAGGATACACTGAAGTTGAGAATCAGAGTGAGCTCACAAATCAACAACTTGTTGAGTTAAGAGAAAATCGTAAGAAAGACAAAAAGGCTTTATTCTTCATTTATCAAGCTGTTGATGAATTTATTTTCGAGAGAATTTCAACAGCTACTTCTGCAAAGGCGGCTTGGGATATTCTAAGATCTACCTATCAAGGAGAAGATAAGTTTAAGATCAAATGGTGA

Coding sequence (CDS)

ATGGCTTCGAATGGTAACATGTTGCAACCCCAACTTCCAAGGTTCAGCGGAAAGAATTTTAATCAATGGAGTATTCAAATGAAAGTGTTATATGGCTCTCAAGAATTGTGGGATATTGTTGAAAGAGGATACACTGAAGTTGAGAATCAGAGTGAGCTCACAAATCAACAACTTGTTGAGTTAAGAGAAAATCGTAAGAAAGACAAAAAGGCTTTATTCTTCATTTATCAAGCTGTTGATGAATTTATTTTCGAGAGAATTTCAACAGCTACTTCTGCAAAGGCGGCTTGGGATATTCTAAGATCTACCTATCAAGGAGAAGATAAGTTTAAGATCAAATGGTGA

Protein sequence

MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVELRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKIKW

Homology

[Close]

BLAST of Pay0004892 vs. ExPASy TrEMBL
Match: A0A5A7SXS2 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G001430 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60
           MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELT QQLVE
Sbjct: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTKQQLVE 60

Query: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKIKW 115
           LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKIKW
Sbjct: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKIKW 114

[Close]

BLAST of Pay0004892 vs. ExPASy TrEMBL
Match: A0A1S4E4V0 (uncharacterized protein LOC107992100 OS=Cucumis melo OX=3656 GN=LOC107992100 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60
           MASNGNMLQPQLPRF+GKNFNQWSI+MKVLYGSQELWDIVERGYTEVENQSELTNQQLVE
Sbjct: 1   MASNGNMLQPQLPRFNGKNFNQWSIKMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60

Query: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKIKW 115
           LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKIKW
Sbjct: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKIKW 114

[Close]

BLAST of Pay0004892 vs. ExPASy TrEMBL
Match: A0A5D3CLV1 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold132G00180 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.8e-54
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60
           MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE
Sbjct: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60

Query: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKI 113
           LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDK K+
Sbjct: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKVKM 112

[Close]

BLAST of Pay0004892 vs. ExPASy TrEMBL
Match: A0A5D3BQ81 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00890 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.8e-54
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60
           MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE
Sbjct: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60

Query: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKI 113
           LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDK K+
Sbjct: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKVKM 112

[Close]

BLAST of Pay0004892 vs. ExPASy TrEMBL
Match: A0A5D3E3T2 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00030 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.8e-54
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60
           MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE
Sbjct: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60

Query: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKI 113
           LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDK K+
Sbjct: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKVKM 112

[Close]

BLAST of Pay0004892 vs. NCBI nr
Match: KAA0035840.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 228.8 bits (582), Expect = 2.4e-56
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60
           MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELT QQLVE
Sbjct: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTKQQLVE 60

Query: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKIKW 115
           LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKIKW
Sbjct: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKIKW 114

[Close]

BLAST of Pay0004892 vs. NCBI nr
Match: XP_016903256.1 (PREDICTED: uncharacterized protein LOC107992100 [Cucumis melo])

HSP 1 Score: 228.4 bits (581), Expect = 3.1e-56
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60
           MASNGNMLQPQLPRF+GKNFNQWSI+MKVLYGSQELWDIVERGYTEVENQSELTNQQLVE
Sbjct: 1   MASNGNMLQPQLPRFNGKNFNQWSIKMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60

Query: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKIKW 115
           LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKIKW
Sbjct: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKIKW 114

[Close]

BLAST of Pay0004892 vs. NCBI nr
Match: TYJ95504.1 (integrase [Cucumis melo var. makuwa] >TYK08522.1 integrase [Cucumis melo var. makuwa] >TYK12883.1 integrase [Cucumis melo var. makuwa] >TYK20599.1 integrase [Cucumis melo var. makuwa])

HSP 1 Score: 221.5 bits (563), Expect = 3.8e-54
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60
           MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE
Sbjct: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60

Query: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKI 113
           LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDK K+
Sbjct: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKVKM 112

[Close]

BLAST of Pay0004892 vs. NCBI nr
Match: KAA0039947.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 221.5 bits (563), Expect = 3.8e-54
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60
           MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE
Sbjct: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60

Query: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKI 113
           LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDK K+
Sbjct: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKVKM 112

[Close]

BLAST of Pay0004892 vs. NCBI nr
Match: KAA0041660.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 221.5 bits (563), Expect = 3.8e-54
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60
           MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE
Sbjct: 1   MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60

Query: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKFKI 113
           LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDK K+
Sbjct: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKVKM 112

[Close]

BLAST of Pay0004892 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-17
Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 1  MASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60
          MASN   +  Q+P  +  N++ WS++MK + G+ ++W+IVE+G+ E EN+  L+  Q   
Sbjct: 1  MASNN--VPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDG 60

Query: 61 LRENRKKDKKALFFIYQAVDEFIFERISTATSAK 95
          LR++RK+DKKAL  IYQ +DE  FE++  ATSAK
Sbjct: 61 LRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAK 92

The following BLAST results are available for this feature:

BLAST of Pay0004892 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0004892 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SXS2	1.1e-56	99.12	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G001430 PE=...	[more]
A0A1S4E4V0	1.5e-56	98.25	uncharacterized protein LOC107992100 OS=Cucumis melo OX=3656 GN=LOC107992100 PE=...	[more]
A0A5D3CLV1	1.8e-54	98.21	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold132G00180 PE=4...	[more]
A0A5D3BQ81	1.8e-54	98.21	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00890 PE=4...	[more]
A0A5D3E3T2	1.8e-54	98.21	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00030 PE=4...	[more]

BLAST of Pay0004892 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035840.1	2.4e-56	99.12	integrase [Cucumis melo var. makuwa]	[more]
XP_016903256.1	3.1e-56	98.25	PREDICTED: uncharacterized protein LOC107992100 [Cucumis melo]	[more]
TYJ95504.1	3.8e-54	98.21	integrase [Cucumis melo var. makuwa] >TYK08522.1 integrase [Cucumis melo var. ma...	[more]
KAA0039947.1	3.8e-54	98.21	integrase [Cucumis melo var. makuwa]	[more]
KAA0041660.1	3.8e-54	98.21	integrase [Cucumis melo var. makuwa]	[more]

BLAST of Pay0004892 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48720.1	1.4e-17	45.74	unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 44..64
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 65..109 e-value: 1.6E-7 score: 31.2
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 14..111
None	No IPR available	PANTHER	PTHR37610:SF17	ZINC FINGER, CCHC-TYPE, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 14..111
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 15..41 e-value: 1.1E-6 score: 28.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0004892.1	Pay0004892.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006397	mRNA processing
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0008270	zinc ion binding