Pay0004745 (gene) Melon (Payzawat) v1

Overview


Name	Pay0004745
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Gag/pol protein
Location	chr02: 11251835 .. 11252359 (-)
RNA-Seq Expression	Pay0004745
Synteny	Pay0004745

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAACTCAATAGTACAACTCTTAGCTTTTGAAAAATGTGACGGCGACAATTATGTGACTTGGAACTCAAACCTAAATATCATATTAGTCATAAATGATTTAAGGTTTTTCTTAACTGAGGAACGTCCTCAAGCCCCAACCTCAAATGCTAATCAAAATGTTCGGGAAGCATATTATCGTTGGGTTAAGGCCAATGAAAAGGCATGTGTCTATATTCTTGCTAGCATGTCTGATGTTTTGGCAAGGAAACATGGATCCTTAGCCACGACTAAAGAGATTATGGATTCATTGAGGGAGATGTTTGGTCAATCTTTATGGTCCTTCAGAAACGAAGCAATTAAGTACATTTACACCAAGCAAATGAAGGAAGGGACCTCTGTTAGAGAACATGTCATAGACATGATGAAGCACTTCAATATCGCTGAAGTAATTGTCGATCCCATCGATGAGGCAAATCAGGTGAGTTTTATTTTACAATCTCTTTGGAAGAGTTTTGTACCGTTTCAGAGAACGCGCCTCTGA

mRNA sequence

ATGAATAACTCAATAGTACAACTCTTAGCTTTTGAAAAATGTGACGGCGACAATTATGTGACTTGGAACTCAAACCTAAATATCATATTAGTCATAAATGATTTAAGGTTTTTCTTAACTGAGGAACGTCCTCAAGCCCCAACCTCAAATGCTAATCAAAATGTTCGGGAAGCATATTATCGTTGGGTTAAGGCCAATGAAAAGGCATGTGTCTATATTCTTGCTAGCATGTCTGATGTTTTGGCAAGGAAACATGGATCCTTAGCCACGACTAAAGAGATTATGGATTCATTGAGGGAGATGTTTGGTCAATCTTTATGGTCCTTCAGAAACGAAGCAATTAAGTACATTTACACCAAGCAAATGAAGGAAGGGACCTCTGTTAGAGAACATGTCATAGACATGATGAAGCACTTCAATATCGCTGAAGTAATTGTCGATCCCATCGATGAGGCAAATCAGGTGAGTTTTATTTTACAATCTCTTTGGAAGAGTTTTGTACCGTTTCAGAGAACGCGCCTCTGA

Coding sequence (CDS)

ATGAATAACTCAATAGTACAACTCTTAGCTTTTGAAAAATGTGACGGCGACAATTATGTGACTTGGAACTCAAACCTAAATATCATATTAGTCATAAATGATTTAAGGTTTTTCTTAACTGAGGAACGTCCTCAAGCCCCAACCTCAAATGCTAATCAAAATGTTCGGGAAGCATATTATCGTTGGGTTAAGGCCAATGAAAAGGCATGTGTCTATATTCTTGCTAGCATGTCTGATGTTTTGGCAAGGAAACATGGATCCTTAGCCACGACTAAAGAGATTATGGATTCATTGAGGGAGATGTTTGGTCAATCTTTATGGTCCTTCAGAAACGAAGCAATTAAGTACATTTACACCAAGCAAATGAAGGAAGGGACCTCTGTTAGAGAACATGTCATAGACATGATGAAGCACTTCAATATCGCTGAAGTAATTGTCGATCCCATCGATGAGGCAAATCAGGTGAGTTTTATTTTACAATCTCTTTGGAAGAGTTTTGTACCGTTTCAGAGAACGCGCCTCTGA

Protein sequence

MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYYRWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTKQMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQRTRL

Homology

[Close]

BLAST of Pay0004745 vs. ExPASy TrEMBL
Match: A0A1S3BA86 (uncharacterized protein LOC103487476 OS=Cucumis melo OX=3656 GN=LOC103487476 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.0e-93
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYY 60
           MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYY
Sbjct: 1   MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYY 60

Query: 61  RWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTK 120
           RWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTK
Sbjct: 61  RWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTK 120

Query: 121 QMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQRTRL 175
           QMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQRTRL
Sbjct: 121 QMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQRTRL 174

[Close]

BLAST of Pay0004745 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.4e-66
Identity = 133/170 (78.24%), Postives = 145/170 (85.29%), Query Frame = 0


Query: 1   MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYY 60
           MN SIVQLLA EK +GDNY  W SNLN ILV++DLRF LTEE PQAP  NAN+ VREAY 
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTK 120
           RWVKAN+KA VYILASM+DVLA+KH S+AT K IMDSLREMFGQ  WS R+EAIK+IYTK
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTK 120

Query: 121 QMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQ 171
           +MKEGTSVREHV+DMM HFNIAEV   PIDEANQVSFILQSL KSFVPFQ
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQ 170

[Close]

BLAST of Pay0004745 vs. ExPASy TrEMBL
Match: A0A5D3BSI8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00910 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.6e-65
Identity = 129/170 (75.88%), Postives = 146/170 (85.88%), Query Frame = 0


Query: 1   MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYY 60
           MN+SI+QLLA EK +GDNYVTW SNLN ILV++DLRF LTE+ PQ PTSN N+  R+AY 
Sbjct: 1   MNSSILQLLASEKLNGDNYVTWKSNLNTILVVDDLRFVLTEKCPQTPTSNVNRASRKAYD 60

Query: 61  RWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTK 120
           RW+KANEKACVYILASMS VLA+KH SLATTKE+MDSL+ MFGQ  WS R+EAIKYIYTK
Sbjct: 61  RWIKANEKACVYILASMSYVLAKKHESLATTKEVMDSLKGMFGQPEWSLRHEAIKYIYTK 120

Query: 121 QMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQ 171
           +MKEGTSVRE V+DMM HFNIAEV    IDEANQVSFIL+SL KSF+PFQ
Sbjct: 121 RMKEGTSVRERVLDMMMHFNIAEVNGSAIDEANQVSFILESLSKSFIPFQ 170

[Close]

BLAST of Pay0004745 vs. ExPASy TrEMBL
Match: A0A5A7T0E9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00680 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.0e-64
Identity = 129/170 (75.88%), Postives = 145/170 (85.29%), Query Frame = 0


Query: 1   MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYY 60
           MN+SIVQLLA +K +GDNY TW SNLN ILV++DLRF LTEE PQ PTSNAN+  REAY 
Sbjct: 1   MNSSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYD 60

Query: 61  RWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTK 120
           RW+KANEKA VYILASMSDVLA+KH  LATTKEI+DSL+ MFGQ  WS R+EAIKYIYTK
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHECLATTKEIVDSLKGMFGQPEWSLRHEAIKYIYTK 120

Query: 121 QMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQ 171
           +MK+GTSVREHV+DMM HFNI EV    IDEANQVSFIL+SL KSF+PFQ
Sbjct: 121 RMKKGTSVREHVLDMMMHFNITEVNGGAIDEANQVSFILESLLKSFIPFQ 170

[Close]

BLAST of Pay0004745 vs. ExPASy TrEMBL
Match: A0A5D3BF11 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00970 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 8.7e-64
Identity = 126/170 (74.12%), Postives = 143/170 (84.12%), Query Frame = 0


Query: 1   MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYY 60
           MN+SIVQLLAFEK +GDNY  W SNLN ILV++DLRF LTEE PQ P+SNA+Q  R+AY 
Sbjct: 1   MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPQTPSSNASQTSRKAYD 60

Query: 61  RWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTK 120
           RW+KANEKACVYILASMSDVLA+KH SLAT KEIMDSL+ MFGQ  WS R+E IKYIY K
Sbjct: 61  RWIKANEKACVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHETIKYIYIK 120

Query: 121 QMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQ 171
           +MKEGTS++EHV+DMM HFNI EV    IDEANQVSFIL+SL KSF+ FQ
Sbjct: 121 RMKEGTSIKEHVLDMMMHFNIFEVNGGAIDEANQVSFILESLPKSFILFQ 170

[Close]

BLAST of Pay0004745 vs. NCBI nr
Match: XP_008444027.1 (PREDICTED: uncharacterized protein LOC103487476 [Cucumis melo])

HSP 1 Score: 352.4 bits (903), Expect = 2.2e-93
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYY 60
           MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYY
Sbjct: 1   MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYY 60

Query: 61  RWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTK 120
           RWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTK
Sbjct: 61  RWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTK 120

Query: 121 QMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQRTRL 175
           QMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQRTRL
Sbjct: 121 QMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQRTRL 174

[Close]

BLAST of Pay0004745 vs. NCBI nr
Match: XP_038891685.1 (uncharacterized protein LOC120081079 [Benincasa hispida])

HSP 1 Score: 261.2 bits (666), Expect = 6.6e-66
Identity = 130/170 (76.47%), Postives = 148/170 (87.06%), Query Frame = 0


Query: 1   MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYY 60
           MN+ I+QLLA EK +GDNY  W SNLN IL+++DLRF L+EE PQAP SNAN+ VREAY 
Sbjct: 1   MNSLIIQLLASEKLNGDNYSAWKSNLNTILIVDDLRFVLSEECPQAPASNANRTVREAYD 60

Query: 61  RWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTK 120
           RWVKANEKACVYILASMSDVLA+KH SLAT KEI+DSLREMFGQ  WS R+EAIK+IYTK
Sbjct: 61  RWVKANEKACVYILASMSDVLAKKHESLATAKEIIDSLREMFGQLSWSLRHEAIKHIYTK 120

Query: 121 QMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQ 171
           +MKEGTSVREHV+DMM +FNIA+V   PIDEANQVSFILQSL KSF+PF+
Sbjct: 121 RMKEGTSVREHVLDMMMYFNIAKVNGGPIDEANQVSFILQSLPKSFIPFE 170

[Close]

BLAST of Pay0004745 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-65
Identity = 133/170 (78.24%), Postives = 145/170 (85.29%), Query Frame = 0


Query: 1   MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYY 60
           MN SIVQLLA EK +GDNY  W SNLN ILV++DLRF LTEE PQAP  NAN+ VREAY 
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTK 120
           RWVKAN+KA VYILASM+DVLA+KH S+AT K IMDSLREMFGQ  WS R+EAIK+IYTK
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTK 120

Query: 121 QMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQ 171
           +MKEGTSVREHV+DMM HFNIAEV   PIDEANQVSFILQSL KSFVPFQ
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQ 170

[Close]

BLAST of Pay0004745 vs. NCBI nr
Match: KAA0047753.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK02387.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 257.3 bits (656), Expect = 9.5e-65
Identity = 129/170 (75.88%), Postives = 146/170 (85.88%), Query Frame = 0


Query: 1   MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYY 60
           MN+SI+QLLA EK +GDNYVTW SNLN ILV++DLRF LTE+ PQ PTSN N+  R+AY 
Sbjct: 1   MNSSILQLLASEKLNGDNYVTWKSNLNTILVVDDLRFVLTEKCPQTPTSNVNRASRKAYD 60

Query: 61  RWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTK 120
           RW+KANEKACVYILASMS VLA+KH SLATTKE+MDSL+ MFGQ  WS R+EAIKYIYTK
Sbjct: 61  RWIKANEKACVYILASMSYVLAKKHESLATTKEVMDSLKGMFGQPEWSLRHEAIKYIYTK 120

Query: 121 QMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQ 171
           +MKEGTSVRE V+DMM HFNIAEV    IDEANQVSFIL+SL KSF+PFQ
Sbjct: 121 RMKEGTSVRERVLDMMMHFNIAEVNGSAIDEANQVSFILESLSKSFIPFQ 170

[Close]

BLAST of Pay0004745 vs. NCBI nr
Match: KAA0035676.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.1 bits (653), Expect = 2.1e-64
Identity = 129/170 (75.88%), Postives = 145/170 (85.29%), Query Frame = 0


Query: 1   MNNSIVQLLAFEKCDGDNYVTWNSNLNIILVINDLRFFLTEERPQAPTSNANQNVREAYY 60
           MN+SIVQLLA +K +GDNY TW SNLN ILV++DLRF LTEE PQ PTSNAN+  REAY 
Sbjct: 1   MNSSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYD 60

Query: 61  RWVKANEKACVYILASMSDVLARKHGSLATTKEIMDSLREMFGQSLWSFRNEAIKYIYTK 120
           RW+KANEKA VYILASMSDVLA+KH  LATTKEI+DSL+ MFGQ  WS R+EAIKYIYTK
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHECLATTKEIVDSLKGMFGQPEWSLRHEAIKYIYTK 120

Query: 121 QMKEGTSVREHVIDMMKHFNIAEVIVDPIDEANQVSFILQSLWKSFVPFQ 171
           +MK+GTSVREHV+DMM HFNI EV    IDEANQVSFIL+SL KSF+PFQ
Sbjct: 121 RMKKGTSVREHVLDMMMHFNITEVNGGAIDEANQVSFILESLLKSFIPFQ 170

The following BLAST results are available for this feature:

BLAST of Pay0004745 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0004745 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BA86	1.0e-93	100.00	uncharacterized protein LOC103487476 OS=Cucumis melo OX=3656 GN=LOC103487476 PE=...	[more]
E2GK51	5.4e-66	78.24	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5D3BSI8	4.6e-65	75.88	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0091...	[more]
A0A5A7T0E9	1.0e-64	75.88	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0068...	[more]
A0A5D3BF11	8.7e-64	74.12	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G0097...	[more]

BLAST of Pay0004745 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444027.1	2.2e-93	100.00	PREDICTED: uncharacterized protein LOC103487476 [Cucumis melo]	[more]
XP_038891685.1	6.6e-66	76.47	uncharacterized protein LOC120081079 [Benincasa hispida]	[more]
ADJ18449.1	1.1e-65	78.24	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0047753.1	9.5e-65	75.88	gag/pol protein [Cucumis melo var. makuwa] >TYK02387.1 gag/pol protein [Cucumis ...	[more]
KAA0035676.1	2.1e-64	75.88	gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis ...	[more]

BLAST of Pay0004745 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..167 e-value: 3.4E-13 score: 49.5
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 18..170
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 18..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0004745.1	Pay0004745.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding