Pay0004260 (gene) Melon (Payzawat) v1

Overview


Name	Pay0004260
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Glycine-rich RNA-binding protein 3
Location	chr12: 26746222 .. 26748376 (+)
RNA-Seq Expression	Pay0004260
Synteny	Pay0004260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAGGAGAACGAACAAAGGTTTCCTCATTTCCAATTCCATTTCCTTTCCTTTCATTTCCTTTTCTTGTAATGATTTTAGTTTGTATTCTTATGTTTCTGTATCTCTTTGTTCTTAGTTGCGGATTTTGATTGCTTCCGTTTTATGTTTTGATCGTTTTGTCGTTCTGTGTAGAGATGTTCTGTTTGTCTATTTGAGAAATGTAAAGCTTATTATCCTGACTGAACTTACATATGTTCTGATTTTGAGGTTTTATTTCATTCTTCTTTTGTGTTTTATGCGTCTTTTTCGATTTCGAAAGTTAAGAATGATTCCTTTAGTTTTCCAGTATTCTCTTGCTCCAGCTGGGATGTCTTTAATCTGATATGTCTTTCTAGAATGTCTAATCAAAGCGTGGCATGAGAATACAAATTAATTTACGAGTGTAAAGACTAGCTTAAGAATGGTTCCGTTAGTCTTCCAGTATTCTCTTGTTGGCATGTGTCCACAGATTTTGTTTGTTCATCTGTTTGTTATGGATCATACAATAGTACCTAAAACTTTCTTTTTGATTGTGGATCTTTTAAGTCGAAGTTCAAAATATTCGCAGGTGCTGTATTATCTTGTGCAACAAGTTCCCGGACAGAGTTTAATTTTTCTTTCTGGGTAATTCTTTCAGGTCGTTAACATGGCTTTCCTAAGTAAGGTTGGAAAAGTATTTAGTAACAGTTCTGCATCAGGGATCCGATCCCATTTGCAGCCTTCTGTCTTTCAAACTATTAGACTCATGTCGAGTTCGAAAGTTTTTGTTGGAGGTTAGGTTAAATCCAGTTCTTCTGTTCTTTATTACACCTTGGTAATCCTTTAGAACTTTCCCTGACATTCATTGCTTTGTGTACTGCAGGCCTTTCATACAGTACTGATGACCAAAGGCTGACGGAAACGTTCAACAAGTATGGGGAAGTAGTTGAAGGTGTGCATGCAACTTATCTAACTAAGCATTATTGAATTTGAAAGCAAAATTTTATATTTTAGTATTACCACTATTGCTCTTTATTCGTTTCGGGGAAATTGAATGACATTTAAACTTTCTGTAAGAACAGGAACATTCGTGGGGGGTGTCCTCTCTTAGTTGGTGTTGAGTGAAAGACTTTGATTTTTTCTAATGTATATCTATGTTGTCTCAGCGAGAGTGATTACGGATCGTGACTCTGGTAGATCAAGAGGTTTTGGGTTTGTCACTTTCGGTGCCAGTGAAGACGCTTCTAGTGCTATTCAAGCTTTGGATGGACAGGTATAACATTAGCACGGCATAGCTATGAGTGGTTTGGTGACCTTGGTAGTTCTGTTGTGGATTATATCGACTGTTTTCCTTCTTTAATTGTTCATTTTCTGTAATCAGGATCTCGATGGTCGTCGCATTAGATGCAGCTATGCTACTGAAAGATCTAGTGGTGGAGGTGGTTATGGAGGTGGTGGTGGCTATGGCGGTGGTGGCTACAGTGGAGGTGGTGGTGGTTATGGCGGTGGCGGCTATGGCGGCGGTGGCTATGGCGGCGGTAGCAATGGCTTTGGTGACAAGGCTTGAAGGAACTTATCTAATATTTCAACAAATGGGCTTTTTAAGTGTAATGTCTATGCTTCGTTGTACCGCCGGATTATATATTTTGTCTATGTTCTTCAATTTTGAAGATAATTCGTTACGATTCAGAATTGTTAGTGCCGTTGCGTAGGATTTGAGAATTAAATGGACTACCCCTTCCTATTTCTCTTAGCGTAAATGATTCTTAACTCCAATTGGCCTTTGGCTTGATGATCTATTAATTCCTTTTCAATTGACACAAAATCCCCATATTTCGATTGCCCTGAAATTTTTACATGTTCTTAGAATTCTTTCCATTCCACTGCCTTTTTGGCCTACTGTGGAGTACATTTGAAATTGTTAGAATCCATTTTTCTTCATGTTGAGAAATGTCTCGCAAACATCCTGTTTAATACTTCTAAACCGCTCTTGATGGCGTGGTAGGAAAAACACTTCAATCGGATTTGAATGATTGAAGTCTAATTGAAAAAAATGATGCCTTCTTAAATAAATTAAAGTAAAATCCCTCTCTTACAAAA

mRNA sequence

AGAAGAGGAGAACGAACAAAGGTTTCCTCATTTCCAATTCCATTTCCTTTCCTTTCATTTCCTTTTCTTGTAATGATTTTAGTTTGTATTCTTATGTTTCTGTATCTCTTTGTTCTTAGTTGCGGATTTTGATTGCTTCCGTTTTATGTTTTGATCGTTTTGTCGTTCTGTGTAGAGATGTTCTGTTTGTCTATTTGAGAAATGTAAAGCTTATTATCCTGACTGAACTTACATATGTTCTGATTTTGAGGTTTTATTTCATTCTTCTTTTGTGTTTTATGCGTCTTTTTCGATTTCGAAAGTTAAGAATGATTCCTTTAGTTTTCCAGTATTCTCTTGCTCCAGCTGGGATGTCTTTAATCTGATATGTCTTTCTAGAATGTCTAATCAAAGCGTGGCATGAGAATACAAATTAATTTACGAGTGTAAAGACTAGCTTAAGAATGGTTCCGTTAGTCTTCCAGTATTCTCTTGTTGGCATGTGTCCACAGATTTTGTTTGTTCATCTGTTTGTTATGGATCATACAATAGTACCTAAAACTTTCTTTTTGATTGTGGATCTTTTAAGTCGAAGTTCAAAATATTCGCAGGTGCTGTATTATCTTGTGCAACAAGTTCCCGGACAGAGTTTAATTTTTCTTTCTGGGTAATTCTTTCAGGTCGTTAACATGGCTTTCCTAAGTAAGGTTGGAAAAGTATTTAGTAACAGTTCTGCATCAGGGATCCGATCCCATTTGCAGCCTTCTGTCTTTCAAACTATTAGACTCATGTCGAGTTCGAAAGTTTTTGTTGGAGGCCTTTCATACAGTACTGATGACCAAAGGCTGACGGAAACGTTCAACAAGTATGGGGAAGTAGTTGAAGCGAGAGTGATTACGGATCGTGACTCTGGTAGATCAAGAGGTTTTGGGTTTGTCACTTTCGGTGCCAGTGAAGACGCTTCTAGTGCTATTCAAGCTTTGGATGGACAGGATCTCGATGGTCGTCGCATTAGATGCAGCTATGCTACTGAAAGATCTAGTGGTGGAGGTGGTTATGGAGGTGGTGGTGGCTATGGCGGTGGTGGCTACAGTGGAGGTGGTGGTGGTTATGGCGGTGGCGGCTATGGCGGCGGTGGCTATGGCGGCGGTAGCAATGGCTTTGGTGACAAGGCTTGAAGGAACTTATCTAATATTTCAACAAATGGGCTTTTTAAGTGTAATGTCTATGCTTCGTTGTACCGCCGGATTATATATTTTGTCTATGTTCTTCAATTTTGAAGATAATTCGTTACGATTCAGAATTGTTAGTGCCGTTGCGTAGGATTTGAGAATTAAATGGACTACCCCTTCCTATTTCTCTTAGCGTAAATGATTCTTAACTCCAATTGGCCTTTGGCTTGATGATCTATTAATTCCTTTTCAATTGACACAAAATCCCCATATTTCGATTGCCCTGAAATTTTTACATGTTCTTAGAATTCTTTCCATTCCACTGCCTTTTTGGCCTACTGTGGAGTACATTTGAAATTGTTAGAATCCATTTTTCTTCATGTTGAGAAATGTCTCGCAAACATCCTGTTTAATACTTCTAAACCGCTCTTGATGGCGTGGTAGGAAAAACACTTCAATCGGATTTGAATGATTGAAGTCTAATTGAAAAAAATGATGCCTTCTTAAATAAATTAAAGTAAAATCCCTCTCTTACAAAA

Coding sequence (CDS)

ATGGCTTTCCTAAGTAAGGTTGGAAAAGTATTTAGTAACAGTTCTGCATCAGGGATCCGATCCCATTTGCAGCCTTCTGTCTTTCAAACTATTAGACTCATGTCGAGTTCGAAAGTTTTTGTTGGAGGCCTTTCATACAGTACTGATGACCAAAGGCTGACGGAAACGTTCAACAAGTATGGGGAAGTAGTTGAAGCGAGAGTGATTACGGATCGTGACTCTGGTAGATCAAGAGGTTTTGGGTTTGTCACTTTCGGTGCCAGTGAAGACGCTTCTAGTGCTATTCAAGCTTTGGATGGACAGGATCTCGATGGTCGTCGCATTAGATGCAGCTATGCTACTGAAAGATCTAGTGGTGGAGGTGGTTATGGAGGTGGTGGTGGCTATGGCGGTGGTGGCTACAGTGGAGGTGGTGGTGGTTATGGCGGTGGCGGCTATGGCGGCGGTGGCTATGGCGGCGGTAGCAATGGCTTTGGTGACAAGGCTTGA

Protein sequence

MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKYGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGGGGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA

Homology

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BLAST of Pay0004260 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.2e-33
Identity = 101/165 (61.21%), Postives = 125/165 (75.76%), Query Frame = 0


Query: 1   MAFLSKVGKVFSNSSASGIRSHL---QPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETF 60
           MAFLSK G +   ++   + + +    PS+FQ IR MSSSK+F+GG++YS D+  L E F
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 61  NKYGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERS 120
            KYGEVV+ RVI DR++GRSRGFGFVTF +SE ASSAIQALDG+DL GR ++ +YA +R+
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 121 SGGGGYGGGGGYGGGGYSGGGGGYGG--GGYGG-GGYGGGSNGFG 160
           SGGG  GGG G GGGGY GG GGYGG  GGYGG GGYGGG+ G+G
Sbjct: 121 SGGGFGGGGYGGGGGGY-GGSGGYGGGAGGYGGSGGYGGGAGGYG 164

[Close]

BLAST of Pay0004260 vs. ExPASy Swiss-Prot
Match: Q9C909 (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.6e-30
Identity = 104/179 (58.10%), Postives = 128/179 (71.51%), Query Frame = 0


Query: 1   MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY 60
           MAFLSKVG++FS +S+    S    S+ Q+IR MSSSK+FVGG+SYSTD+  L E F+KY
Sbjct: 1   MAFLSKVGRLFSQTSSHVTAS---SSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKY 60

Query: 61  GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSG- 120
           GEVV+A++I DR++GRSRGF FVTF ++E+AS+A+Q LDGQDL GRRIR +YATER SG 
Sbjct: 61  GEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERGSGF 120

Query: 121 --------GGGYGGG-GGYG--GGGYSGGGGGYGG-----GGYGGGGYGGGSNGFGDKA 163
                   GGGYG   GGYG   GGY GG GGYGG     G  GGGG  GG++ +G  A
Sbjct: 121 GGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGGNA 175

[Close]

BLAST of Pay0004260 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-22
Identity = 85/159 (53.46%), Postives = 113/159 (71.07%), Query Frame = 0


Query: 1   MAFLSKVGKVF-SNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNK 60
           MAF +K+G +   N S++G  +    S+  ++RLM S+K+F+GGLS+ TDD  L + F  
Sbjct: 1   MAFCNKLGGLLRQNISSNG--NVPVTSMLGSLRLM-STKLFIGGLSWGTDDASLRDAFAH 60

Query: 61  YGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSG 120
           +G+VV+A+VI DR++GRSRGFGFV F     A++AI  +DG++L+GR IR + A +R S 
Sbjct: 61  FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 120

Query: 121 GGGYGGGGGY--GGGGYSGGGGGY--GGGGYGGGGYGGG 155
              YGGGGGY  GGGGY GGGGGY  GGGGYGGGG GGG
Sbjct: 121 PRAYGGGGGYSGGGGGYGGGGGGYGGGGGGYGGGGDGGG 156

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BLAST of Pay0004260 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.7e-21
Identity = 78/135 (57.78%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 38  KVFVGGLSYSTDDQRLTETFNKYGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQA 97
           + FVGGL ++TDDQ L   F+KYG+V+++++ITDR++GRSRGFGFVTF + E    AI+A
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 98  LDGQDLDGRRIRCSYA-TERSSGGGGYGGGGG--------YGGGGYSGGGGGYGGG-GYG 157
           ++GQDLDGR I  + A + RS GGGG+GGGGG         GGGGY GGGGGYGGG   G
Sbjct: 67  MNGQDLDGRNITVNEAQSRRSDGGGGFGGGGGGYGGQRREGGGGGYGGGGGGYGGGRSGG 126

Query: 158 GGGYG---GGSNGFG 160
           GGGYG   GG  G+G
Sbjct: 127 GGGYGSRDGGGGGYG 141

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BLAST of Pay0004260 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-20
Identity = 72/135 (53.33%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 38  KVFVGGLSYSTDDQRLTETFNKYGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQA 97
           + FVGGL+++T+++ L + F  +G+V++++VITDR++GRSRGFGFVTF + +    AI+ 
Sbjct: 9   RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68

Query: 98  LDGQDLDGRRIRCSYATERSSGGGG---YGGGGGYG---GGGYSGGGGGY-----GGGGY 157
           ++G++LDGR I  + A  R  GGGG    GGGGGYG   GGGY GGGGGY     GGGGY
Sbjct: 69  MNGKELDGRNITVNQAQSRGGGGGGGGYGGGGGGYGGREGGGYGGGGGGYGGRREGGGGY 128

Query: 158 GGGGYGGGSNGFGDK 162
           GGGGYGGG  G+G +
Sbjct: 129 GGGGYGGGGGGYGGR 143

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BLAST of Pay0004260 vs. ExPASy TrEMBL
Match: A0A1S3BNP0 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103491813 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.0e-71
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY 60
           MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY
Sbjct: 1   MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY 60

Query: 61  GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGG 120
           GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGG
Sbjct: 61  GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGG 120

Query: 121 GGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA 163
           GGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA
Sbjct: 121 GGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA 162

[Close]

BLAST of Pay0004260 vs. ExPASy TrEMBL
Match: A0A5D3BIN3 (Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001370 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.0e-71
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY 60
           MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY
Sbjct: 36  MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY 95

Query: 61  GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGG 120
           GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGG
Sbjct: 96  GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGG 155

Query: 121 GGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA 163
           GGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA
Sbjct: 156 GGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA 197

[Close]

BLAST of Pay0004260 vs. ExPASy TrEMBL
Match: A0A0A0LQL8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039190 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 9.6e-57
Identity = 143/170 (84.12%), Postives = 149/170 (87.65%), Query Frame = 0


Query: 1   MAFLSKVGKVFSNSSASGIRSHLQP---SVFQTIRLMSSSKVFVGGLSYSTDDQRLTETF 60
           MAFLSKVGK+FS SSASGIRSH QP   SVFQT+R MSSSKVFVGGLSY TDDQRLTE F
Sbjct: 1   MAFLSKVGKIFSQSSASGIRSHFQPSNLSVFQTLRFMSSSKVFVGGLSYGTDDQRLTEAF 60

Query: 61  NKYGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERS 120
            KYGEVVEARVI DRD+GRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYAT+R+
Sbjct: 61  TKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATDRA 120

Query: 121 S----GGGGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNG--FGDK 162
           S    GGGGYGGGGGYGGGGY GG GGYGGGGYGGGGYGGG  G  F D+
Sbjct: 121 SGGGGGGGGYGGGGGYGGGGYGGGRGGYGGGGYGGGGYGGGGGGDDFADR 170

[Close]

BLAST of Pay0004260 vs. ExPASy TrEMBL
Match: A0A6J1C734 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111009002 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.3e-42
Identity = 122/160 (76.25%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 1   MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY 60
           MAFLSKVGK+FS SS + I S L+PS+FQTIR MSSSKVFVGGLSY TDDQ L E F KY
Sbjct: 1   MAFLSKVGKIFSQSS-TRIGSDLRPSIFQTIRFMSSSKVFVGGLSYGTDDQSLREAFTKY 60

Query: 61  GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGG 120
           G+VVEARVI DRD+GRSRGFGFVTF A+E+ASSAIQALDGQDLDGRRIR ++ATERS GG
Sbjct: 61  GDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLDGRRIRVNFATERSRGG 120

Query: 121 GGYGGGGGYGGGGYSGGG-GGYGGGGYGGGGYGGGSNGFG 160
            G GGGGGYGGGGY GGG  GYG    GGGGYG G  G+G
Sbjct: 121 FG-GGGGGYGGGGYGGGGNAGYG----GGGGYGRGGGGYG 154

[Close]

BLAST of Pay0004260 vs. ExPASy TrEMBL
Match: A0A6J1ECL7 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111431328 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 9.6e-41
Identity = 110/145 (75.86%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 1   MAFLSKVGKVFSNSSASGIRSHLQP---SVFQTIRLMSSSKVFVGGLSYSTDDQRLTETF 60
           MAFLSKVGK+FS SSAS IRS LQP   S+FQ+IRLMSSSKVFVGGLSY TDDQ L E F
Sbjct: 1   MAFLSKVGKIFSKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLKEAF 60

Query: 61  NKYGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERS 120
           +KYGEVVEARVITDRD+GRSRGFGFVTF A+E+ASSAIQALDGQDL GR IR ++ATERS
Sbjct: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120

Query: 121 SGGGGY-GGGGGYGGGGYSGGGGGY 142
            GGGG+ GG  GY       GGGGY
Sbjct: 121 RGGGGFDGGSSGYNRSSSYQGGGGY 145

[Close]

BLAST of Pay0004260 vs. NCBI nr
Match: XP_008450169.1 (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like [Cucumis melo] >XP_008450224.1 PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like [Cucumis melo])

HSP 1 Score: 277.3 bits (708), Expect = 8.3e-71
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY 60
           MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY
Sbjct: 1   MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY 60

Query: 61  GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGG 120
           GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGG
Sbjct: 61  GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGG 120

Query: 121 GGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA 163
           GGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA
Sbjct: 121 GGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA 162

[Close]

BLAST of Pay0004260 vs. NCBI nr
Match: TYJ98936.1 (glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 8.3e-71
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY 60
           MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY
Sbjct: 36  MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY 95

Query: 61  GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGG 120
           GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGG
Sbjct: 96  GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGG 155

Query: 121 GGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA 163
           GGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA
Sbjct: 156 GGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA 197

[Close]

BLAST of Pay0004260 vs. NCBI nr
Match: XP_004137435.1 (glycine-rich RNA-binding protein 3, mitochondrial [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 2.0e-56
Identity = 143/170 (84.12%), Postives = 149/170 (87.65%), Query Frame = 0


Query: 1   MAFLSKVGKVFSNSSASGIRSHLQP---SVFQTIRLMSSSKVFVGGLSYSTDDQRLTETF 60
           MAFLSKVGK+FS SSASGIRSH QP   SVFQT+R MSSSKVFVGGLSY TDDQRLTE F
Sbjct: 1   MAFLSKVGKIFSQSSASGIRSHFQPSNLSVFQTLRFMSSSKVFVGGLSYGTDDQRLTEAF 60

Query: 61  NKYGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERS 120
            KYGEVVEARVI DRD+GRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYAT+R+
Sbjct: 61  TKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATDRA 120

Query: 121 S----GGGGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNG--FGDK 162
           S    GGGGYGGGGGYGGGGY GG GGYGGGGYGGGGYGGG  G  F D+
Sbjct: 121 SGGGGGGGGYGGGGGYGGGGYGGGRGGYGGGGYGGGGYGGGGGGDDFADR 170

[Close]

BLAST of Pay0004260 vs. NCBI nr
Match: XP_022137596.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia])

HSP 1 Score: 182.6 bits (462), Expect = 2.8e-42
Identity = 122/160 (76.25%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 1   MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY 60
           MAFLSKVGK+FS SS + I S L+PS+FQTIR MSSSKVFVGGLSY TDDQ L E F KY
Sbjct: 1   MAFLSKVGKIFSQSS-TRIGSDLRPSIFQTIRFMSSSKVFVGGLSYGTDDQSLREAFTKY 60

Query: 61  GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSGG 120
           G+VVEARVI DRD+GRSRGFGFVTF A+E+ASSAIQALDGQDLDGRRIR ++ATERS GG
Sbjct: 61  GDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLDGRRIRVNFATERSRGG 120

Query: 121 GGYGGGGGYGGGGYSGGG-GGYGGGGYGGGGYGGGSNGFG 160
            G GGGGGYGGGGY GGG  GYG    GGGGYG G  G+G
Sbjct: 121 FG-GGGGGYGGGGYGGGGNAGYG----GGGGYGRGGGGYG 154

[Close]

BLAST of Pay0004260 vs. NCBI nr
Match: KAG6584410.1 (Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.4 bits (446), Expect = 2.0e-40
Identity = 110/145 (75.86%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 1   MAFLSKVGKVFSNSSASGIRSHLQP---SVFQTIRLMSSSKVFVGGLSYSTDDQRLTETF 60
           MAFLSKVGK+FS SSAS IRS LQP   S+FQ+IRLMSSSKVFVGGLSY TDDQ L E F
Sbjct: 26  MAFLSKVGKIFSQSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLKEAF 85

Query: 61  NKYGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERS 120
           +KYGEVVEARVITDRD+GRSRGFGFVTF A+E+ASSAIQALDGQDL GR IR ++ATERS
Sbjct: 86  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 145

Query: 121 SGGGGY-GGGGGYGGGGYSGGGGGY 142
            GGGG+ GG  GY       GGGGY
Sbjct: 146 RGGGGFDGGSSGYNRSSSYQGGGGY 170

[Close]

BLAST of Pay0004260 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-34
Identity = 101/165 (61.21%), Postives = 125/165 (75.76%), Query Frame = 0


Query: 1   MAFLSKVGKVFSNSSASGIRSHL---QPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETF 60
           MAFLSK G +   ++   + + +    PS+FQ IR MSSSK+F+GG++YS D+  L E F
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 61  NKYGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERS 120
            KYGEVV+ RVI DR++GRSRGFGFVTF +SE ASSAIQALDG+DL GR ++ +YA +R+
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 121 SGGGGYGGGGGYGGGGYSGGGGGYGG--GGYGG-GGYGGGSNGFG 160
           SGGG  GGG G GGGGY GG GGYGG  GGYGG GGYGGG+ G+G
Sbjct: 121 SGGGFGGGGYGGGGGGY-GGSGGYGGGAGGYGGSGGYGGGAGGYG 164

[Close]

BLAST of Pay0004260 vs. TAIR 10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5 )

HSP 1 Score: 131.3 bits (329), Expect = 6.8e-31
Identity = 104/179 (58.10%), Postives = 128/179 (71.51%), Query Frame = 0


Query: 1   MAFLSKVGKVFSNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNKY 60
           MAFLSKVG++FS +S+    S    S+ Q+IR MSSSK+FVGG+SYSTD+  L E F+KY
Sbjct: 1   MAFLSKVGRLFSQTSSHVTAS---SSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKY 60

Query: 61  GEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSG- 120
           GEVV+A++I DR++GRSRGF FVTF ++E+AS+A+Q LDGQDL GRRIR +YATER SG 
Sbjct: 61  GEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERGSGF 120

Query: 121 --------GGGYGGG-GGYG--GGGYSGGGGGYGG-----GGYGGGGYGGGSNGFGDKA 163
                   GGGYG   GGYG   GGY GG GGYGG     G  GGGG  GG++ +G  A
Sbjct: 121 GGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGGNA 175

[Close]

BLAST of Pay0004260 vs. TAIR 10
Match: AT4G13850.2 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 107.8 bits (268), Expect = 8.1e-24
Identity = 81/156 (51.92%), Postives = 110/156 (70.51%), Query Frame = 0


Query: 1   MAFLSKVGKVF-SNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNK 60
           MAF +K+G +   N S++G  +    S+  ++RLM S+K+F+GGLS+ TDD  L + F  
Sbjct: 1   MAFCNKLGGLLRQNISSNG--NVPVTSMLGSLRLM-STKLFIGGLSWGTDDASLRDAFAH 60

Query: 61  YGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSG 120
           +G+VV+A+VI DR++GRSRGFGFV F     A++AI  +DG++L+GR IR + A +R S 
Sbjct: 61  FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 120

Query: 121 GGGYGGGGGY----GGGGYSGGGGGYGGGGYGGGGY 152
              YGGGGGY    GGGGY GGGGGYGGGG GGGG+
Sbjct: 121 PRAYGGGGGYSYGGGGGGYGGGGGGYGGGGDGGGGF 153

[Close]

BLAST of Pay0004260 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-23
Identity = 85/159 (53.46%), Postives = 113/159 (71.07%), Query Frame = 0


Query: 1   MAFLSKVGKVF-SNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNK 60
           MAF +K+G +   N S++G  +    S+  ++RLM S+K+F+GGLS+ TDD  L + F  
Sbjct: 1   MAFCNKLGGLLRQNISSNG--NVPVTSMLGSLRLM-STKLFIGGLSWGTDDASLRDAFAH 60

Query: 61  YGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSG 120
           +G+VV+A+VI DR++GRSRGFGFV F     A++AI  +DG++L+GR IR + A +R S 
Sbjct: 61  FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 120

Query: 121 GGGYGGGGGY--GGGGYSGGGGGY--GGGGYGGGGYGGG 155
              YGGGGGY  GGGGY GGGGGY  GGGGYGGGG GGG
Sbjct: 121 PRAYGGGGGYSGGGGGYGGGGGGYGGGGGGYGGGGDGGG 156

[Close]

BLAST of Pay0004260 vs. TAIR 10
Match: AT4G13850.3 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-22
Identity = 77/152 (50.66%), Postives = 106/152 (69.74%), Query Frame = 0


Query: 1   MAFLSKVGKVF-SNSSASGIRSHLQPSVFQTIRLMSSSKVFVGGLSYSTDDQRLTETFNK 60
           MAF +K+G +   N S++G  +    S+  ++RLM S+K+F+GGLS+ TDD  L + F  
Sbjct: 1   MAFCNKLGGLLRQNISSNG--NVPVTSMLGSLRLM-STKLFIGGLSWGTDDASLRDAFAH 60

Query: 61  YGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERSSG 120
           +G+VV+A+VI DR++GRSRGFGFV F     A++AI  +DG++L+GR IR + A +R S 
Sbjct: 61  FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 120

Query: 121 GGGYGGGGGYGGGGYSGGGGGYGGGGYGGGGY 152
              YG     GGGGYSGGGGGYGGGG GGGG+
Sbjct: 121 PRAYG-----GGGGYSGGGGGYGGGGDGGGGF 144

The following BLAST results are available for this feature:

BLAST of Pay0004260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	4.2e-33	61.21	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9C909	9.6e-30	58.10	Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	1.9e-22	53.46	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q43472	3.7e-21	57.78	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]
Q99070	1.8e-20	53.33	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]

BLAST of Pay0004260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BNP0	4.0e-71	100.00	glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucumis melo OX=3656 G...	[more]
A0A5D3BIN3	4.0e-71	100.00	Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0LQL8	9.6e-57	84.12	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039190 PE=4 SV...	[more]
A0A6J1C734	1.3e-42	76.25	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX...	[more]
A0A6J1ECL7	9.6e-41	75.86	glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=...	[more]

BLAST of Pay0004260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450169.1	8.3e-71	100.00	PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like [Cucumis melo]...	[more]
TYJ98936.1	8.3e-71	100.00	glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa]	[more]
XP_004137435.1	2.0e-56	84.12	glycine-rich RNA-binding protein 3, mitochondrial [Cucumis sativus]	[more]
XP_022137596.1	2.8e-42	76.25	glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia]	[more]
KAG6584410.1	2.0e-40	75.86	Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosper...	[more]

BLAST of Pay0004260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61030.1	3.0e-34	61.21	glycine-rich RNA-binding protein 3	[more]
AT1G74230.1	6.8e-31	58.10	glycine-rich RNA-binding protein 5	[more]
AT4G13850.2	8.1e-24	51.92	glycine-rich RNA-binding protein 2	[more]
AT4G13850.1	1.4e-23	53.46	glycine-rich RNA-binding protein 2	[more]
AT4G13850.3	2.0e-22	50.66	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 38..111 e-value: 1.0E-28 score: 111.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 39..109 e-value: 5.3E-22 score: 77.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 37..115 score: 21.804361
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 38..111 e-value: 3.1E-4 score: 30.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 29..160 e-value: 5.4E-34 score: 119.3
None	No IPR available	PANTHER	PTHR48027:SF1	GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL	coord: 1..156
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 1..156
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 25..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0004260.3	Pay0004260.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding