Pay0004123 (gene) Melon (Payzawat) v1

Overview


Name	Pay0004123
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr07: 9709305 .. 9710326 (+)
RNA-Seq Expression	Pay0004123
Synteny	Pay0004123

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGGGATTGAACAGTTGAAGAAATTAGGAGCCACAGTGTTTGAGGGTTCCACGGATCCAGCTGACGCCGAGGTCTGGTTAAATATGCTGGAGAAATGCTTCGACATAATGAGTTGTCCTCAAGAGCGAAAAGTCAGATTAGCCACATTTCTGTTACAGAAAGAGGCCGAGGGATGGTTGAAATCCATTATAGCCAGCCGCAATGATGCACGTACGTTATATTGGCAGACGTTCAGAGGCATATTTGAGGAAAAGTACTATCCCACCACATATTGTGAGGCAAAGAGAGATGAGTTTATGAAGCTGAAACAAGGGTCACTTTTAGTGGCCAAGTACGAGAGGAAGTATACCGAGCTTTCACGGTATGCTGAAATGATTGTGGCATCTGAGAGTGATAGGTGTCGCAGGTTCGAGAGAGGGCTACGTTTTGAGATACGTACCCCAGTGACTGCTATTGCCAAGTGGAGAATTTTTCCCAGCTAGTAGAGACTGCTTTACGTGTGGAGCAGAGTATTCTAGAGGAAAAGTCGACAATGGAGCTTAGTCGAGGAGTTTCAACAACTAGTGGTATTCGAGGTCGAGAGCAACGGAGGTTCACACCTGGAGTGAATGTTTCAGGTTGTCAAGACTTCAAGCGTCGATCAGGTGGCAAACCATTGAGGCAGATGAGTTCAAGTAGTGCTTATCAGAGGCAGAGTCAGAGAGCTTCCAGTCAATCTGCGAACTCAGTAGCAAGATCACGGATGGGTCAAAAGTCTGTTGCTAATGAATCCTGGAGAACCCCATGTGTAAGTTGTGGCAAGTGTCATCGGGGTCAGTGTCTTATTGGCGCCGGCGTGTGTTACCAGTGTGGAAAAACAGGGCATTTCAAGAGGGATTGTCCACAACTGAGAGTAGCAGCTCGGAGGGACCAAAGAATTGAGTCCCACACAGTTGAGCAGCCAAGAATCTTAATAGCCGCATGGGAGGGAACTAGTGGTGCAAGACAAAAGGGACTTGTGGGGAGACCTAGGCAGTAG

mRNA sequence

ATGTATGGGATTGAACAGTTGAAGAAATTAGGAGCCACAGTGTTTGAGGGTTCCACGGATCCAGCTGACGCCGAGACGTTCAGAGGCATATTTGAGGAAAAGTACTATCCCACCACATATTGTGAGGCAAAGAGAGATGAGTTTATGAAGCTGAAACAAGGGTCACTTTTAGTGGCCAAGTACGAGAGGAAGTATACCGAGCTTTCACGGTATGCTGAAATGATTGTGGCATCTGAGAGTGATAGGTGTCGCAGGTTCGAGAGAGGGCTACGTTTTGAGATACGTACCCCACTAGTAGAGACTGCTTTACGTGTGGAGCAGAGTATTCTAGAGGAAAAGTCGACAATGGAGCTTAGTCGAGGAGTTTCAACAACTAGTGGTTGTCAAGACTTCAAGCGTCGATCAGGTGGCAAACCATTGAGGCAGATGAGTTCAAGTAGTGCTTATCAGAGGCAGAGTCAGAGAGCTTCCAGTCAATCTGCGAACTCAGTAGCAAGATCACGGATGGGTCAAAAGTCTGTTGCTAATGAATCCTGGAGAACCCCATGTTGTGGAAAAACAGGGCATTTCAAGAGGGATTGTCCACAACTGAGAGTAGCAGCTCGGAGGGACCAAAGAATTGAGTCCCACACAGTTGAGCAGCCAAGAATCTTAATAGCCGCATGGGAGGGAACTAGTGGTGCAAGACAAAAGGGACTTGTGGGGAGACCTAGGCAGTAG

Coding sequence (CDS)

ATGTATGGGATTGAACAGTTGAAGAAATTAGGAGCCACAGTGTTTGAGGGTTCCACGGATCCAGCTGACGCCGAGACGTTCAGAGGCATATTTGAGGAAAAGTACTATCCCACCACATATTGTGAGGCAAAGAGAGATGAGTTTATGAAGCTGAAACAAGGGTCACTTTTAGTGGCCAAGTACGAGAGGAAGTATACCGAGCTTTCACGGTATGCTGAAATGATTGTGGCATCTGAGAGTGATAGGTGTCGCAGGTTCGAGAGAGGGCTACGTTTTGAGATACGTACCCCACTAGTAGAGACTGCTTTACGTGTGGAGCAGAGTATTCTAGAGGAAAAGTCGACAATGGAGCTTAGTCGAGGAGTTTCAACAACTAGTGGTTGTCAAGACTTCAAGCGTCGATCAGGTGGCAAACCATTGAGGCAGATGAGTTCAAGTAGTGCTTATCAGAGGCAGAGTCAGAGAGCTTCCAGTCAATCTGCGAACTCAGTAGCAAGATCACGGATGGGTCAAAAGTCTGTTGCTAATGAATCCTGGAGAACCCCATGTTGTGGAAAAACAGGGCATTTCAAGAGGGATTGTCCACAACTGAGAGTAGCAGCTCGGAGGGACCAAAGAATTGAGTCCCACACAGTTGAGCAGCCAAGAATCTTAATAGCCGCATGGGAGGGAACTAGTGGTGCAAGACAAAAGGGACTTGTGGGGAGACCTAGGCAGTAG

Protein sequence

MYGIEQLKKLGATVFEGSTDPADAETFRGIFEEKYYPTTYCEAKRDEFMKLKQGSLLVAKYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPLVETALRVEQSILEEKSTMELSRGVSTTSGCQDFKRRSGGKPLRQMSSSSAYQRQSQRASSQSANSVARSRMGQKSVANESWRTPCCGKTGHFKRDCPQLRVAARRDQRIESHTVEQPRILIAAWEGTSGARQKGLVGRPRQ

Homology

[Close]

BLAST of Pay0004123 vs. ExPASy TrEMBL
Match: A0A1S3CMU0 (uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.5e-109
Identity = 214/251 (85.26%), Postives = 225/251 (89.64%), Query Frame = 0


Query: 1   MYGIEQLKKLGATVFEGSTDPADAETFRGIFEEKYYPTTYCEAKRDEFMKLKQGSLLVAK 60
           MYGIE+LKKLGATVFEG TDPA+ ETFRGIFEEKYYPTTY EAKRDEF++LKQGSL V +
Sbjct: 1   MYGIERLKKLGATVFEGFTDPANTETFRGIFEEKYYPTTYYEAKRDEFLELKQGSLSVVE 60

Query: 61  YERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTP------------LVETALRVEQS 120
           YERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTP            LVETALRVEQS
Sbjct: 61  YERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVETALRVEQS 120

Query: 121 ILEEKSTMELSRGVSTTSGCQDFKRRSGGKPLRQMSSSSAYQRQSQRASSQSANSVARSR 180
           I+EEKSTMELSRGVSTTSGCQDFK RSGGKPLRQMSS SAYQRQSQRASSQSANSVARSR
Sbjct: 121 IVEEKSTMELSRGVSTTSGCQDFKHRSGGKPLRQMSSGSAYQRQSQRASSQSANSVARSR 180

Query: 181 MGQKSVANESWRTPCCGKTGHFKRDCPQLRVAARRDQRIESHTVEQPRILIAAWEGTSGA 240
            GQ+SVA+ES RTPCCG+TGHFKRDCPQLRVA RRDQ +ESHTVEQPRI  AA EGTSGA
Sbjct: 181 TGQESVASESRRTPCCGQTGHFKRDCPQLRVAVRRDQGVESHTVEQPRISTAAGEGTSGA 240

[Close]

BLAST of Pay0004123 vs. ExPASy TrEMBL
Match: A0A5A7URC7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00290 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.8e-105
Identity = 214/272 (78.68%), Postives = 225/272 (82.72%), Query Frame = 0


Query: 1   MYGIEQLKKLGATVFEGSTDPADAE---------------------TFRGIFEEKYYPTT 60
           MYGIE+LKKLGATVFEG TDPA+ E                     TFRGIFEEKYYPTT
Sbjct: 531 MYGIERLKKLGATVFEGFTDPANTEVEAWWKSIIVRRNDSRTLDWQTFRGIFEEKYYPTT 590

Query: 61  YCEAKRDEFMKLKQGSLLVAKYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTP-- 120
           Y EAKRDEF++LKQGSL V +YERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTP  
Sbjct: 591 YYEAKRDEFLELKQGSLSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMT 650

Query: 121 ----------LVETALRVEQSILEEKSTMELSRGVSTTSGCQDFKRRSGGKPLRQMSSSS 180
                     LVETALRVEQSI+EEKSTMELSRGVSTTSGCQDFK RSGGKPLRQMSS S
Sbjct: 651 AIAKWMNFSQLVETALRVEQSIVEEKSTMELSRGVSTTSGCQDFKHRSGGKPLRQMSSGS 710

Query: 181 AYQRQSQRASSQSANSVARSRMGQKSVANESWRTPCCGKTGHFKRDCPQLRVAARRDQRI 240
           AYQRQSQRASSQSANSVARSR GQ+SVA+ES RTPCCG+TGHFKRDCPQLRVA RRDQ +
Sbjct: 711 AYQRQSQRASSQSANSVARSRTGQESVASESRRTPCCGQTGHFKRDCPQLRVAVRRDQGV 770

[Close]

BLAST of Pay0004123 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 6.5e-94
Identity = 213/340 (62.65%), Postives = 223/340 (65.59%), Query Frame = 0


Query: 1   MYGIEQLKKLGATVFEGSTDPADAE----------------------------------- 60
           MYGIE+LKKLGATVFEGSTDPADAE                                   
Sbjct: 275 MYGIERLKKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPQERKVKLATFLLQKEAEGW 334

Query: 61  -----------------TFRGIFEEKYYPTTYCEAKRDEFMKLKQGSLLVAKYERKYTEL 120
                            TFRGIFEEKYYPTTYCEAKRDEF++LKQ SL VAKYERKYTEL
Sbjct: 335 WKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQWSLSVAKYERKYTEL 394

Query: 121 SRYAEMIVASESDRCRRFERGLRFEIRTP------------LVETALRVEQSILEEKSTM 180
           SRYAEMIVASESDRC RFERGLRFEIRTP            LVETALRV+QSI+EEKS M
Sbjct: 395 SRYAEMIVASESDRCHRFERGLRFEIRTPVTAIAKWMNFSQLVETALRVKQSIVEEKSAM 454

Query: 181 ELSRGVSTT-----------------SGCQDFKRRSGGKPLRQMSSSSAYQRQSQRASSQ 240
           ELSRGVSTT                 SGCQDFKRRSGGKPLRQMSS SAYQRQS+RASSQ
Sbjct: 455 ELSRGVSTTSGIRGREQRRFTPGVNVSGCQDFKRRSGGKPLRQMSSGSAYQRQSRRASSQ 514

[Close]

BLAST of Pay0004123 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 6.5e-94
Identity = 213/340 (62.65%), Postives = 223/340 (65.59%), Query Frame = 0


Query: 1   MYGIEQLKKLGATVFEGSTDPADAE----------------------------------- 60
           MYGIE+LKKLGATVFEGSTDPADAE                                   
Sbjct: 275 MYGIERLKKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPQERKVKLATFLLLKEAEGW 334

Query: 61  -----------------TFRGIFEEKYYPTTYCEAKRDEFMKLKQGSLLVAKYERKYTEL 120
                            TFRGIFEEKYYPTTYCEAKRDEF++LKQ SL VAKYERKYTEL
Sbjct: 335 WKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQWSLSVAKYERKYTEL 394

Query: 121 SRYAEMIVASESDRCRRFERGLRFEIRTP------------LVETALRVEQSILEEKSTM 180
           SRYAEMIVASESDRC RFERGLRFEIRTP            LVETALRV+QSI+EEKS M
Sbjct: 395 SRYAEMIVASESDRCHRFERGLRFEIRTPVTAIAKWMNFSQLVETALRVKQSIVEEKSAM 454

Query: 181 ELSRGVSTT-----------------SGCQDFKRRSGGKPLRQMSSSSAYQRQSQRASSQ 240
           ELSRGVSTT                 SGCQDFKRRSGGKPLRQMSS SAYQRQS+RASSQ
Sbjct: 455 ELSRGVSTTSGIRGREQRRFTPGVNVSGCQDFKRRSGGKPLRQMSSGSAYQRQSRRASSQ 514

[Close]

BLAST of Pay0004123 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.5e-93
Identity = 204/300 (68.00%), Postives = 219/300 (73.00%), Query Frame = 0


Query: 1   MYGIEQLKKLGATVFEGSTDPADAE------------TFRGIFEEKYYPTTYCEAKRDEF 60
           MYGIE+LK+LGATVF GSTD ADAE            TFRGIFEEKYYPTT CEAKRDEF
Sbjct: 213 MYGIERLKELGATVFVGSTDLADAEVWHNDARTLDWQTFRGIFEEKYYPTTCCEAKRDEF 272

Query: 61  MKLKQGSLLVAKYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTP----------- 120
           ++LKQGSL VAKY+RKYTELS YAE+I+ASESDRCRRFERGL FEIRTP           
Sbjct: 273 LELKQGSLSVAKYKRKYTELSWYAEVIMASESDRCRRFERGLHFEIRTPVTAIAKWTDFS 332

Query: 121 -LVETALRVEQSILEEKSTMELSRGVSTT-----------------SGCQDFKRRSGGKP 180
            L+ETALRVEQSI+EEKS MELSRGVSTT                 SGCQDFKRR GGKP
Sbjct: 333 QLIETALRVEQSIVEEKSAMELSRGVSTTSRIRGREQRRSTPGVNISGCQDFKRRLGGKP 392

Query: 181 LRQMSSSSAYQRQSQRASSQSANSVARSRMGQKSVANESWRTPC---------------- 240
           LRQMSS SAYQRQSQRASSQ  NSVAR R GQ+SVA+ES RTPC                
Sbjct: 393 LRQMSSGSAYQRQSQRASSQFTNSVARPRTGQESVASESRRTPCVSCSKSHRGQCLVGAG 452

[Close]

BLAST of Pay0004123 vs. NCBI nr
Match: XP_008464978.1 (PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo])

HSP 1 Score: 403.7 bits (1036), Expect = 1.1e-108
Identity = 214/251 (85.26%), Postives = 225/251 (89.64%), Query Frame = 0


Query: 1   MYGIEQLKKLGATVFEGSTDPADAETFRGIFEEKYYPTTYCEAKRDEFMKLKQGSLLVAK 60
           MYGIE+LKKLGATVFEG TDPA+ ETFRGIFEEKYYPTTY EAKRDEF++LKQGSL V +
Sbjct: 1   MYGIERLKKLGATVFEGFTDPANTETFRGIFEEKYYPTTYYEAKRDEFLELKQGSLSVVE 60

Query: 61  YERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTP------------LVETALRVEQS 120
           YERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTP            LVETALRVEQS
Sbjct: 61  YERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVETALRVEQS 120

Query: 121 ILEEKSTMELSRGVSTTSGCQDFKRRSGGKPLRQMSSSSAYQRQSQRASSQSANSVARSR 180
           I+EEKSTMELSRGVSTTSGCQDFK RSGGKPLRQMSS SAYQRQSQRASSQSANSVARSR
Sbjct: 121 IVEEKSTMELSRGVSTTSGCQDFKHRSGGKPLRQMSSGSAYQRQSQRASSQSANSVARSR 180

Query: 181 MGQKSVANESWRTPCCGKTGHFKRDCPQLRVAARRDQRIESHTVEQPRILIAAWEGTSGA 240
            GQ+SVA+ES RTPCCG+TGHFKRDCPQLRVA RRDQ +ESHTVEQPRI  AA EGTSGA
Sbjct: 181 TGQESVASESRRTPCCGQTGHFKRDCPQLRVAVRRDQGVESHTVEQPRISTAAGEGTSGA 240

[Close]

BLAST of Pay0004123 vs. NCBI nr
Match: KAA0057197.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 391.3 bits (1004), Expect = 5.8e-105
Identity = 214/272 (78.68%), Postives = 225/272 (82.72%), Query Frame = 0


Query: 1   MYGIEQLKKLGATVFEGSTDPADAE---------------------TFRGIFEEKYYPTT 60
           MYGIE+LKKLGATVFEG TDPA+ E                     TFRGIFEEKYYPTT
Sbjct: 531 MYGIERLKKLGATVFEGFTDPANTEVEAWWKSIIVRRNDSRTLDWQTFRGIFEEKYYPTT 590

Query: 61  YCEAKRDEFMKLKQGSLLVAKYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTP-- 120
           Y EAKRDEF++LKQGSL V +YERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTP  
Sbjct: 591 YYEAKRDEFLELKQGSLSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMT 650

Query: 121 ----------LVETALRVEQSILEEKSTMELSRGVSTTSGCQDFKRRSGGKPLRQMSSSS 180
                     LVETALRVEQSI+EEKSTMELSRGVSTTSGCQDFK RSGGKPLRQMSS S
Sbjct: 651 AIAKWMNFSQLVETALRVEQSIVEEKSTMELSRGVSTTSGCQDFKHRSGGKPLRQMSSGS 710

Query: 181 AYQRQSQRASSQSANSVARSRMGQKSVANESWRTPCCGKTGHFKRDCPQLRVAARRDQRI 240
           AYQRQSQRASSQSANSVARSR GQ+SVA+ES RTPCCG+TGHFKRDCPQLRVA RRDQ +
Sbjct: 711 AYQRQSQRASSQSANSVARSRTGQESVASESRRTPCCGQTGHFKRDCPQLRVAVRRDQGV 770

[Close]

BLAST of Pay0004123 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 353.6 bits (906), Expect = 1.3e-93
Identity = 213/340 (62.65%), Postives = 223/340 (65.59%), Query Frame = 0


Query: 1   MYGIEQLKKLGATVFEGSTDPADAE----------------------------------- 60
           MYGIE+LKKLGATVFEGSTDPADAE                                   
Sbjct: 275 MYGIERLKKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPQERKVKLATFLLLKEAEGW 334

Query: 61  -----------------TFRGIFEEKYYPTTYCEAKRDEFMKLKQGSLLVAKYERKYTEL 120
                            TFRGIFEEKYYPTTYCEAKRDEF++LKQ SL VAKYERKYTEL
Sbjct: 335 WKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQWSLSVAKYERKYTEL 394

Query: 121 SRYAEMIVASESDRCRRFERGLRFEIRTP------------LVETALRVEQSILEEKSTM 180
           SRYAEMIVASESDRC RFERGLRFEIRTP            LVETALRV+QSI+EEKS M
Sbjct: 395 SRYAEMIVASESDRCHRFERGLRFEIRTPVTAIAKWMNFSQLVETALRVKQSIVEEKSAM 454

Query: 181 ELSRGVSTT-----------------SGCQDFKRRSGGKPLRQMSSSSAYQRQSQRASSQ 240
           ELSRGVSTT                 SGCQDFKRRSGGKPLRQMSS SAYQRQS+RASSQ
Sbjct: 455 ELSRGVSTTSGIRGREQRRFTPGVNVSGCQDFKRRSGGKPLRQMSSGSAYQRQSRRASSQ 514

[Close]

BLAST of Pay0004123 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 353.6 bits (906), Expect = 1.3e-93
Identity = 213/340 (62.65%), Postives = 223/340 (65.59%), Query Frame = 0


Query: 1   MYGIEQLKKLGATVFEGSTDPADAE----------------------------------- 60
           MYGIE+LKKLGATVFEGSTDPADAE                                   
Sbjct: 275 MYGIERLKKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPQERKVKLATFLLQKEAEGW 334

Query: 61  -----------------TFRGIFEEKYYPTTYCEAKRDEFMKLKQGSLLVAKYERKYTEL 120
                            TFRGIFEEKYYPTTYCEAKRDEF++LKQ SL VAKYERKYTEL
Sbjct: 335 WKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQWSLSVAKYERKYTEL 394

Query: 121 SRYAEMIVASESDRCRRFERGLRFEIRTP------------LVETALRVEQSILEEKSTM 180
           SRYAEMIVASESDRC RFERGLRFEIRTP            LVETALRV+QSI+EEKS M
Sbjct: 395 SRYAEMIVASESDRCHRFERGLRFEIRTPVTAIAKWMNFSQLVETALRVKQSIVEEKSAM 454

Query: 181 ELSRGVSTT-----------------SGCQDFKRRSGGKPLRQMSSSSAYQRQSQRASSQ 240
           ELSRGVSTT                 SGCQDFKRRSGGKPLRQMSS SAYQRQS+RASSQ
Sbjct: 455 ELSRGVSTTSGIRGREQRRFTPGVNVSGCQDFKRRSGGKPLRQMSSGSAYQRQSRRASSQ 514

[Close]

BLAST of Pay0004123 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 351.7 bits (901), Expect = 5.1e-93
Identity = 204/300 (68.00%), Postives = 219/300 (73.00%), Query Frame = 0


Query: 1   MYGIEQLKKLGATVFEGSTDPADAE------------TFRGIFEEKYYPTTYCEAKRDEF 60
           MYGIE+LK+LGATVF GSTD ADAE            TFRGIFEEKYYPTT CEAKRDEF
Sbjct: 213 MYGIERLKELGATVFVGSTDLADAEVWHNDARTLDWQTFRGIFEEKYYPTTCCEAKRDEF 272

Query: 61  MKLKQGSLLVAKYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTP----------- 120
           ++LKQGSL VAKY+RKYTELS YAE+I+ASESDRCRRFERGL FEIRTP           
Sbjct: 273 LELKQGSLSVAKYKRKYTELSWYAEVIMASESDRCRRFERGLHFEIRTPVTAIAKWTDFS 332

Query: 121 -LVETALRVEQSILEEKSTMELSRGVSTT-----------------SGCQDFKRRSGGKP 180
            L+ETALRVEQSI+EEKS MELSRGVSTT                 SGCQDFKRR GGKP
Sbjct: 333 QLIETALRVEQSIVEEKSAMELSRGVSTTSRIRGREQRRSTPGVNISGCQDFKRRLGGKP 392

Query: 181 LRQMSSSSAYQRQSQRASSQSANSVARSRMGQKSVANESWRTPC---------------- 240
           LRQMSS SAYQRQSQRASSQ  NSVAR R GQ+SVA+ES RTPC                
Sbjct: 393 LRQMSSGSAYQRQSQRASSQFTNSVARPRTGQESVASESRRTPCVSCSKSHRGQCLVGAG 452

The following BLAST results are available for this feature:

BLAST of Pay0004123 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0004123 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CMU0	5.5e-109	85.26	uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=...	[more]
A0A5A7URC7	2.8e-105	78.68	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G0029...	[more]
A0A5D3BTP3	6.5e-94	62.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5A7T7M6	6.5e-94	62.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5A7U9X4	2.5e-93	68.00	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Pay0004123 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464978.1	1.1e-108	85.26	PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo]	[more]
KAA0057197.1	5.8e-105	78.68	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0037581.1	1.3e-93	62.65	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK03091.1	1.3e-93	62.65	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0051980.1	5.1e-93	68.00	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D...	[more]

BLAST of Pay0004123 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 26..91 e-value: 1.8E-5 score: 24.9
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 184..196 e-value: 1.4E-4 score: 21.8
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 184..196 score: 8.795613
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..182
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 21..195
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 21..195
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 176..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0004123.1	Pay0004123.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0008270	zinc ion binding