Pay0003778 (gene) Melon (Payzawat) v1

Overview
NamePay0003778
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionlysine--tRNA ligase-like
Locationchr05: 6343095 .. 6344224 (+)
RNA-Seq ExpressionPay0003778
SyntenyPay0003778
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAACCTGATGAAGCCGATGATGGTGTTTGCACAAGAGCTTGGAGATTCTTTTTATCTTACTTCACAATTGACGTTCTTTCAGTTCTTCCACTCCCCCAGGTATGAAACTTCAGCCTTTGTTGGCTTAGATTCTATCAATCTTATTGTCAAATTTGTCCATTCCATTTGTAACCAAGGATTCATTTGTAGGACAAGAAAGATAATCATCATTTAGAATATATATGTGAGAGTGCACACACAAAAACAACTAATTATTCAAGCAGAAACATAAAAGCATAATTTACGGAGCGTACTATCCTAAGTTAAGTTTGTGCTATAACAAGATATCCACTCTTGATGTTAAAACACAAAGTCGTATTGTCTAATCCCTTTAGTAATCTACAAGAACTCCAAAGAAATAAGCTCTGGGTCATTATCAATTTTATTTTCCATCCTAAAATATTCAATTATTCTCCTCTTTGGGAAATTATTGGAGGATGACCATGATGGAGATCTCAAATCTTTACACCAACAGCTGTTTGAATGTCTTTTCTATCTTTTCTTTCTTTTTACCTGGGAGGGGTTAAAAATTTTCATTTCTTGTGCATTATTAGCCATGCAGGGTTCACAGAAAGATTTGAACTTTTCATTTGTGGTCGTAAGCTGGCCAATGCATTTTCCGAATTGATCGATCGTATTTATCAGGTAAGAGTTGATTATATCAATCATTAATGTTAGAAGGGTGCACACATGATTAAACTTTTTTGCCAATTTCATGGCATTTGAAAGAGAGAAAGCACATTGGTATTGAACTCAAATTAAACTGGATAATCTATCACCTTTTGGAAGATAACTTTTCTGTACTTTGTTCCATCTTGTATAGACTCTTTCAGTCAAAAGGTTACCAAAGGAATCGTTTTTGTTATGTGTTATGTGCTTAACTCCATAACAATGTGCGTCCAAGCTCTACATGAGCATTCTATTCTTCTTGCTTGGTATACTTGTGCATTATTGGTTTATGTGCCATGTCAAGAAATAATAGTTTCTATTGGAACATTTTAGAATGGTTGTAATGATCTTTTTCTTTTAAAACAAACAAAATTGGCACAGAGGATGATTAGAAGACCAGATCAGGCAACACAATGA

mRNA sequence

ATGCAAAACCTGATGAAGCCGATGATGGTGTTTGCACAAGAGCTTGGAGATTCTTTTTATCTTACTTCACAATTGACGTTCTTTCAGTTCTTCCACTCCCCCAGCCATGCAGGGTTCACAGAAAGATTTGAACTTTTCATTTGTGGTCGTAAGCTGGCCAATGCATTTTCCGAATTGATCGATCGTATTTATCAGAGGATGATTAGAAGACCAGATCAGGCAACACAATGA

Coding sequence (CDS)

ATGCAAAACCTGATGAAGCCGATGATGGTGTTTGCACAAGAGCTTGGAGATTCTTTTTATCTTACTTCACAATTGACGTTCTTTCAGTTCTTCCACTCCCCCAGCCATGCAGGGTTCACAGAAAGATTTGAACTTTTCATTTGTGGTCGTAAGCTGGCCAATGCATTTTCCGAATTGATCGATCGTATTTATCAGAGGATGATTAGAAGACCAGATCAGGCAACACAATGA

Protein sequence

MQNLMKPMMVFAQELGDSFYLTSQLTFFQFFHSPSHAGFTERFELFICGRKLANAFSELIDRIYQRMIRRPDQATQ
Homology
[Close]
BLAST of Pay0003778 vs. ExPASy Swiss-Prot
Match: Q9LJE2 (Lysine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OVA5 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.7e-06
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 36  HAGFTERFELFICGRKLANAFSELIDRIYQR 67
           +AG TERFELFICGR++ANAFSEL D + QR
Sbjct: 484 NAGLTERFELFICGREMANAFSELTDPVDQR 514

[Close]
BLAST of Pay0003778 vs. ExPASy Swiss-Prot
Match: Q3B0J9 (Lysine--tRNA ligase OS=Synechococcus sp. (strain CC9902) OX=316279 GN=lysS PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-04
Identity = 24/40 (60.00%), Postives = 26/40 (65.00%), Query Frame = 0 

Query: 35  SHAGFTERFELFICGRKLANAFSELIDRIYQRMIRRPDQA 75
           S  G  ERFELFI GR+ ANAFSELID + QR      QA
Sbjct: 394 SKPGLVERFELFIVGRETANAFSELIDPVDQRQRLEAQQA 433

[Close]
BLAST of Pay0003778 vs. ExPASy Swiss-Prot
Match: A2C629 (Lysine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9303) OX=59922 GN=lysS PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.2e-04
Identity = 24/40 (60.00%), Postives = 26/40 (65.00%), Query Frame = 0 

Query: 35  SHAGFTERFELFICGRKLANAFSELIDRIYQRMIRRPDQA 75
           S  G  ERFELFI GR+ ANAFSELID + QR      QA
Sbjct: 407 SKPGLVERFELFIVGRETANAFSELIDPLDQRQRLEAQQA 446

[Close]
BLAST of Pay0003778 vs. ExPASy Swiss-Prot
Match: Q7U3A4 (Lysine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313) OX=74547 GN=lysS PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.2e-04
Identity = 24/40 (60.00%), Postives = 26/40 (65.00%), Query Frame = 0 

Query: 35  SHAGFTERFELFICGRKLANAFSELIDRIYQRMIRRPDQA 75
           S  G  ERFELFI GR+ ANAFSELID + QR      QA
Sbjct: 407 SKPGLVERFELFIVGRETANAFSELIDPLDQRQRLEAQQA 446

[Close]
BLAST of Pay0003778 vs. ExPASy Swiss-Prot
Match: A2BZ03 (Lysine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9515) OX=167542 GN=lysS PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.5e-04
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0 

Query: 34  PSHAGFTERFELFICGRKLANAFSELIDRIYQR 67
           P +    +RFELFI GR+LANAFSELID + QR
Sbjct: 398 PKNKEMVQRFELFIAGRELANAFSELIDPVDQR 430

[Close]
BLAST of Pay0003778 vs. ExPASy TrEMBL
Match: A0A1S3BMQ9 (lysine--tRNA ligase-like OS=Cucumis melo OX=3656 GN=LOC103491344 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.8e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MQNLMKPMMVFAQELGDSFYLTSQLTFFQFFHSPSHAGFTERFELFICGRKLANAFSELI 60
          MQNLMKPMMVFAQELGDSFYLTSQLTFFQFFHSPSHAGFTERFELFICGRKLANAFSELI
Sbjct: 1  MQNLMKPMMVFAQELGDSFYLTSQLTFFQFFHSPSHAGFTERFELFICGRKLANAFSELI 60

Query: 61 DRIYQRMIRRPDQATQ 77
          DRIYQRMIRRPDQATQ
Sbjct: 61 DRIYQRMIRRPDQATQ 76

[Close]
BLAST of Pay0003778 vs. ExPASy TrEMBL
Match: A0A5D3DE11 (Lysine--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001100 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.0e-05
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 36  HAGFTERFELFICGRKLANAFSELIDRIYQR 67
           HAGFTERFELFICGR+LANAFSEL D I QR
Sbjct: 485 HAGFTERFELFICGRELANAFSELTDPIDQR 515

[Close]
BLAST of Pay0003778 vs. ExPASy TrEMBL
Match: A0A5A7TFD0 (Lysine--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00900 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.0e-05
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 36  HAGFTERFELFICGRKLANAFSELIDRIYQR 67
           HAGFTERFELFICGR+LANAFSEL D I QR
Sbjct: 485 HAGFTERFELFICGRELANAFSELTDPIDQR 515

[Close]
BLAST of Pay0003778 vs. ExPASy TrEMBL
Match: A0A0A0L1N3 (Lysine--tRNA ligase OS=Cucumis sativus OX=3659 GN=Csa_4G268050 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.0e-05
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 36  HAGFTERFELFICGRKLANAFSELIDRIYQR 67
           HAGFTERFELFICGR+LANAFSEL D I QR
Sbjct: 485 HAGFTERFELFICGRELANAFSELTDPIDQR 515

[Close]
BLAST of Pay0003778 vs. ExPASy TrEMBL
Match: A0A1S3BP13 (Lysyl-tRNA synthetase OS=Cucumis melo OX=3656 GN=LOC103491634 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.0e-05
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 36  HAGFTERFELFICGRKLANAFSELIDRIYQR 67
           HAGFTERFELFICGR+LANAFSEL D I QR
Sbjct: 416 HAGFTERFELFICGRELANAFSELTDPIDQR 446

[Close]
BLAST of Pay0003778 vs. NCBI nr
Match: XP_008449470.1 (PREDICTED: lysine--tRNA ligase-like [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 3.8e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MQNLMKPMMVFAQELGDSFYLTSQLTFFQFFHSPSHAGFTERFELFICGRKLANAFSELI 60
          MQNLMKPMMVFAQELGDSFYLTSQLTFFQFFHSPSHAGFTERFELFICGRKLANAFSELI
Sbjct: 1  MQNLMKPMMVFAQELGDSFYLTSQLTFFQFFHSPSHAGFTERFELFICGRKLANAFSELI 60

Query: 61 DRIYQRMIRRPDQATQ 77
          DRIYQRMIRRPDQATQ
Sbjct: 61 DRIYQRMIRRPDQATQ 76

[Close]
BLAST of Pay0003778 vs. NCBI nr
Match: XP_008449893.1 (PREDICTED: lysine--tRNA ligase, chloroplastic/mitochondrial isoform X3 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 8.2e-05
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 36  HAGFTERFELFICGRKLANAFSELIDRIYQR 67
           HAGFTERFELFICGR+LANAFSEL D I QR
Sbjct: 416 HAGFTERFELFICGRELANAFSELTDPIDQR 446

[Close]
BLAST of Pay0003778 vs. NCBI nr
Match: XP_004149642.1 (lysine--tRNA ligase, chloroplastic/mitochondrial [Cucumis sativus] >KGN54021.1 hypothetical protein Csa_021676 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 8.2e-05
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 36  HAGFTERFELFICGRKLANAFSELIDRIYQR 67
           HAGFTERFELFICGR+LANAFSEL D I QR
Sbjct: 485 HAGFTERFELFICGRELANAFSELTDPIDQR 515

[Close]
BLAST of Pay0003778 vs. NCBI nr
Match: TYK21738.1 (lysine--tRNA ligase [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 8.2e-05
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 36  HAGFTERFELFICGRKLANAFSELIDRIYQR 67
           HAGFTERFELFICGR+LANAFSEL D I QR
Sbjct: 485 HAGFTERFELFICGRELANAFSELTDPIDQR 515

[Close]
BLAST of Pay0003778 vs. NCBI nr
Match: XP_008449891.1 (PREDICTED: lysine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 8.2e-05
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 36  HAGFTERFELFICGRKLANAFSELIDRIYQR 67
           HAGFTERFELFICGR+LANAFSEL D I QR
Sbjct: 485 HAGFTERFELFICGRELANAFSELTDPIDQR 515

[Close]
BLAST of Pay0003778 vs. TAIR 10
Match: AT3G13490.1 (Lysyl-tRNA synthetase, class II )

HSP 1 Score: 50.8 bits (120), Expect = 5.5e-07
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 36  HAGFTERFELFICGRKLANAFSELIDRIYQR 67
           +AG TERFELFICGR++ANAFSEL D + QR
Sbjct: 484 NAGLTERFELFICGREMANAFSELTDPVDQR 514

The following BLAST results are available for this feature:
BLAST of Pay0003778 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LJE27.7e-0674.19Lysine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
Q3B0J92.5e-0460.00Lysine--tRNA ligase OS=Synechococcus sp. (strain CC9902) OX=316279 GN=lysS PE=3 ... [more]
A2C6293.2e-0460.00Lysine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9303) OX=59922 GN=lys... [more]
Q7U3A43.2e-0460.00Lysine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313) OX=74547 GN=lys... [more]
A2BZ035.5e-0463.64Lysine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9515) OX=167542 GN=ly... [more]
BLAST of Pay0003778 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BMQ91.8e-34100.00lysine--tRNA ligase-like OS=Cucumis melo OX=3656 GN=LOC103491344 PE=4 SV=1[more]
A0A5D3DE114.0e-0587.10Lysine--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G... [more]
A0A5A7TFD04.0e-0587.10Lysine--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G... [more]
A0A0A0L1N34.0e-0587.10Lysine--tRNA ligase OS=Cucumis sativus OX=3659 GN=Csa_4G268050 PE=3 SV=1[more]
A0A1S3BP134.0e-0587.10Lysyl-tRNA synthetase OS=Cucumis melo OX=3656 GN=LOC103491634 PE=3 SV=1[more]
BLAST of Pay0003778 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449470.13.8e-34100.00PREDICTED: lysine--tRNA ligase-like [Cucumis melo][more]
XP_008449893.18.2e-0587.10PREDICTED: lysine--tRNA ligase, chloroplastic/mitochondrial isoform X3 [Cucumis ... [more]
XP_004149642.18.2e-0587.10lysine--tRNA ligase, chloroplastic/mitochondrial [Cucumis sativus] >KGN54021.1 h... [more]
TYK21738.18.2e-0587.10lysine--tRNA ligase [Cucumis melo var. makuwa][more]
XP_008449891.18.2e-0587.10PREDICTED: lysine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [Cucumis ... [more]
BLAST of Pay0003778 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G13490.15.5e-0774.19Lysyl-tRNA synthetase, class II [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0003778.1Pay0003778.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006418 tRNA aminoacylation for protein translation
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding