Pay0003609 (gene) Melon (Payzawat) v1

Overview


Name	Pay0003609
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Gag-proteinase polyprotein
Location	chr06: 17077118 .. 17078102 (-)
RNA-Seq Expression	Pay0003609
Synteny	Pay0003609

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTTCTTCATTAAGATGTTAGATGGAAAAGCTTGGAAAGCTCTTGTGGTGGGTTATGATCCTCTTATGATTACAGTGAATGGTGTTTCGGTTCCTAAACCTGAAGTTGATTGGACCGATGCTGAAGAGCAAGCATCCGTTGGGAAGGCCAGAGCACTTAACGCGATATTCAATGGTATTGACCTGAACGTTTTCAAGTTAATAAATTCTTGTAGTACAACCAAAGAAGCTTGGAAAACCTTGGAGGTTGCATATGAAGGCACTTCCAAAGTAAAGATTTTAAGATTACAGTTGATAACATCTAAGTTTGAGGCATTAAGAATGACCGAGGATGAATCAGTGTCTGACTACAATAAGAGAGTACTTGAAATCGCAAATGAATCCTTGTTGCTCGGTGAAAAGATACCTGACTCTAAAATAGTGCGGAAAGTACTTCGATCCTTGCCCAGGAAATTTGATATGAAAGTTACTGCCATTGAGGAAGCCCATGACATTACGACACTGAAACTTGATGAATTGTTTGGTTCGTTGCTTACGTTTGAAATGGCCACTGCCGATAGAGAAAGTAAGAAAGGCAAGAGAATTGCTTTTAAATCCACACATGTAGATAAGGAGGCTGTAAGTGATACTGAAGCAAACATGGATGAGTCAATAGCCTTATTAACAAAACAATTCACAAACGTCCTTCGAAAATTAAAAAATACGAATGCCACAGGTATGAATGCGCAAACTTCCAATCAGTATCGAAAAAGAAATGATGATAGTCTTACCAGGAGGAATAATGAAAATTCTGATAGAAGAAGTGATGGTTATATCAAGAAAAAAGGAAGGTGACAGAAGGATTTTCAAGTGTAGAGAATGTGGAGGAGTTGGTCATTATCAAGCAGAATGTCCCACATTCCTGAGAAAACAGAAGAAAAACTTTTGTGTCACACTGTCAATGAAGAATCTGGTGATAGTAGAGATGATGACTGCAACATAA

mRNA sequence

ATGATCTTCTTCATTAAGATGTTAGATGGAAAAGCTTGGAAAGCTCTTGTGGTGGGTTATGATCCTCTTATGATTACAGTGAATGGTGTTTCGGTTCCTAAACCTGAAGTTGATTGGACCGATGCTGAAGAGCAAGCATCCGTTGGGAAGGCCAGAGCACTTAACGCGATATTCAATGGTATTGACCTGAACGTTTTCAAGTTAATAAATTCTTGTAGTACAACCAAAGAAGCTTGGAAAACCTTGGAGGTTGCATATGAAGGCACTTCCAAAGTAAAGATTTTAAGATTACAGTTGATAACATCTAAGTTTGAGGCATTAAGAATGACCGAGGATGAATCAGTGTCTGACTACAATAAGAGAGTACTTGAAATCGCAAATGAATCCTTGTTGCTCGGTGAAAAGATACCTGACTCTAAAATAGTGCGGAAAGTACTTCGATCCTTGCCCAGGAAATTTGATATGAAAGTTACTGCCATTGAGGAAGCCCATGACATTACGACACTGAAACTTGATGAATTGTTTGGTTCGTTGCTTACGTTTGAAATGGCCACTGCCGATAGAGAAAGTAAGAAAGGCAAGAGAATTGCTTTTAAATCCACACATGTAGATAAGGAGGCTGTAAGTGATACTGAAGCAAACATGGATGAGTCAATAGCCTTATTAACAAAACAATTCACAAACGTCCTTCGAAAATTAAAAAATACGAATGCCACAGGTATGAATGCAAGGATTTTCAAGTGTAGAGAATGTGGAGGAGTTGGTCATTATCAAGCAGAATGTCCCACATTCCTGAGAAAACAGAAGAAAAACTTTTGTGTCACACTGTCAATGAAGAATCTGGTGATAGTAGAGATGATGACTGCAACATAA

Coding sequence (CDS)

ATGATCTTCTTCATTAAGATGTTAGATGGAAAAGCTTGGAAAGCTCTTGTGGTGGGTTATGATCCTCTTATGATTACAGTGAATGGTGTTTCGGTTCCTAAACCTGAAGTTGATTGGACCGATGCTGAAGAGCAAGCATCCGTTGGGAAGGCCAGAGCACTTAACGCGATATTCAATGGTATTGACCTGAACGTTTTCAAGTTAATAAATTCTTGTAGTACAACCAAAGAAGCTTGGAAAACCTTGGAGGTTGCATATGAAGGCACTTCCAAAGTAAAGATTTTAAGATTACAGTTGATAACATCTAAGTTTGAGGCATTAAGAATGACCGAGGATGAATCAGTGTCTGACTACAATAAGAGAGTACTTGAAATCGCAAATGAATCCTTGTTGCTCGGTGAAAAGATACCTGACTCTAAAATAGTGCGGAAAGTACTTCGATCCTTGCCCAGGAAATTTGATATGAAAGTTACTGCCATTGAGGAAGCCCATGACATTACGACACTGAAACTTGATGAATTGTTTGGTTCGTTGCTTACGTTTGAAATGGCCACTGCCGATAGAGAAAGTAAGAAAGGCAAGAGAATTGCTTTTAAATCCACACATGTAGATAAGGAGGCTGTAAGTGATACTGAAGCAAACATGGATGAGTCAATAGCCTTATTAACAAAACAATTCACAAACGTCCTTCGAAAATTAAAAAATACGAATGCCACAGGTATGAATGCAAGGATTTTCAAGTGTAGAGAATGTGGAGGAGTTGGTCATTATCAAGCAGAATGTCCCACATTCCTGAGAAAACAGAAGAAAAACTTTTGTGTCACACTGTCAATGAAGAATCTGGTGATAGTAGAGATGATGACTGCAACATAA

Protein sequence

MIFFIKMLDGKAWKALVVGYDPLMITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNGIDLNVFKLINSCSTTKEAWKTLEVAYEGTSKVKILRLQLITSKFEALRMTEDESVSDYNKRVLEIANESLLLGEKIPDSKIVRKVLRSLPRKFDMKVTAIEEAHDITTLKLDELFGSLLTFEMATADRESKKGKRIAFKSTHVDKEAVSDTEANMDESIALLTKQFTNVLRKLKNTNATGMNARIFKCRECGGVGHYQAECPTFLRKQKKNFCVTLSMKNLVIVEMMTAT

Homology

[Close]

BLAST of Pay0003609 vs. ExPASy TrEMBL
Match: A0A5A7TS54 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005300 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.9e-128
Identity = 248/314 (78.98%), Postives = 257/314 (81.85%), Query Frame = 0


Query: 1   MIFFIKMLDGKAWKALVVGYDPLMITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNG 60
           MIFFIK LDGKAW+A++ GYDP MI VNGVSVPKPEVDWTDAEEQASVG  RALNAIFNG
Sbjct: 11  MIFFIKTLDGKAWRAIMAGYDPPMIIVNGVSVPKPEVDWTDAEEQASVGNVRALNAIFNG 70

Query: 61  IDLNVFKLINSCSTTKEAWKTLEVAYEGTSKVKILRLQLITSKFEALRMTEDESVSDYNK 120
           +DLNVFKLINSCS TKEAWKTLEVAYEGTSKVKI RLQLITSKFEALRMTEDESV DYNK
Sbjct: 71  VDLNVFKLINSCSITKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDESVLDYNK 130

Query: 121 RVLEIANESLLLGEKIPDSKIVRKVLRSLPRKFDMKVTAIEEAHDITTLKLDELFGSLLT 180
           RVLEIANESLLL EKIPDSKI+RKVLRSLP+KFDMKV  IEEAHDITTLKLDELFGSLL 
Sbjct: 131 RVLEIANESLLLSEKIPDSKIMRKVLRSLPKKFDMKVNTIEEAHDITTLKLDELFGSLLM 190

Query: 181 FEMATADRESKKGKRIAFKSTHVDKEAVSDTEANMDESIALLTKQFTNVLRKLKNTNATG 240
           FEMATADRESKKGKRIAFKSTHV +EAVSDTEANMDESIALLTKQFTN LRKLKNTN TG
Sbjct: 191 FEMATADRESKKGKRIAFKSTHVSEEAVSDTEANMDESIALLTKQFTNALRKLKNTNLTG 250

Query: 241 MNA-------------------------------------RIFKCRECGGVGHYQAECPT 278
            NA                                     RI +CREC GVGHYQAECPT
Sbjct: 251 TNAQTSNQYQRRNDDGITRRKNENFDRRSDGYIKKKEGDRRILRCRECRGVGHYQAECPT 310

[Close]

BLAST of Pay0003609 vs. ExPASy TrEMBL
Match: A0A5A7V769 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00660 PE=4 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 2.5e-124
Identity = 236/244 (96.72%), Postives = 239/244 (97.95%), Query Frame = 0


Query: 1   MIFFIKMLDGKAWKALVVGYDPLMITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNG 60
           MIFFIKMLDGKAWKALV GYDP MITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNG
Sbjct: 1   MIFFIKMLDGKAWKALVAGYDPFMITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNG 60

Query: 61  IDLNVFKLINSCSTTKEAWKTLEVAYEGTSKVKILRLQLITSKFEALRMTEDESVSDYNK 120
           IDLNVFKLINSCSTTKEAWKTLEVAYEGTSKVKILRLQLITSKFEALRMTEDESVSDYNK
Sbjct: 61  IDLNVFKLINSCSTTKEAWKTLEVAYEGTSKVKILRLQLITSKFEALRMTEDESVSDYNK 120

Query: 121 RVLEIANESLLLGEKIPDSKIVRKVLRSLPRKFDMKVTAIEEAHDITTLKLDELFGSLLT 180
           RVLEIANESLLLGEKIPDSKIVRK LRSLPRKFDMKVTAIEEAHDIT+LKLDELFGSLLT
Sbjct: 121 RVLEIANESLLLGEKIPDSKIVRKELRSLPRKFDMKVTAIEEAHDITSLKLDELFGSLLT 180

Query: 181 FEMATADRESKKGKRIAFKSTHVDKEAVSDTEANMDESIALLTKQFTNVLRKLKNTNATG 240
           FEMATADRESKKGK IAFKSTHVD+EAVSDTEANMDESIALLTKQFTNVLRKLKNTNATG
Sbjct: 181 FEMATADRESKKGKEIAFKSTHVDEEAVSDTEANMDESIALLTKQFTNVLRKLKNTNATG 240

Query: 241 MNAR 245
           MN +
Sbjct: 241 MNGQ 244

[Close]

BLAST of Pay0003609 vs. ExPASy TrEMBL
Match: A0A5D3B8M8 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00680 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.8e-122
Identity = 242/314 (77.07%), Postives = 251/314 (79.94%), Query Frame = 0


Query: 1   MIFFIKMLDGKAWKALVVGYDPLMITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNG 60
           MIFFIK LD KAW+ALV GYD  MITVNG+SVPKPEVDWTDAE QASVG ARALNAIFN 
Sbjct: 1   MIFFIKTLDEKAWRALVAGYDSPMITVNGISVPKPEVDWTDAEVQASVGNARALNAIFNS 60

Query: 61  IDLNVFKLINSCSTTKEAWKTLEVAYEGTSKVKILRLQLITSKFEALRMTEDESVSDYNK 120
           +DLNVFKLINSCSTTKEAWKTLEVAYE  SKVKI RL LITSKF+ALRMTEDESV DYNK
Sbjct: 61  VDLNVFKLINSCSTTKEAWKTLEVAYEDISKVKISRLLLITSKFKALRMTEDESVFDYNK 120

Query: 121 RVLEIANESLLLGEKIPDSKIVRKVLRSLPRKFDMKVTAIEEAHDITTLKLDELFGSLLT 180
           RVLEI NESLLLGEKIPDSKIVRKVLRSLPRKFDMKV AIEEAHDITTLKL+ELFGS  T
Sbjct: 121 RVLEITNESLLLGEKIPDSKIVRKVLRSLPRKFDMKVIAIEEAHDITTLKLNELFGSFRT 180

Query: 181 FEMATADRESKKGKRIAFKSTHVDKEAVSDTEANMDESIALLTKQFTNVLRKLKNTNATG 240
           FEMATADRESKK K I F STHV ++AVSDTEANMDESIALLTKQFTN LRKLKNT ATG
Sbjct: 181 FEMATADRESKKVKGIVFISTHVGEKAVSDTEANMDESIALLTKQFTNALRKLKNTKATG 240

Query: 241 MNA-------------------------------------RIFKCRECGGVGHYQAECPT 278
           MNA                                     RIF+CRECGGVGHYQ ECPT
Sbjct: 241 MNAQTSNPYRRRKGDDTTRRNNENSDRRSDGYIKKKKGDIRIFRCRECGGVGHYQPECPT 300

[Close]

BLAST of Pay0003609 vs. ExPASy TrEMBL
Match: A0A5A7TFN0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00220 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.5e-121
Identity = 236/300 (78.67%), Postives = 248/300 (82.67%), Query Frame = 0


Query: 1   MIFFIKMLDGKAWKALVVGYDPLMITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNG 60
           MIFFIK LDGKAW+ALV GYDP MITVNGVSVPKPEVDWTDAEEQASVG ARALN IFNG
Sbjct: 1   MIFFIKTLDGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDAEEQASVGNARALNVIFNG 60

Query: 61  IDLNVFKLINSCSTTKEAWKTLEVAYEGTSKVKILRLQLITSKFEALRMTEDESVSDYNK 120
           +DLNVFKLI  CS  KEAWKTLEVAYEGTSKVKI RLQLITSKFEALRMTEDESVSDYNK
Sbjct: 61  VDLNVFKLIKFCSRAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDESVSDYNK 120

Query: 121 RVLEIANESLLLGEKIPDSKIVRKVLRSLPRKFDMKVTAIEEAHDITTLKLDELFGSLLT 180
           RVLEIANESLLLGEKIP+SKIVRKVLRSLPRKF MKV AIEEAHDITTLKLDE FGSLLT
Sbjct: 121 RVLEIANESLLLGEKIPNSKIVRKVLRSLPRKFGMKVAAIEEAHDITTLKLDEFFGSLLT 180

Query: 181 FEMATADRESKKGKRIAFKSTHVDKEAVSDTEANMDESIALLTKQFTNVLRKLKNTNATG 240
           F+MATADRESKKGK IAFKSTHV  EA  D EANMD+SIALLTK FTN L + K +    
Sbjct: 181 FKMATADRESKKGKVIAFKSTHVSVEAGCDIEANMDDSIALLTKLFTNALSEFKKSECHR 240

Query: 241 MN------------------ARIFKCRECGGVGHYQAECPTFLRKQKKNFCVTLSMKNLV 283
            N                   ++F+CR+CGGVGHYQAECPTFLRKQKKNF VTLS +  V
Sbjct: 241 RNNENSDRRSDGYLKKKEGDRKLFRCRKCGGVGHYQAECPTFLRKQKKNFRVTLSNEEYV 300

[Close]

BLAST of Pay0003609 vs. ExPASy TrEMBL
Match: A0A5A7SWB7 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00710 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 4.1e-119
Identity = 234/300 (78.00%), Postives = 250/300 (83.33%), Query Frame = 0


Query: 1   MIFFIKMLDGKAWKALVVGYDPLMITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNG 60
           MIFFIKMLDGKAW+ALV  YDP MI VNGVS+PK EVDWTDAEEQASVG ARALNAIFN 
Sbjct: 28  MIFFIKMLDGKAWRALVADYDPPMIIVNGVSIPKSEVDWTDAEEQASVGNARALNAIFNS 87

Query: 61  IDLNVFKLINSCSTTKEAWKTLEVAY-----EGTSKVKIL-------RLQLITSKFEALR 120
           +DLNVFKLINSC+  KEAWKTLEV++         K K L         + ITSKFEAL+
Sbjct: 88  VDLNVFKLINSCNAAKEAWKTLEVSFMIGLARDFQKEKKLWIKEEFENYKAITSKFEALK 147

Query: 121 MTEDESVSDYNKRVLEIANESLLLGEKIPDSKIVRKVLRSLPRKFDMKVTAIEEAHDITT 180
           MTEDESVSDYNKRVLEIANESLLLGEKIPDSKIV+KVLRSLPRKFDMKVTAIEEAHDITT
Sbjct: 148 MTEDESVSDYNKRVLEIANESLLLGEKIPDSKIVQKVLRSLPRKFDMKVTAIEEAHDITT 207

Query: 181 LKLDELFGSLLTFEMATADRESKKGKRIAFKSTHVDKEAVSDTEANMDESIALLTKQFTN 240
           L+LDELFGSLLTFEMATADRESKKGK IAFKSTHVD+EAVSDTEANMDESIALLT+QFTN
Sbjct: 208 LRLDELFGSLLTFEMATADRESKKGKGIAFKSTHVDEEAVSDTEANMDESIALLTEQFTN 267

Query: 241 VLRKLKNTNATGMNA-----------RIFKCRECGGVGHYQAECPTFLRKQKKNFCVTLS 278
             +KLKN NAT   +           RIF+CRECG +GHYQAECPTFLRKQ KNFCVTLS
Sbjct: 268 AFQKLKNMNATNRRSDGYIKKKEGDRRIFRCRECGSIGHYQAECPTFLRKQ-KNFCVTLS 326

[Close]

BLAST of Pay0003609 vs. NCBI nr
Match: KAA0045980.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 468.0 bits (1203), Expect = 5.9e-128
Identity = 248/314 (78.98%), Postives = 257/314 (81.85%), Query Frame = 0


Query: 1   MIFFIKMLDGKAWKALVVGYDPLMITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNG 60
           MIFFIK LDGKAW+A++ GYDP MI VNGVSVPKPEVDWTDAEEQASVG  RALNAIFNG
Sbjct: 11  MIFFIKTLDGKAWRAIMAGYDPPMIIVNGVSVPKPEVDWTDAEEQASVGNVRALNAIFNG 70

Query: 61  IDLNVFKLINSCSTTKEAWKTLEVAYEGTSKVKILRLQLITSKFEALRMTEDESVSDYNK 120
           +DLNVFKLINSCS TKEAWKTLEVAYEGTSKVKI RLQLITSKFEALRMTEDESV DYNK
Sbjct: 71  VDLNVFKLINSCSITKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDESVLDYNK 130

Query: 121 RVLEIANESLLLGEKIPDSKIVRKVLRSLPRKFDMKVTAIEEAHDITTLKLDELFGSLLT 180
           RVLEIANESLLL EKIPDSKI+RKVLRSLP+KFDMKV  IEEAHDITTLKLDELFGSLL 
Sbjct: 131 RVLEIANESLLLSEKIPDSKIMRKVLRSLPKKFDMKVNTIEEAHDITTLKLDELFGSLLM 190

Query: 181 FEMATADRESKKGKRIAFKSTHVDKEAVSDTEANMDESIALLTKQFTNVLRKLKNTNATG 240
           FEMATADRESKKGKRIAFKSTHV +EAVSDTEANMDESIALLTKQFTN LRKLKNTN TG
Sbjct: 191 FEMATADRESKKGKRIAFKSTHVSEEAVSDTEANMDESIALLTKQFTNALRKLKNTNLTG 250

Query: 241 MNA-------------------------------------RIFKCRECGGVGHYQAECPT 278
            NA                                     RI +CREC GVGHYQAECPT
Sbjct: 251 TNAQTSNQYQRRNDDGITRRKNENFDRRSDGYIKKKEGDRRILRCRECRGVGHYQAECPT 310

[Close]

BLAST of Pay0003609 vs. NCBI nr
Match: KAA0063428.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK11689.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 454.9 bits (1169), Expect = 5.2e-124
Identity = 236/244 (96.72%), Postives = 239/244 (97.95%), Query Frame = 0


Query: 1   MIFFIKMLDGKAWKALVVGYDPLMITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNG 60
           MIFFIKMLDGKAWKALV GYDP MITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNG
Sbjct: 1   MIFFIKMLDGKAWKALVAGYDPFMITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNG 60

Query: 61  IDLNVFKLINSCSTTKEAWKTLEVAYEGTSKVKILRLQLITSKFEALRMTEDESVSDYNK 120
           IDLNVFKLINSCSTTKEAWKTLEVAYEGTSKVKILRLQLITSKFEALRMTEDESVSDYNK
Sbjct: 61  IDLNVFKLINSCSTTKEAWKTLEVAYEGTSKVKILRLQLITSKFEALRMTEDESVSDYNK 120

Query: 121 RVLEIANESLLLGEKIPDSKIVRKVLRSLPRKFDMKVTAIEEAHDITTLKLDELFGSLLT 180
           RVLEIANESLLLGEKIPDSKIVRK LRSLPRKFDMKVTAIEEAHDIT+LKLDELFGSLLT
Sbjct: 121 RVLEIANESLLLGEKIPDSKIVRKELRSLPRKFDMKVTAIEEAHDITSLKLDELFGSLLT 180

Query: 181 FEMATADRESKKGKRIAFKSTHVDKEAVSDTEANMDESIALLTKQFTNVLRKLKNTNATG 240
           FEMATADRESKKGK IAFKSTHVD+EAVSDTEANMDESIALLTKQFTNVLRKLKNTNATG
Sbjct: 181 FEMATADRESKKGKEIAFKSTHVDEEAVSDTEANMDESIALLTKQFTNVLRKLKNTNATG 240

Query: 241 MNAR 245
           MN +
Sbjct: 241 MNGQ 244

[Close]

BLAST of Pay0003609 vs. NCBI nr
Match: KAA0033544.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYJ95643.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 448.7 bits (1153), Expect = 3.7e-122
Identity = 242/314 (77.07%), Postives = 251/314 (79.94%), Query Frame = 0


Query: 1   MIFFIKMLDGKAWKALVVGYDPLMITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNG 60
           MIFFIK LD KAW+ALV GYD  MITVNG+SVPKPEVDWTDAE QASVG ARALNAIFN 
Sbjct: 1   MIFFIKTLDEKAWRALVAGYDSPMITVNGISVPKPEVDWTDAEVQASVGNARALNAIFNS 60

Query: 61  IDLNVFKLINSCSTTKEAWKTLEVAYEGTSKVKILRLQLITSKFEALRMTEDESVSDYNK 120
           +DLNVFKLINSCSTTKEAWKTLEVAYE  SKVKI RL LITSKF+ALRMTEDESV DYNK
Sbjct: 61  VDLNVFKLINSCSTTKEAWKTLEVAYEDISKVKISRLLLITSKFKALRMTEDESVFDYNK 120

Query: 121 RVLEIANESLLLGEKIPDSKIVRKVLRSLPRKFDMKVTAIEEAHDITTLKLDELFGSLLT 180
           RVLEI NESLLLGEKIPDSKIVRKVLRSLPRKFDMKV AIEEAHDITTLKL+ELFGS  T
Sbjct: 121 RVLEITNESLLLGEKIPDSKIVRKVLRSLPRKFDMKVIAIEEAHDITTLKLNELFGSFRT 180

Query: 181 FEMATADRESKKGKRIAFKSTHVDKEAVSDTEANMDESIALLTKQFTNVLRKLKNTNATG 240
           FEMATADRESKK K I F STHV ++AVSDTEANMDESIALLTKQFTN LRKLKNT ATG
Sbjct: 181 FEMATADRESKKVKGIVFISTHVGEKAVSDTEANMDESIALLTKQFTNALRKLKNTKATG 240

Query: 241 MNA-------------------------------------RIFKCRECGGVGHYQAECPT 278
           MNA                                     RIF+CRECGGVGHYQ ECPT
Sbjct: 241 MNAQTSNPYRRRKGDDTTRRNNENSDRRSDGYIKKKKGDIRIFRCRECGGVGHYQPECPT 300

[Close]

BLAST of Pay0003609 vs. NCBI nr
Match: KAA0040215.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07877.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 445.7 bits (1145), Expect = 3.1e-121
Identity = 236/300 (78.67%), Postives = 248/300 (82.67%), Query Frame = 0


Query: 1   MIFFIKMLDGKAWKALVVGYDPLMITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNG 60
           MIFFIK LDGKAW+ALV GYDP MITVNGVSVPKPEVDWTDAEEQASVG ARALN IFNG
Sbjct: 1   MIFFIKTLDGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDAEEQASVGNARALNVIFNG 60

Query: 61  IDLNVFKLINSCSTTKEAWKTLEVAYEGTSKVKILRLQLITSKFEALRMTEDESVSDYNK 120
           +DLNVFKLI  CS  KEAWKTLEVAYEGTSKVKI RLQLITSKFEALRMTEDESVSDYNK
Sbjct: 61  VDLNVFKLIKFCSRAKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMTEDESVSDYNK 120

Query: 121 RVLEIANESLLLGEKIPDSKIVRKVLRSLPRKFDMKVTAIEEAHDITTLKLDELFGSLLT 180
           RVLEIANESLLLGEKIP+SKIVRKVLRSLPRKF MKV AIEEAHDITTLKLDE FGSLLT
Sbjct: 121 RVLEIANESLLLGEKIPNSKIVRKVLRSLPRKFGMKVAAIEEAHDITTLKLDEFFGSLLT 180

Query: 181 FEMATADRESKKGKRIAFKSTHVDKEAVSDTEANMDESIALLTKQFTNVLRKLKNTNATG 240
           F+MATADRESKKGK IAFKSTHV  EA  D EANMD+SIALLTK FTN L + K +    
Sbjct: 181 FKMATADRESKKGKVIAFKSTHVSVEAGCDIEANMDDSIALLTKLFTNALSEFKKSECHR 240

Query: 241 MN------------------ARIFKCRECGGVGHYQAECPTFLRKQKKNFCVTLSMKNLV 283
            N                   ++F+CR+CGGVGHYQAECPTFLRKQKKNF VTLS +  V
Sbjct: 241 RNNENSDRRSDGYLKKKEGDRKLFRCRKCGGVGHYQAECPTFLRKQKKNFRVTLSNEEYV 300

[Close]

BLAST of Pay0003609 vs. NCBI nr
Match: TYJ95661.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 437.6 bits (1124), Expect = 8.5e-119
Identity = 234/300 (78.00%), Postives = 250/300 (83.33%), Query Frame = 0


Query: 1   MIFFIKMLDGKAWKALVVGYDPLMITVNGVSVPKPEVDWTDAEEQASVGKARALNAIFNG 60
           MIFFIKMLDGKAW+ALV  YDP MI VNGVS+PK EVDWTDAEEQASVG ARALNAIFN 
Sbjct: 28  MIFFIKMLDGKAWRALVADYDPPMIIVNGVSIPKSEVDWTDAEEQASVGNARALNAIFNS 87

Query: 61  IDLNVFKLINSCSTTKEAWKTLEVAY-----EGTSKVKIL-------RLQLITSKFEALR 120
           +DLNVFKLINSC+  KEAWKTLEV++         K K L         + ITSKFEAL+
Sbjct: 88  VDLNVFKLINSCNAAKEAWKTLEVSFMIGLARDFQKEKKLWIKEEFENYKAITSKFEALK 147

Query: 121 MTEDESVSDYNKRVLEIANESLLLGEKIPDSKIVRKVLRSLPRKFDMKVTAIEEAHDITT 180
           MTEDESVSDYNKRVLEIANESLLLGEKIPDSKIV+KVLRSLPRKFDMKVTAIEEAHDITT
Sbjct: 148 MTEDESVSDYNKRVLEIANESLLLGEKIPDSKIVQKVLRSLPRKFDMKVTAIEEAHDITT 207

Query: 181 LKLDELFGSLLTFEMATADRESKKGKRIAFKSTHVDKEAVSDTEANMDESIALLTKQFTN 240
           L+LDELFGSLLTFEMATADRESKKGK IAFKSTHVD+EAVSDTEANMDESIALLT+QFTN
Sbjct: 208 LRLDELFGSLLTFEMATADRESKKGKGIAFKSTHVDEEAVSDTEANMDESIALLTEQFTN 267

Query: 241 VLRKLKNTNATGMNA-----------RIFKCRECGGVGHYQAECPTFLRKQKKNFCVTLS 278
             +KLKN NAT   +           RIF+CRECG +GHYQAECPTFLRKQ KNFCVTLS
Sbjct: 268 AFQKLKNMNATNRRSDGYIKKKEGDRRIFRCRECGSIGHYQAECPTFLRKQ-KNFCVTLS 326

The following BLAST results are available for this feature:

BLAST of Pay0003609 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0003609 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TS54	2.9e-128	78.98	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A5A7V769	2.5e-124	96.72	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G...	[more]
A0A5D3B8M8	1.8e-122	77.07	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7TFN0	1.5e-121	78.67	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933...	[more]
A0A5A7SWB7	4.1e-119	78.00	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]

BLAST of Pay0003609 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045980.1	5.9e-128	78.98	gag-proteinase polyprotein [Cucumis melo var. makuwa]	[more]
KAA0063428.1	5.2e-124	96.72	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK11689.1 gag-pol polyprotein [...	[more]
KAA0033544.1	3.7e-122	77.07	gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYJ95643.1 gag-proteinase...	[more]
KAA0040215.1	3.1e-121	78.67	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07877.1 gag-pol polyprotein [...	[more]
TYJ95661.1	8.5e-119	78.00	gag-proteinase polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0003609 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 247..263 e-value: 0.0077 score: 24.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 247..262 score: 9.141752
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 50..185 e-value: 4.4E-26 score: 91.3
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 33..272
None	No IPR available	PANTHER	PTHR34676:SF4	OS06G0684500 PROTEIN	coord: 33..272
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 246..271

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0003609.1	Pay0003609.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding