Pay0003471 (gene) Melon (Payzawat) v1

Overview


Name	Pay0003471
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Unknown protein
Location	chr03: 24030867 .. 24032861 (-)
RNA-Seq Expression	Pay0003471
Synteny	Pay0003471

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACTTTTAAATATTAAGTACCAAACTTCATATTTTTTTCTATTACATTCTCTGAAACAGTGAATCTTATCACAATCTGTGTAGCAAAGTAATGGCGCAGGAAAATACTATTAATGAAGAAGTTCATGAATTGGAGGCCGATCCATCCAACAATTCTCTAACTGAAGTATTATTTTCTTTCCTCTAATTTTCTTCTACTGATTATTTGAATATGTACATATAATTTTTGTTCGTACTGATCATTTTTTGTATCTGAATGTGTGGGTAGAATAATTCTCTCTCTCTTTGATCTCATATAGAAGAACATCCTCTGAAAACTTTTGTACCACTGCATCTTTTTTCCACAATGGAAAATAGTTGGCACCTAAGCTTAAAAGTTTTATATACAAGTGGGATAATTTGAAACAAAAGGTATAGACTTCTTTTATATGATATATGAAAGATTTGCAAACCAACAAAGTGGTCTTTTTTTTTGGTTCACGTAATGCATCGATAATTCACGTAATTAAATTTAATTACTCCAAGGTTTGGGATAAGAAGTTGGTTATTATAATCTTTAAGGGTATGTTTGGGGTGGGGTTTTAGGAGGAAAAGAATTAGGAAATTGGGTCAAACCGTGTTTGGCCCAAGGATTATGATAAAGATGGATTAGGGTTATCCTAATCCCTAAATAACCCTATCTTATCCTATTTTTACTTTTTTACAACTCTACATTACCCTACCCAAACAATCCAATCAAAAATTTATTATTGTTTTTTAAATTACTACAATCATAACTCTTCTCCCAAACACATATTACCATAACACTACTATCATAATCCCTCCTCCAAACACATACCATCATAACACTACCTTTCATATTTTCTCTCCCAAACACATATTACCACAACACTACCAATAATAATCTATTCCTCAAACACATATTATCATAATACTAGGATTATCATAATCCTAGGATTATTATAATTCTTTTCTTCCATAACTCTTTCCTTCCCCCAAACACACCCTAATATTGTTGGGTTATAATAGTTTGTCTTTTAAGTGTAAATTATTTTGTTTTGATTATAATAGTATGTGTTTGAAGTTTAAATTACTATTTTAGATTGAGAAGAAAATAGTAGACATCAAAGCAAAAAAAAAAAAGAATATAAATGAGTAAAAATCGAAGCAAATAAGTTTTTTTGAAATAGCGTTTGACCGATGTAGTTATCATAGTGTCTTAGATAACTTTTGTAATGATAAACTGTTGAAGAAATTGGAACTAAATAAAGAGACACACTTGAAAGAAAGAAAGTTTTATTAAAACAATTTACAAATGATGGACACCTTTAGAGAGAACGCTCACTCACTTTCACTCAAATTTCTTACTAACTCTCTTTCTCTCTTCCTCACTTTGCTTACTTGCTTTGATTTTTGTTTGGTCCTCAAATGAGGATCACATCTCTATTTATAGGCATGAATTTCTTGGAGTCCAAGCCAAAAGAGTTCTTTAAAGTTCAACCTATTCTAATATTTATTTACATAATTCTATATATTTCTCTCTTATCCTTATCTAAAAGAATTCTCTAGAATTCTTTATTCTAAAAAATCGCTAAGATATTTTTAGGTTTCTTCTTTAGTTTACATAATTCTAGAATTTTAATATACTCATTTAATATCTCTAGAAGATTCTAGTTAGTGTTGCTATATACTTTAACATAAACATACATCTATTTTTATTCAGGTTCTAACGTCATTACGAACACTGAATAGCATTAAGGACCCTTCATCAGCTGGTCGTGCATTTCCCCAACGCATTGAAAGGAAACCTAAATCCGACGACAGCTTTATTGTCAAGAAGATCAAAAGCATTCGGGCAAAACTGTGTCGTTTTTTTTGTTTGTGCTAAATGACATTTTGCCATTCTTTCCTTGGTTCTTTTCAAGTTTAGAGCATTAGTATATGATGTAGTTTGTTATAAATTAACTTAATATATTCTTCTGTTTTAGCAAGGAT

mRNA sequence

CTACTTTTAAATATTAAGTACCAAACTTCATATTTTTTTCTATTACATTCTCTGAAACAGTGAATCTTATCACAATCTGTGTAGCAAAGTAATGGCGCAGGAAAATACTATTAATGAAGAAGTTCATGAATTGGAGGCCGATCCATCCAACAATTCTCTAACTGAAGTTCTAACGTCATTACGAACACTGAATAGCATTAAGGACCCTTCATCAGCTGGTCGTGCATTTCCCCAACGCATTGAAAGGAAACCTAAATCCGACGACAGCTTTATTGTCAAGAAGATCAAAAGCATTCGGGCAAAACTGTGTCGTTTTTTTTGTTTGTGCTAAATGACATTTTGCCATTCTTTCCTTGGTTCTTTTCAAGTTTAGAGCATTAGTATATGATGTAGTTTGTTATAAATTAACTTAATATATTCTTCTGTTTTAGCAAGGAT

Coding sequence (CDS)

ATGGCGCAGGAAAATACTATTAATGAAGAAGTTCATGAATTGGAGGCCGATCCATCCAACAATTCTCTAACTGAAGTTCTAACGTCATTACGAACACTGAATAGCATTAAGGACCCTTCATCAGCTGGTCGTGCATTTCCCCAACGCATTGAAAGGAAACCTAAATCCGACGACAGCTTTATTGTCAAGAAGATCAAAAGCATTCGGGCAAAACTGTGTCGTTTTTTTTGTTTGTGCTAA

Protein sequence

MAQENTINEEVHELEADPSNNSLTEVLTSLRTLNSIKDPSSAGRAFPQRIERKPKSDDSFIVKKIKSIRAKLCRFFCLC

Homology

[Close]

BLAST of Pay0003471 vs. ExPASy TrEMBL
Match: A0A0A0KFH5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G361210 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.8e-12
Identity = 52/105 (49.52%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 1   MAQENTINEEVHELEADPSNNSLTE-------------------------VLTSLRTLNS 60
           MA+EN INEEVHELE+D SNNS T                           +   +T NS
Sbjct: 1   MAKENIINEEVHELESDDSNNSHTSNDEVYPRKRQNCSHDFVEFGFKRCMSIKGFKTYNS 60

Query: 61  IKDPSSAGRAFPQRIERKPKSDDSFIVKKIKSIRAKLCRF-FCLC 80
            K+ S AGRA P+R +RK KSD+SFIVKKI+S RAKLCRF F +C
Sbjct: 61  RKNYSPAGRALPERPKRKHKSDNSFIVKKIRSTRAKLCRFLFNIC 105

[Close]

BLAST of Pay0003471 vs. NCBI nr
Match: KGN47559.1 (hypothetical protein Csa_019011 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 52/105 (49.52%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 1   MAQENTINEEVHELEADPSNNSLTE-------------------------VLTSLRTLNS 60
           MA+EN INEEVHELE+D SNNS T                           +   +T NS
Sbjct: 1   MAKENIINEEVHELESDDSNNSHTSNDEVYPRKRQNCSHDFVEFGFKRCMSIKGFKTYNS 60

Query: 61  IKDPSSAGRAFPQRIERKPKSDDSFIVKKIKSIRAKLCRF-FCLC 80
            K+ S AGRA P+R +RK KSD+SFIVKKI+S RAKLCRF F +C
Sbjct: 61  RKNYSPAGRALPERPKRKHKSDNSFIVKKIRSTRAKLCRFLFNIC 105

The following BLAST results are available for this feature:

BLAST of Pay0003471 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0003471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFH5	7.8e-12	49.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G361210 PE=4 SV=1	[more]

BLAST of Pay0003471 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47559.1	1.6e-11	49.52	hypothetical protein Csa_019011 [Cucumis sativus]	[more]

BLAST of Pay0003471 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0003471.1	Pay0003471.1	mRNA