Pay0003424 (gene) Melon (Payzawat) v1

Overview
NamePay0003424
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionPol protein
Locationchr06: 29359011 .. 29360667 (+)
RNA-Seq ExpressionPay0003424
SyntenyPay0003424
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACAGCGAAGGTGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGGAAAGTGTCACATTCAGCAGCACTTATTACCCGGCAGGCCCCATTGCATCGGGATCTCGAGCGGGCTGAGATTGCAGTGTCAGTGGGGGCAGTTACTGTGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAGAGGATCATCGATGCTCAGAGTAACGATCCTTATCTGTTGAGAACGTGGCCTAGCAGAGGCAGGGCAAACGGCTGAGTTCTCGTTATCCTCTGATGGTGGACTGTTGTTTGAGGGACGCCTCTGTGTTCCGTCAGATTGTGCGGTTAAGACAGAATTATTATCTGAGGCGCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACCTGAAGCGAGTTTATTGGTGGCGTAACATGAAGAGGGAAGTAGCAGAATTTGTTAGTAAATGCTTGGTGTGCCAACAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAGAACGTGTCCATGGATTTCATTACAGGGCTACCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAGTCAGCGCACTTTGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTGCATTTGATGGAGTTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCTGTACGGCAGATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCAATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTACCTCCATCACTCTCGGCAGTCCATGATGTGTTTCACATTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGACGAGAACTTGAGTTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAACAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA

mRNA sequence

ATGAGACAGCGAAGGTGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGGAAAGTGTCACATTCAGCAGCACTTATTACCCGGCAGGCCCCATTGCATCGGGATCTCGAGCGGGCTGAGATTGCAGTGTCAGGACGCCTCTGTGTTCCGTCAGATTGTGCGGTTAAGACAGAATTATTATCTGAGGCGCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGACGAGAACTTGAGTTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAACAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA

Coding sequence (CDS)

ATGAGACAGCGAAGGTGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGGAAAGTGTCACATTCAGCAGCACTTATTACCCGGCAGGCCCCATTGCATCGGGATCTCGAGCGGGCTGAGATTGCAGTGTCAGGACGCCTCTGTGTTCCGTCAGATTGTGCGGTTAAGACAGAATTATTATCTGAGGCGCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGACGAGAACTTGAGTTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAACAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA

Protein sequence

MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSGRLCVPSDCAVKTELLSEAHSSPFSMHPGSTKMKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Homology
BLAST of Pay0003424 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 18/30 (60.00%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 4   RRWLELVKDYDCEILYHPGKANVVADALSR 34
           +RW   +++Y+CE++Y PGK+NVVADALSR
Sbjct: 525 KRWKARIEEYNCELIYKPGKSNVVADALSR 554

BLAST of Pay0003424 vs. ExPASy TrEMBL
Match: A0A5D3CVF2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1623G00030 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 3.1e-58
Identity = 152/336 (45.24%), Postives = 156/336 (46.43%), Query Frame = 0

Query: 4   RRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVS--- 63
           RRWLELVKDYDCEILY+PGKANVVADALSRKVSHS ALITRQAPLHRD E AEIAVS   
Sbjct: 2   RRWLELVKDYDCEILYYPGKANVVADALSRKVSHSVALITRQAPLHRDFETAEIAVSRCL 61

Query: 64  --------------------GRLCVPSDCAVKTELLSEAHSSPFSMHPGSTKM------- 123
                                RLCVPSD AVKTELLSEAHSSPFSMHPGSTKM       
Sbjct: 62  AEAGQAVEFSKSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRA 121

Query: 124 ------------------------------------------------------------ 170
                                                                       
Sbjct: 122 YQISRLHSGENPLILLGLLAAMSTMLDFSTAFHPKTNGQTERLNQVLEDMLRACALEFPD 181

BLAST of Pay0003424 vs. ExPASy TrEMBL
Match: A0A5D3BKV5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00280 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 9.0e-58
Identity = 143/300 (47.67%), Postives = 155/300 (51.67%), Query Frame = 0

Query: 1   MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVS 60
           MRQRRWLELVKDY+CEILYHPGKANVV+DALSRKVSH AALITRQAPL+RD ERAEIAVS
Sbjct: 1   MRQRRWLELVKDYNCEILYHPGKANVVSDALSRKVSHLAALITRQAPLYRDFERAEIAVS 60

Query: 61  GRLCVPSDCAVKTELLSEAHSSPFSMHPG------------------------------- 120
            RLCVP+D A+KTELL+EAHSSPFSMH G                               
Sbjct: 61  RRLCVPADSALKTELLAEAHSSPFSMHLGLPRTLRGFTVIWVVVDRLTKSSHFIPGKSTY 120

Query: 121 ------------------------------------------------------------ 170
                                                                       
Sbjct: 121 TTSKWAQLYMSGIVRLHGVPVSIVSGRDARFTFKLLKGLRLLWARVFNLPLTWHHLRPCP 180

BLAST of Pay0003424 vs. ExPASy TrEMBL
Match: A0A5A7UE55 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35152G00010 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 6.5e-56
Identity = 138/242 (57.02%), Postives = 146/242 (60.33%), Query Frame = 0

Query: 1   MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVS 60
           MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEI VS
Sbjct: 1   MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIVVS 60

Query: 61  -GRLCVP-SDCAVKTEL------------------------------------------- 120
            G + +  +   V+  L                                           
Sbjct: 61  VGAVTIQLAQLTVQPTLRQRIIDAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRF 120

Query: 121 -----LSEAHSSPF-------------SMHPG----------STKMKYVPDPSHVVDYEP 170
                LS     PF             ++ P           S   KYVPDPSHVVDYEP
Sbjct: 121 ERRGKLSPRFVEPFEILERIGPVAYRLALPPSLSTVHDVFHVSILRKYVPDPSHVVDYEP 180

BLAST of Pay0003424 vs. ExPASy TrEMBL
Match: A0A5A7SZ74 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001000 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.8e-53
Identity = 154/389 (39.59%), Postives = 161/389 (41.39%), Query Frame = 0

Query: 1   MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVS 60
           MRQRRWLELVKDYDCEILY+PGKANVVADALSRKVSHSAALITRQAPLHRDLERA+IAVS
Sbjct: 291 MRQRRWLELVKDYDCEILYYPGKANVVADALSRKVSHSAALITRQAPLHRDLERAKIAVS 350

Query: 61  ---------------------------------------------------------GRL 120
                                                                     RL
Sbjct: 351 VGVVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRL 410

Query: 121 CVPSDCAVKTELLSEAHSSPFSMHPG---------------------------------- 170
           CVPSD  +KTELLSEAHSSPFSMHPG                                  
Sbjct: 411 CVPSDSVIKTELLSEAHSSPFSMHPGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 470

BLAST of Pay0003424 vs. ExPASy TrEMBL
Match: A0A5D3BRE5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00170 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 5.1e-53
Identity = 119/195 (61.03%), Postives = 137/195 (70.26%), Query Frame = 0

Query: 1   MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERA----- 60
           MRQRRWLELVKDYDCEILYHPGKANVVADA SRK      +  R  P   D  R      
Sbjct: 112 MRQRRWLELVKDYDCEILYHPGKANVVADAFSRK---KIIVAQRNDPYLVDKRRLVETGL 171

Query: 61  --EIAVSG--------RLCVPSDCAVKTELLSEAHSSPFSMHPGSTK-----------MK 120
             E ++S         RLC+ SD A+K +LL+EAHSSPF MHPG              + 
Sbjct: 172 VDEFSISSNDGLLFERRLCMLSDSAIKIDLLTEAHSSPFPMHPGLRNQHTSSQENPLVLL 231

Query: 121 YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWE 170
           YV DPSHVVDY+PLE+DENLSYVE+PVE+LA+EV+ LRNK IPLVKVLWRNH+VEEATWE
Sbjct: 232 YVIDPSHVVDYKPLEMDENLSYVERPVEILAKEVRMLRNKGIPLVKVLWRNHKVEEATWE 291

BLAST of Pay0003424 vs. NCBI nr
Match: TYK14914.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 6.4e-58
Identity = 152/336 (45.24%), Postives = 156/336 (46.43%), Query Frame = 0

Query: 4   RRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVS--- 63
           RRWLELVKDYDCEILY+PGKANVVADALSRKVSHS ALITRQAPLHRD E AEIAVS   
Sbjct: 2   RRWLELVKDYDCEILYYPGKANVVADALSRKVSHSVALITRQAPLHRDFETAEIAVSRCL 61

Query: 64  --------------------GRLCVPSDCAVKTELLSEAHSSPFSMHPGSTKM------- 123
                                RLCVPSD AVKTELLSEAHSSPFSMHPGSTKM       
Sbjct: 62  AEAGQAVEFSKSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRA 121

Query: 124 ------------------------------------------------------------ 170
                                                                       
Sbjct: 122 YQISRLHSGENPLILLGLLAAMSTMLDFSTAFHPKTNGQTERLNQVLEDMLRACALEFPD 181

BLAST of Pay0003424 vs. NCBI nr
Match: KAA0059773.1 (pol protein [Cucumis melo var. makuwa] >TYJ99786.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-57
Identity = 143/300 (47.67%), Postives = 155/300 (51.67%), Query Frame = 0

Query: 1   MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVS 60
           MRQRRWLELVKDY+CEILYHPGKANVV+DALSRKVSH AALITRQAPL+RD ERAEIAVS
Sbjct: 1   MRQRRWLELVKDYNCEILYHPGKANVVSDALSRKVSHLAALITRQAPLYRDFERAEIAVS 60

Query: 61  GRLCVPSDCAVKTELLSEAHSSPFSMHPG------------------------------- 120
            RLCVP+D A+KTELL+EAHSSPFSMH G                               
Sbjct: 61  RRLCVPADSALKTELLAEAHSSPFSMHLGLPRTLRGFTVIWVVVDRLTKSSHFIPGKSTY 120

Query: 121 ------------------------------------------------------------ 170
                                                                       
Sbjct: 121 TTSKWAQLYMSGIVRLHGVPVSIVSGRDARFTFKLLKGLRLLWARVFNLPLTWHHLRPCP 180

BLAST of Pay0003424 vs. NCBI nr
Match: KAA0052787.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-55
Identity = 138/242 (57.02%), Postives = 146/242 (60.33%), Query Frame = 0

Query: 1   MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVS 60
           MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEI VS
Sbjct: 1   MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIVVS 60

Query: 61  -GRLCVP-SDCAVKTEL------------------------------------------- 120
            G + +  +   V+  L                                           
Sbjct: 61  VGAVTIQLAQLTVQPTLRQRIIDAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRF 120

Query: 121 -----LSEAHSSPF-------------SMHPG----------STKMKYVPDPSHVVDYEP 170
                LS     PF             ++ P           S   KYVPDPSHVVDYEP
Sbjct: 121 ERRGKLSPRFVEPFEILERIGPVAYRLALPPSLSTVHDVFHVSILRKYVPDPSHVVDYEP 180

BLAST of Pay0003424 vs. NCBI nr
Match: KAA0036584.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.8 bits (556), Expect = 3.6e-53
Identity = 154/389 (39.59%), Postives = 161/389 (41.39%), Query Frame = 0

Query: 1   MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVS 60
           MRQRRWLELVKDYDCEILY+PGKANVVADALSRKVSHSAALITRQAPLHRDLERA+IAVS
Sbjct: 291 MRQRRWLELVKDYDCEILYYPGKANVVADALSRKVSHSAALITRQAPLHRDLERAKIAVS 350

Query: 61  ---------------------------------------------------------GRL 120
                                                                     RL
Sbjct: 351 VGVVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRL 410

Query: 121 CVPSDCAVKTELLSEAHSSPFSMHPG---------------------------------- 170
           CVPSD  +KTELLSEAHSSPFSMHPG                                  
Sbjct: 411 CVPSDSVIKTELLSEAHSSPFSMHPGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 470

BLAST of Pay0003424 vs. NCBI nr
Match: KAA0052064.1 (pol protein [Cucumis melo var. makuwa] >TYK00679.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-52
Identity = 119/195 (61.03%), Postives = 137/195 (70.26%), Query Frame = 0

Query: 1   MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERA----- 60
           MRQRRWLELVKDYDCEILYHPGKANVVADA SRK      +  R  P   D  R      
Sbjct: 112 MRQRRWLELVKDYDCEILYHPGKANVVADAFSRK---KIIVAQRNDPYLVDKRRLVETGL 171

Query: 61  --EIAVSG--------RLCVPSDCAVKTELLSEAHSSPFSMHPGSTK-----------MK 120
             E ++S         RLC+ SD A+K +LL+EAHSSPF MHPG              + 
Sbjct: 172 VDEFSISSNDGLLFERRLCMLSDSAIKIDLLTEAHSSPFPMHPGLRNQHTSSQENPLVLL 231

Query: 121 YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWE 170
           YV DPSHVVDY+PLE+DENLSYVE+PVE+LA+EV+ LRNK IPLVKVLWRNH+VEEATWE
Sbjct: 232 YVIDPSHVVDYKPLEMDENLSYVERPVEILAKEVRMLRNKGIPLVKVLWRNHKVEEATWE 291

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8I7P91.1e-0460.00Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
Match NameE-valueIdentityDescription
A0A5D3CVF23.1e-5845.24Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1623G00030 P... [more]
A0A5D3BKV59.0e-5847.67Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00280 PE... [more]
A0A5A7UE556.5e-5657.02Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35152G00010 ... [more]
A0A5A7SZ741.8e-5339.59Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BRE55.1e-5361.03Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00170 P... [more]
Match NameE-valueIdentityDescription
TYK14914.16.4e-5845.24pol protein [Cucumis melo var. makuwa][more]
KAA0059773.11.9e-5747.67pol protein [Cucumis melo var. makuwa] >TYJ99786.1 pol protein [Cucumis melo var... [more]
KAA0052787.11.3e-5557.02pol protein [Cucumis melo var. makuwa][more]
KAA0036584.13.6e-5339.59ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0052064.11.1e-5261.03pol protein [Cucumis melo var. makuwa] >TYK00679.1 pol protein [Cucumis melo var... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46148:SF33OS05G0296332 PROTEINcoord: 90..167
NoneNo IPR availablePANTHERPTHR46148FAMILY NOT NAMEDcoord: 90..167
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 97..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0003424.1Pay0003424.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity