Pay0003401 (gene) Melon (Payzawat) v1

Overview


Name	Pay0003401
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr07: 10610564 .. 10612555 (+)
RNA-Seq Expression	Pay0003401
Synteny	Pay0003401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAACAATGACAATGCTATGGGTACAGCACAACCACTAATTCCAATCTTCAAAGGAGAAGTCTACGAGTTTTGAAGTATTCGTATGAAGACTCTTCTCAAATCTCAAGACTTATGGGACTTAGTAGAACAAGGCTATGCAGATCCTGACGACGAAGGCAAGTTGCGGGAGAACATGAAGAAAGACTCGAAGGCATTGGTGATTACTCAACAAGCAGTCCATGATAGTGTTTTTTCGCGGATTGCTGCAGCAACAACGTCAAAACAAGTGTATTTTGCAAAAGGCATTTCAAGGAGATTCAAGAGTACTTGTGGTTAAATTGCAATCACTTAGACGAGACTTCGAGACCTTGATGATGAAAAATGGAGAATCAATTGTTGATTTTTTGTCACGGGCAACAACAATTATTAGTTAGATGCAAACATACGGCGAGGCGATTAAGGATCAGACTATAGTGGAGAAAGTATTGAGAAGTTTGACTCCAAAGTTTGATCATGTTGTAGTTGCAATAGAAGAATCAAAGAATCTGTCCACTTTCACATTTATTGAATTAATGGGATCTCTTGAAGCACATGAGTCGAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATATAGTTCCAAAGTATAATGACAATGATCGTGTGATGACTCGAGGCCGAGGAAGAGGAAGATATCGTGGTCGAGGTCGTGGTACCGGAAAAGGATGTAACCGAAATGAAGAACAAGGCAGTTCGGAGTGCAATCAAGCAACAATGCTAATATTCAATGCTACCATTGCAAGAAGTTTGGTCATGTAAAGGCAGACTGTTGGTCCAAAAATCAAAGAGCCAATTTCGCAGCAGAGAATGAAGCATCTGAGAATAATGGAAAGGGTGAAAATAAGCATTTTATGACAAACATACCCAGTGATCAAAAGACAGCAGAGGTGTGGTTCATTGATAACGATTGTTCGAATCATATGACAGGTTTGAAGCCTGTATTCAAGGAGCTTAACGAAGGAGAAAAGTTGAAGGTAGAGCTCGGAAACAGTAAGGAGCTACAAGTAGAAGGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATGGAGAGTGGGTATTCTATCTTGTTTGATGATGGTGCGTGCTTGATAAAAAATAAGCAAACAGAACGAGTTTTGGTGAAAGTAAAGATGACCCAAAGCAAAATGTTTCCGCTGGAAGTTTCAAATGTGGAAAATTTTGCTCTTACTGCTACTGCAACAAATACAACAAAGAACAACTCGAAGTTATGGTATTTAAGGTATGGACATCTTAATATTAAAGGGCTTTCTTTGCTAAATCAAAGAGATATGGTTATTGGGTTACCGAAAATCACTGCTATTAATATTTGTGAAGGATGTGTGTATGGAAAACAAACTCGAAAATCTTTTCCTATTGGGAAAGCTTGGAGAGCCTCGAAATGTCTCGAGCTAATTCATGCTGATCTGTGAGGGCCAATGCAAACAAAGTCTCTTGGTGGGAGCTTTTATTTCTTGATTTTTATAGATGATAATAGCCGTATGAGTAGGATATATTTTCTAGAAAGCAAATAAAAAACATTTGAGAAGTTCAAGCATTTCAAGACAAAGGTAGAAAAGCAGAGTGACATGTCCATCAAATCTCTTCGCAGTGATAGAAGTGGAGAATTTTTGTCCAACAACTTTAACCATTTTTGCAAGGAACATGGCATCCATAGGAAGTTGACAATACCTTATACTCCGAAGCAAAATGGGGTAGCTGAGAGGAAGAATCGAACCGTGGTGGAGATGGCAAGAATCATGTTGCAAATGAAAGGCCTTTCGAATGATTTTTGGGCTGAAGCAGTCTCGACTTCCAGACCTACTGAACATCTCACCAACAAAGACTGTCATGAATAA

mRNA sequence

ATGAGCAACAATGACAATGCTATGGGTACAGCACAACCACTAATTCCAATCTTCAAAGGAGAAACTCTTCTCAAATCTCAAGACTTATGGGACTTAGTAGAACAAGGCTATGCAGATCCTGACGACGAAGGCAAGTTGCGGGAGAACATGAAGAAAGACTCGAAGGCATTGGTGATTACTCAACAAGCAGTCCATGATAGTTGTATTTTGCAAAAGGCATTTCAAGGAGATTCAAGAGTACTTGTGGTTAAATTGCAATCACTTAGACGAGACTTCGAGACCTTGATGATGAAAAATGGAGAATCAATTATGCAAACATACGGCGAGGCGATTAAGGATCAGACTATAGTGGAGAAAGTATTGAGAAGTTTGACTCCAAAGTTTGATCATGTTGTAGTTGCAATAGAAGAATCAAAGAATCTGTCCACTTTCACATTTATTGAATTAATGGGATCTCTTGAAGCACATGAGTCGAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATATAGTTCCAAAGTATAATGACAATGATCGTGTGATGACTCGAGGCCGAGGAAGAGGAAGATATCGTGGTCGAGGTCGTGGTACCGGAAAAGGATTGCAATCAAGCAACAATGCTAATATTCAATGCTACCATTGCAAGAAGTTTGGTCATGTAAAGGCAGACTGTTTGAAGCCTGTATTCAAGGAGCTTAACGAAGGAGAAAAGTTGAAGGTAGAGCTCGGAAACAGTAAGGAGCTACAAGTAGAAGGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATGGAGAGTGGGTATTCTATCTTGTTTGATGATGGTGCGTGCTTGATAAAAAATAAGCAAACAGAACGAAAGTTCAAGCATTTCAAGACAAAGGTAGAAAAGCAGAGTGACATGTCCATCAAATCTCTTCGCAGTGATAGAAGTGGAGAATTTTTGTCCAACAACTTTAACCATTTTTGCAAGGAACATGGCATCCATAGGAAGTTGACAATACCTTATACTCCGAAGCAAAATGGGGTAGCTGAGAGGAAGAATCGAACCGTGGTGGAGATGGCAAGAATCATGTTGCAAATGAAAGGCCTTTCGAATGATTTTTGGGCTGAAGCAGTCTCGACTTCCAGACCTACTGAACATCTCACCAACAAAGACTGTCATGAATAA

Coding sequence (CDS)

ATGAGCAACAATGACAATGCTATGGGTACAGCACAACCACTAATTCCAATCTTCAAAGGAGAAACTCTTCTCAAATCTCAAGACTTATGGGACTTAGTAGAACAAGGCTATGCAGATCCTGACGACGAAGGCAAGTTGCGGGAGAACATGAAGAAAGACTCGAAGGCATTGGTGATTACTCAACAAGCAGTCCATGATAGTTGTATTTTGCAAAAGGCATTTCAAGGAGATTCAAGAGTACTTGTGGTTAAATTGCAATCACTTAGACGAGACTTCGAGACCTTGATGATGAAAAATGGAGAATCAATTATGCAAACATACGGCGAGGCGATTAAGGATCAGACTATAGTGGAGAAAGTATTGAGAAGTTTGACTCCAAAGTTTGATCATGTTGTAGTTGCAATAGAAGAATCAAAGAATCTGTCCACTTTCACATTTATTGAATTAATGGGATCTCTTGAAGCACATGAGTCGAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATATAGTTCCAAAGTATAATGACAATGATCGTGTGATGACTCGAGGCCGAGGAAGAGGAAGATATCGTGGTCGAGGTCGTGGTACCGGAAAAGGATTGCAATCAAGCAACAATGCTAATATTCAATGCTACCATTGCAAGAAGTTTGGTCATGTAAAGGCAGACTGTTTGAAGCCTGTATTCAAGGAGCTTAACGAAGGAGAAAAGTTGAAGGTAGAGCTCGGAAACAGTAAGGAGCTACAAGTAGAAGGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATGGAGAGTGGGTATTCTATCTTGTTTGATGATGGTGCGTGCTTGATAAAAAATAAGCAAACAGAACGAAAGTTCAAGCATTTCAAGACAAAGGTAGAAAAGCAGAGTGACATGTCCATCAAATCTCTTCGCAGTGATAGAAGTGGAGAATTTTTGTCCAACAACTTTAACCATTTTTGCAAGGAACATGGCATCCATAGGAAGTTGACAATACCTTATACTCCGAAGCAAAATGGGGTAGCTGAGAGGAAGAATCGAACCGTGGTGGAGATGGCAAGAATCATGTTGCAAATGAAAGGCCTTTCGAATGATTTTTGGGCTGAAGCAGTCTCGACTTCCAGACCTACTGAACATCTCACCAACAAAGACTGTCATGAATAA

Protein sequence

MSNNDNAMGTAQPLIPIFKGETLLKSQDLWDLVEQGYADPDDEGKLRENMKKDSKALVITQQAVHDSCILQKAFQGDSRVLVVKLQSLRRDFETLMMKNGESIMQTYGEAIKDQTIVEKVLRSLTPKFDHVVVAIEESKNLSTFTFIELMGSLEAHESRINRSMERNEEKAFQVKDIVPKYNDNDRVMTRGRGRGRYRGRGRGTGKGLQSSNNANIQCYHCKKFGHVKADCLKPVFKELNEGEKLKVELGNSKELQVEGKGTVGIETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERKFKHFKTKVEKQSDMSIKSLRSDRSGEFLSNNFNHFCKEHGIHRKLTIPYTPKQNGVAERKNRTVVEMARIMLQMKGLSNDFWAEAVSTSRPTEHLTNKDCHE

Homology

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BLAST of Pay0003401 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.4e-18
Identity = 50/116 (43.10%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 298 YSILFDDGAC------LIKNK-QTERKFKHFKTKVEKQSDMSIKSLRSDRSGEFLSNNFN 357
           Y + F D A       ++K K Q  + F+ F   VE+++   +K LRSD  GE+ S  F 
Sbjct: 502 YFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFE 561

Query: 358 HFCKEHGIHRKLTIPYTPKQNGVAERKNRTVVEMARIMLQMKGLSNDFWAEAVSTS 407
            +C  HGI  + T+P TP+ NGVAER NRT+VE  R ML+M  L   FW EAV T+
Sbjct: 562 EYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTA 617

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BLAST of Pay0003401 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.6e-07
Identity = 33/99 (33.33%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 308 LIKNKQTERKFKHFKTKVEKQSDMSIKSLRSDRSGEFLSNNFNHFCKEHGIHRKLTIPYT 367
           L +  Q +  F  FK+ VE +    I +L SD  GEF+      +  +HGI    + P+T
Sbjct: 540 LKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVV--LRDYLSQHGISHFTSPPHT 599

Query: 368 PKQNGVAERKNRTVVEMARIMLQMKGLSNDFWAEAVSTS 407
           P+ NG++ERK+R +VEM   +L    +   +W  A S +
Sbjct: 600 PEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVA 636

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BLAST of Pay0003401 vs. ExPASy Swiss-Prot
Match: Q07163 (Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae OX=4932 GN=TY1B PE=1 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 3.3e-05
Identity = 26/82 (31.71%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 325 VEKQSDMSIKSLRSDRSGEFLSNNFNHFCKEHGIHRKLTIPYTPKQNGVAERKNRTVVEM 384
           ++ Q   S+  ++ DR  E+ +   + F +++GI    T     + +GVAER NRT+++ 
Sbjct: 722 IKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDD 781

Query: 385 ARIMLQMKGLSNDFWAEAVSTS 407
            R  LQ  GL N  W  A+  S
Sbjct: 782 CRTQLQCSGLPNHLWFSAIEFS 803

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BLAST of Pay0003401 vs. ExPASy Swiss-Prot
Match: O13527 (Truncated transposon Ty1-A Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-A PE=3 SV=3)

HSP 1 Score: 51.2 bits (121), Expect = 3.3e-05
Identity = 26/82 (31.71%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 325 VEKQSDMSIKSLRSDRSGEFLSNNFNHFCKEHGIHRKLTIPYTPKQNGVAERKNRTVVEM 384
           ++ Q   S+  ++ DR  E+ +   + F +++GI    T     + +GVAER NRT+++ 
Sbjct: 163 IKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDD 222

Query: 385 ARIMLQMKGLSNDFWAEAVSTS 407
            R  LQ  GL N  W  A+  S
Sbjct: 223 CRTQLQCSGLPNHLWFSAIEFS 244

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BLAST of Pay0003401 vs. ExPASy Swiss-Prot
Match: Q12490 (Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-BL PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 3.3e-05
Identity = 26/82 (31.71%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 325 VEKQSDMSIKSLRSDRSGEFLSNNFNHFCKEHGIHRKLTIPYTPKQNGVAERKNRTVVEM 384
           ++ Q   S+  ++ DR  E+ +   + F +++GI    T     + +GVAER NRT+++ 
Sbjct: 722 IKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDD 781

Query: 385 ARIMLQMKGLSNDFWAEAVSTS 407
            R  LQ  GL N  W  A+  S
Sbjct: 782 CRTQLQCSGLPNHLWFSAIEFS 803

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BLAST of Pay0003401 vs. ExPASy TrEMBL
Match: A0A5D3DWP2 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00850 PE=4 SV=1)

HSP 1 Score: 582.0 bits (1499), Expect = 2.0e-162
Identity = 356/637 (55.89%), Postives = 367/637 (57.61%), Query Frame = 0


Query: 21  ETLLKSQDLWDLVEQGYADPDDEGKLRENMKKDSKALVITQQAVHDS------------- 80
           +TLL+SQDLWDLVEQGY DPDDEGKLREN KKDSKALVI QQAVHDS             
Sbjct: 118 KTLLRSQDLWDLVEQGYVDPDDEGKLRENRKKDSKALVIIQQAVHDSVFSRIATATTSKQ 177

Query: 81  --CILQKAFQGDSRVLVVKLQSLRRDFETLMMKNGESI-------------MQTYGEAIK 140
              ILQKAFQGDSRVL+VKLQSLRRDFETLMMKNGESI             MQTYGE IK
Sbjct: 178 AWLILQKAFQGDSRVLMVKLQSLRRDFETLMMKNGESIADFLSRATTIISQMQTYGETIK 237

Query: 141 DQTIVEKVLRSLTPKFDHVVVAIEESKNLSTFTFIELMGSLEAHESRINRSMERNEEKAF 200
           DQTIVEKVLRSLTPKFDHVV AIEESKNL TFTFIELMGSLEAHESRINRSMERNEEKAF
Sbjct: 238 DQTIVEKVLRSLTPKFDHVVAAIEESKNLFTFTFIELMGSLEAHESRINRSMERNEEKAF 297

Query: 201 QVKDIVPKYNDNDRVMTRGRGRGRYRGRGRGTGK-----------GLQSSNNANIQCYHC 260
           QVKD VPKYND+DRVMTRGRGRG YRGRG GT K           G+QSSN ANIQCYHC
Sbjct: 298 QVKDAVPKYNDSDRVMTRGRGRGGYRGRGHGTEKGCNRNEAQRQFGVQSSNKANIQCYHC 357

Query: 261 KKFGHVKADC-------------------------------------------------- 320
           KKFGHVKADC                                                  
Sbjct: 358 KKFGHVKADCWYKNQRANFAAENEASENNGNCENKLFMTNIPSDQKTAEVWFIDSSCSNH 417

Query: 321 ---LKPVFKELNEGEKLKVELGNSKELQVEGKGTVGIETHHGNRILTNVQYVPDIGYNLL 380
              LKPVFKELNEGEKLKV+L N KELQVEGKGTV IETHHGNRILTNVQYVPDIGYNLL
Sbjct: 418 MTGLKPVFKELNEGEKLKVKLRNGKELQVEGKGTVVIETHHGNRILTNVQYVPDIGYNLL 477

Query: 381 SVGQLMESGYSILFDDGACLIKNKQTER-------------------------------- 416
           SVGQLMESGYSILFDDGACLIKNKQT R                                
Sbjct: 478 SVGQLMESGYSILFDDGACLIKNKQTGRVLAKVKMTQSKMFPLEVSNVESFALTATATNT 537

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BLAST of Pay0003401 vs. ExPASy TrEMBL
Match: A0A5D3DWC7 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00230 PE=4 SV=1)

HSP 1 Score: 581.6 bits (1498), Expect = 2.6e-162
Identity = 344/588 (58.50%), Postives = 367/588 (62.41%), Query Frame = 0


Query: 1   MSNNDNAMGTAQPLIPIFKGE----------TLLKSQDLWDLVEQGYADPDDEGKLRENM 60
           MSNN N MGTAQPLIPIFKGE          TLL SQDLWDLVEQGY DPDDEGKL+EN 
Sbjct: 1   MSNNGNVMGTAQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60

Query: 61  KKDSKALVITQQAVHDSCILQKAFQGDSRVLVVKLQSLRRDFETLMMKNGESI------- 120
           +KDSKALVI QQAVHD+          SR+      +  RDFETLMMKNGESI       
Sbjct: 61  EKDSKALVIIQQAVHDNVF--------SRIAA----ATTRDFETLMMKNGESIADFLSRA 120

Query: 121 ------MQTYGEAIKDQTIVEKVLRSLTPKFDHVVVAIEESKNLSTFTFIELMGSLEAHE 180
                 MQTYGE I DQTIVEKVLRSLTPKFDHVVVAIEESK+LSTFTFIELMGSL+AHE
Sbjct: 121 TTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVVAIEESKDLSTFTFIELMGSLQAHE 180

Query: 181 SRINRSMERNEEKAFQVKDIVPKYNDNDRVMTRGRGRGRYRGRGRGTGK----------- 240
           SRIN SME+NEEKAF+VKD+VPKYND+D VMT+G+G G YR RGRGTGK           
Sbjct: 181 SRINISMEKNEEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGRGTGKGCNQNEEQRQF 240

Query: 241 GLQSSNNANIQCYHCKKFGHVKADC----------------------------------- 300
           G+QSSN ANIQCYHCKKFGHVKADC                                   
Sbjct: 241 GVQSSNKANIQCYHCKKFGHVKADCWYKNHRANFTEQNEASENNGNGENKLFMTNIPSDQ 300

Query: 301 ------------------LKPVFKELNEGEKLKVELGNSKELQVEGKGTVGIETHHGNRI 360
                             LKPVFKELNEGEKLKVELGN KELQVEGK T+GIETH+GNRI
Sbjct: 301 KTTEVWFIDSGHLNHMTDLKPVFKELNEGEKLKVELGNGKELQVEGKRTMGIETHNGNRI 360

Query: 361 LTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTER----------------- 416
           LTNVQYVPDIGYNLLSVGQLMESG+SILFDDGACLIKNKQT R                 
Sbjct: 361 LTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQTGRVLAKVKMTQSKMFPLEV 420

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BLAST of Pay0003401 vs. ExPASy TrEMBL
Match: A0A5A7UQM0 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00340 PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 7.2e-157
Identity = 327/530 (61.70%), Postives = 356/530 (67.17%), Query Frame = 0


Query: 1   MSNNDNAMGTAQPLIPIFKGE----------TLLKSQDLWDLVEQGYADPDDEGKLRENM 60
           MSNN N MGT QPLIPIFKGE          TLL SQDLWDLVEQGY DPDDEGKL+EN 
Sbjct: 1   MSNNGNVMGTTQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60

Query: 61  KKDSKALVITQQAVHDS---------------CILQKAFQGDSRVLVVKLQSLRRDFETL 120
           +KD KALVI QQAVHD+                ILQKAFQGDSRVLVVKLQSL+RDFETL
Sbjct: 61  EKDPKALVIVQQAVHDNVFSRIAAATTSKQAWLILQKAFQGDSRVLVVKLQSLKRDFETL 120

Query: 121 MMKNGESI-------------MQTYGEAIKDQTIVEKVLRSLTPKFDHVVVAIEESKNLS 180
           MMKNGESI             MQTYGE I DQTIVEKVLRSLTPKFDHVV AIEESK+LS
Sbjct: 121 MMKNGESIADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVAAIEESKDLS 180

Query: 181 TFTFIELMGSLEAHESRINRSMERNEEKAFQVKDIVPKYNDNDRVMTRGRGRGRYRGRGR 240
           TFTFIELMGSL+AHESRIN SME+N+EKAF+VKD+VPKYND+D VMT+G+G G YR RGR
Sbjct: 181 TFTFIELMGSLQAHESRINISMEKNKEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGR 240

Query: 241 GTGK-----------GLQSSNNANIQCYHCKKFGHVKADC-------------------- 300
           GTGK           G+QSSN ANIQCYHCKKFGHVKADC                    
Sbjct: 241 GTGKGCNQNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNQRANFTEQNEASENNG 300

Query: 301 ---------------------------------LKPVFKELNEGEKLKVELGNSKELQVE 360
                                            LKPVFKELNEGEKLKVELGNSKELQVE
Sbjct: 301 KGENKLFMINIPSDQKTTEVWFIDSGHLNHMTGLKPVFKELNEGEKLKVELGNSKELQVE 360

Query: 361 GKGTVGIETHHGNRILTNVQYV-------PDIGYNLLSVGQLMESGYSILFDDGACLIKN 416
           GK  +GIETH+GNRILTNVQ         P    N+ +      +  +   +     +  
Sbjct: 361 GKRMMGIETHNGNRILTNVQTSFGESKDDPKEVSNVENFALTATATNTTKNNSELWHLSQ 420

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BLAST of Pay0003401 vs. ExPASy TrEMBL
Match: A0A5D3CL10 (UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00080 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 3.1e-123
Identity = 261/394 (66.24%), Postives = 280/394 (71.07%), Query Frame = 0


Query: 31  DLVEQGYADPDDEGKLRENMKKDSKALVITQQAVHDS---------------CILQKAFQ 90
           +LVEQGYADPDDEGKLR N KKDSK LVI QQAVHDS                ILQK FQ
Sbjct: 2   NLVEQGYADPDDEGKLRMNKKKDSKVLVIIQQAVHDSVFSQIVIATTSKQAWLILQKEFQ 61

Query: 91  GDSRVLVVKLQSLRRDFETLMMKNGESI-------------MQTYGEAIKDQTIVEKVLR 150
           GDSRVLVVKLQSLRRDFETLMMKNGESI             MQTY E IKD TIVEKVLR
Sbjct: 62  GDSRVLVVKLQSLRRDFETLMMKNGESIADFLSRATTIISQMQTYSETIKDHTIVEKVLR 121

Query: 151 SLTPKFDHVVVAIEESKNLSTFTFIELMGSLEAHESRINRSMERNEEKAFQVKDIVPKYN 210
           SLTPKFDHVV  IEESK+LSTFTFIELMGSL+AHESRINRSMERNEEKAFQVKD+V KYN
Sbjct: 122 SLTPKFDHVVATIEESKDLSTFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVLKYN 181

Query: 211 DNDRVMTRGRGRGRYRGRGRGTGK-----------GLQSSNNANIQCYHCKKFGHVKADC 270
           D+DRV TRGRGRG YRGRG G  K           G+QSSN ANIQCYH KKFGHVKADC
Sbjct: 182 DSDRVTTRGRGRGGYRGRGCGIEKGCNQNEEQRQFGVQSSNKANIQCYHFKKFGHVKADC 241

Query: 271 ----LKPVFKELNEGEKL--KVELGNSKELQVEGKGTVGIETHHGNRILTNVQYVPDIGY 330
                +   ++  E +++  +VELGN KELQVEGKGTVGIETHHGNRILT          
Sbjct: 242 WYKNQRANSQQRMEHQRIMERVELGNGKELQVEGKGTVGIETHHGNRILT---------- 301

Query: 331 NLLSVGQLMESGYSILFDDGACLIKNK-QTERKFKHFKTKVEKQSDMSIKSLRSDRSGEF 379
                                 + K+K +T  KFKHFK KVEKQS M IKSLRSDR GEF
Sbjct: 302 ----------------------MFKSKSETFEKFKHFKAKVEKQSGMFIKSLRSDRGGEF 361

[Close]

BLAST of Pay0003401 vs. ExPASy TrEMBL
Match: A0A5A7TZP7 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00180 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 5.4e-120
Identity = 263/391 (67.26%), Postives = 274/391 (70.08%), Query Frame = 0


Query: 1   MSNNDNAMGTAQPLIPIFKGE----------TLLKSQDLWDLVEQGYADPDDEGKLRENM 60
           M +N N MGT QPLIPIFKGE          TLL+SQDLWDLVEQGY DPDD+GKLREN 
Sbjct: 1   MGSNGNGMGTTQPLIPIFKGEGYEFWSIPMKTLLRSQDLWDLVEQGYVDPDDKGKLRENK 60

Query: 61  KKDSKALVITQQAVHDSCILQKAFQGDSRVLVVKLQSLRRDFETLMMKNGESI------- 120
           KKDSKALVI QQAVHDS          SR++     +  RDFETLMMKNGESI       
Sbjct: 61  KKDSKALVIIQQAVHDSVF--------SRIVA----ATTRDFETLMMKNGESIADFLSRA 120

Query: 121 ------MQTYGEAIKDQTIVEKVLRSLTPKFDHVVVAIEESKNLSTFTFIELMGSLEAHE 180
                 MQTYGE IKDQTIVEKVL SLTPKFDHVVVAIEESKNLSTFTFIELMGSLEAHE
Sbjct: 121 TIIISQMQTYGETIKDQTIVEKVLISLTPKFDHVVVAIEESKNLSTFTFIELMGSLEAHE 180

Query: 181 SRINRSMERNEEKAFQVKDIVPKYNDNDRVMTRGRGRGRYRGRGRGTGKGLQSSNNANIQ 240
           SRINRSMERNEEKAFQ       +  N RV                 GKG       NI 
Sbjct: 181 SRINRSMERNEEKAFQ----ADYWYKNQRVNFAAENEA-----SENNGKGENKLFMTNI- 240

Query: 241 CYHCKKFGHV---KADC------LKPVFKELNEGEKLKVELGNSKELQVEGKGTVGIETH 300
               +K G V    + C      LKPVFKELNEGEKLKVEL N KELQVEGKGTVGIETH
Sbjct: 241 -LSDQKTGEVWFIDSGCSNHMTGLKPVFKELNEGEKLKVELENGKELQVEGKGTVGIETH 300

Query: 301 HGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERKFKHFKTKVEKQ 360
           HGNRILTNVQYVPDIGYNLLSVGQLMESG SILFDD +      +T  KFKHFK KVEKQ
Sbjct: 301 HGNRILTNVQYVPDIGYNLLSVGQLMESGLSILFDDES----KSETFEKFKHFKAKVEKQ 360

[Close]

BLAST of Pay0003401 vs. NCBI nr
Match: TYK27735.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 582.0 bits (1499), Expect = 4.1e-162
Identity = 356/637 (55.89%), Postives = 367/637 (57.61%), Query Frame = 0


Query: 21  ETLLKSQDLWDLVEQGYADPDDEGKLRENMKKDSKALVITQQAVHDS------------- 80
           +TLL+SQDLWDLVEQGY DPDDEGKLREN KKDSKALVI QQAVHDS             
Sbjct: 118 KTLLRSQDLWDLVEQGYVDPDDEGKLRENRKKDSKALVIIQQAVHDSVFSRIATATTSKQ 177

Query: 81  --CILQKAFQGDSRVLVVKLQSLRRDFETLMMKNGESI-------------MQTYGEAIK 140
              ILQKAFQGDSRVL+VKLQSLRRDFETLMMKNGESI             MQTYGE IK
Sbjct: 178 AWLILQKAFQGDSRVLMVKLQSLRRDFETLMMKNGESIADFLSRATTIISQMQTYGETIK 237

Query: 141 DQTIVEKVLRSLTPKFDHVVVAIEESKNLSTFTFIELMGSLEAHESRINRSMERNEEKAF 200
           DQTIVEKVLRSLTPKFDHVV AIEESKNL TFTFIELMGSLEAHESRINRSMERNEEKAF
Sbjct: 238 DQTIVEKVLRSLTPKFDHVVAAIEESKNLFTFTFIELMGSLEAHESRINRSMERNEEKAF 297

Query: 201 QVKDIVPKYNDNDRVMTRGRGRGRYRGRGRGTGK-----------GLQSSNNANIQCYHC 260
           QVKD VPKYND+DRVMTRGRGRG YRGRG GT K           G+QSSN ANIQCYHC
Sbjct: 298 QVKDAVPKYNDSDRVMTRGRGRGGYRGRGHGTEKGCNRNEAQRQFGVQSSNKANIQCYHC 357

Query: 261 KKFGHVKADC-------------------------------------------------- 320
           KKFGHVKADC                                                  
Sbjct: 358 KKFGHVKADCWYKNQRANFAAENEASENNGNCENKLFMTNIPSDQKTAEVWFIDSSCSNH 417

Query: 321 ---LKPVFKELNEGEKLKVELGNSKELQVEGKGTVGIETHHGNRILTNVQYVPDIGYNLL 380
              LKPVFKELNEGEKLKV+L N KELQVEGKGTV IETHHGNRILTNVQYVPDIGYNLL
Sbjct: 418 MTGLKPVFKELNEGEKLKVKLRNGKELQVEGKGTVVIETHHGNRILTNVQYVPDIGYNLL 477

Query: 381 SVGQLMESGYSILFDDGACLIKNKQTER-------------------------------- 416
           SVGQLMESGYSILFDDGACLIKNKQT R                                
Sbjct: 478 SVGQLMESGYSILFDDGACLIKNKQTGRVLAKVKMTQSKMFPLEVSNVESFALTATATNT 537

[Close]

BLAST of Pay0003401 vs. NCBI nr
Match: TYK28117.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 581.6 bits (1498), Expect = 5.3e-162
Identity = 344/588 (58.50%), Postives = 367/588 (62.41%), Query Frame = 0


Query: 1   MSNNDNAMGTAQPLIPIFKGE----------TLLKSQDLWDLVEQGYADPDDEGKLRENM 60
           MSNN N MGTAQPLIPIFKGE          TLL SQDLWDLVEQGY DPDDEGKL+EN 
Sbjct: 1   MSNNGNVMGTAQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60

Query: 61  KKDSKALVITQQAVHDSCILQKAFQGDSRVLVVKLQSLRRDFETLMMKNGESI------- 120
           +KDSKALVI QQAVHD+          SR+      +  RDFETLMMKNGESI       
Sbjct: 61  EKDSKALVIIQQAVHDNVF--------SRIAA----ATTRDFETLMMKNGESIADFLSRA 120

Query: 121 ------MQTYGEAIKDQTIVEKVLRSLTPKFDHVVVAIEESKNLSTFTFIELMGSLEAHE 180
                 MQTYGE I DQTIVEKVLRSLTPKFDHVVVAIEESK+LSTFTFIELMGSL+AHE
Sbjct: 121 TTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVVAIEESKDLSTFTFIELMGSLQAHE 180

Query: 181 SRINRSMERNEEKAFQVKDIVPKYNDNDRVMTRGRGRGRYRGRGRGTGK----------- 240
           SRIN SME+NEEKAF+VKD+VPKYND+D VMT+G+G G YR RGRGTGK           
Sbjct: 181 SRINISMEKNEEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGRGTGKGCNQNEEQRQF 240

Query: 241 GLQSSNNANIQCYHCKKFGHVKADC----------------------------------- 300
           G+QSSN ANIQCYHCKKFGHVKADC                                   
Sbjct: 241 GVQSSNKANIQCYHCKKFGHVKADCWYKNHRANFTEQNEASENNGNGENKLFMTNIPSDQ 300

Query: 301 ------------------LKPVFKELNEGEKLKVELGNSKELQVEGKGTVGIETHHGNRI 360
                             LKPVFKELNEGEKLKVELGN KELQVEGK T+GIETH+GNRI
Sbjct: 301 KTTEVWFIDSGHLNHMTDLKPVFKELNEGEKLKVELGNGKELQVEGKRTMGIETHNGNRI 360

Query: 361 LTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTER----------------- 416
           LTNVQYVPDIGYNLLSVGQLMESG+SILFDDGACLIKNKQT R                 
Sbjct: 361 LTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQTGRVLAKVKMTQSKMFPLEV 420

[Close]

BLAST of Pay0003401 vs. NCBI nr
Match: KAA0055915.1 (copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 563.5 bits (1451), Expect = 1.5e-156
Identity = 327/530 (61.70%), Postives = 356/530 (67.17%), Query Frame = 0


Query: 1   MSNNDNAMGTAQPLIPIFKGE----------TLLKSQDLWDLVEQGYADPDDEGKLRENM 60
           MSNN N MGT QPLIPIFKGE          TLL SQDLWDLVEQGY DPDDEGKL+EN 
Sbjct: 1   MSNNGNVMGTTQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60

Query: 61  KKDSKALVITQQAVHDS---------------CILQKAFQGDSRVLVVKLQSLRRDFETL 120
           +KD KALVI QQAVHD+                ILQKAFQGDSRVLVVKLQSL+RDFETL
Sbjct: 61  EKDPKALVIVQQAVHDNVFSRIAAATTSKQAWLILQKAFQGDSRVLVVKLQSLKRDFETL 120

Query: 121 MMKNGESI-------------MQTYGEAIKDQTIVEKVLRSLTPKFDHVVVAIEESKNLS 180
           MMKNGESI             MQTYGE I DQTIVEKVLRSLTPKFDHVV AIEESK+LS
Sbjct: 121 MMKNGESIADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVAAIEESKDLS 180

Query: 181 TFTFIELMGSLEAHESRINRSMERNEEKAFQVKDIVPKYNDNDRVMTRGRGRGRYRGRGR 240
           TFTFIELMGSL+AHESRIN SME+N+EKAF+VKD+VPKYND+D VMT+G+G G YR RGR
Sbjct: 181 TFTFIELMGSLQAHESRINISMEKNKEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGR 240

Query: 241 GTGK-----------GLQSSNNANIQCYHCKKFGHVKADC-------------------- 300
           GTGK           G+QSSN ANIQCYHCKKFGHVKADC                    
Sbjct: 241 GTGKGCNQNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNQRANFTEQNEASENNG 300

Query: 301 ---------------------------------LKPVFKELNEGEKLKVELGNSKELQVE 360
                                            LKPVFKELNEGEKLKVELGNSKELQVE
Sbjct: 301 KGENKLFMINIPSDQKTTEVWFIDSGHLNHMTGLKPVFKELNEGEKLKVELGNSKELQVE 360

Query: 361 GKGTVGIETHHGNRILTNVQYV-------PDIGYNLLSVGQLMESGYSILFDDGACLIKN 416
           GK  +GIETH+GNRILTNVQ         P    N+ +      +  +   +     +  
Sbjct: 361 GKRMMGIETHNGNRILTNVQTSFGESKDDPKEVSNVENFALTATATNTTKNNSELWHLSQ 420

[Close]

BLAST of Pay0003401 vs. NCBI nr
Match: KAE8650579.1 (hypothetical protein Csa_010963 [Cucumis sativus])

HSP 1 Score: 495.0 bits (1273), Expect = 6.5e-136
Identity = 276/384 (71.88%), Postives = 291/384 (75.78%), Query Frame = 0


Query: 1   MSNNDNAMGTAQPLIPIFKGE----------TLLKSQDLWDLVEQGYADPDDEGKLRENM 60
           M NN NAMGT QPLI IFKGE          TLL+SQDLWDLVE  YADPDDEGKLRE  
Sbjct: 1   MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR 60

Query: 61  KKDSKALVITQQAVHDS---------------CILQKAFQGDSRVLVVKLQSLRRDFETL 120
           +KDSKALVI QQAVHDS                ILQKAF+GD RVLVVKLQSLR++FETL
Sbjct: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL 120

Query: 121 MMKNGESI-------------MQTYGEAIKDQTIVEKVLRSLTPKFDHVVVAIEESKNLS 180
           MMKN ESI             MQTYGE I DQTIVEKVLRSLT KFD VV AIEESK+LS
Sbjct: 121 MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS 180

Query: 181 TFTFIELMGSLEAHESRINRSMERNEEKAFQVKDIVPKYNDNDRVMTRGRGRGRYRGRGR 240
           TFTFIELMGSL+AHESRINRSMERNEEKAFQVKD+VPKYN++DRVMTRGRGRG YRG+GR
Sbjct: 181 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGR 240

Query: 241 GTGKG-----------LQSSNNANIQCYHCKKFGHVKADC-------------------- 300
           GT KG           +QSSN ANIQCYH KKFGHVKADC                    
Sbjct: 241 GTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADCCDQKTAEVCFIDSGCSNHMT 300

Query: 301 -LKPVFKELNEGEKLKVELGNSKELQVEGKGTVGIETHHGNRILTNVQYVPDIGYNLLSV 315
            LKP+F ELNEGEKLKVELGN+KELQVE KGTVGIETHHGNRILTNVQYVPDIGYNLLSV
Sbjct: 301 GLKPIFNELNEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYVPDIGYNLLSV 360

[Close]

BLAST of Pay0003401 vs. NCBI nr
Match: TYK12002.1 (UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 451.8 bits (1161), Expect = 6.3e-123
Identity = 261/394 (66.24%), Postives = 280/394 (71.07%), Query Frame = 0


Query: 31  DLVEQGYADPDDEGKLRENMKKDSKALVITQQAVHDS---------------CILQKAFQ 90
           +LVEQGYADPDDEGKLR N KKDSK LVI QQAVHDS                ILQK FQ
Sbjct: 2   NLVEQGYADPDDEGKLRMNKKKDSKVLVIIQQAVHDSVFSQIVIATTSKQAWLILQKEFQ 61

Query: 91  GDSRVLVVKLQSLRRDFETLMMKNGESI-------------MQTYGEAIKDQTIVEKVLR 150
           GDSRVLVVKLQSLRRDFETLMMKNGESI             MQTY E IKD TIVEKVLR
Sbjct: 62  GDSRVLVVKLQSLRRDFETLMMKNGESIADFLSRATTIISQMQTYSETIKDHTIVEKVLR 121

Query: 151 SLTPKFDHVVVAIEESKNLSTFTFIELMGSLEAHESRINRSMERNEEKAFQVKDIVPKYN 210
           SLTPKFDHVV  IEESK+LSTFTFIELMGSL+AHESRINRSMERNEEKAFQVKD+V KYN
Sbjct: 122 SLTPKFDHVVATIEESKDLSTFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVLKYN 181

Query: 211 DNDRVMTRGRGRGRYRGRGRGTGK-----------GLQSSNNANIQCYHCKKFGHVKADC 270
           D+DRV TRGRGRG YRGRG G  K           G+QSSN ANIQCYH KKFGHVKADC
Sbjct: 182 DSDRVTTRGRGRGGYRGRGCGIEKGCNQNEEQRQFGVQSSNKANIQCYHFKKFGHVKADC 241

Query: 271 ----LKPVFKELNEGEKL--KVELGNSKELQVEGKGTVGIETHHGNRILTNVQYVPDIGY 330
                +   ++  E +++  +VELGN KELQVEGKGTVGIETHHGNRILT          
Sbjct: 242 WYKNQRANSQQRMEHQRIMERVELGNGKELQVEGKGTVGIETHHGNRILT---------- 301

Query: 331 NLLSVGQLMESGYSILFDDGACLIKNK-QTERKFKHFKTKVEKQSDMSIKSLRSDRSGEF 379
                                 + K+K +T  KFKHFK KVEKQS M IKSLRSDR GEF
Sbjct: 302 ----------------------MFKSKSETFEKFKHFKAKVEKQSGMFIKSLRSDRGGEF 361

The following BLAST results are available for this feature:

BLAST of Pay0003401 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.4e-18	43.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	4.6e-07	33.33	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q07163	3.3e-05	31.71	Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae OX=4932 GN=TY1B ...	[more]
O13527	3.3e-05	31.71	Truncated transposon Ty1-A Gag-Pol polyprotein OS=Saccharomyces cerevisiae (stra...	[more]
Q12490	3.3e-05	31.71	Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 2...	[more]

BLAST of Pay0003401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DWP2	2.0e-162	55.89	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DWC7	2.6e-162	58.50	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UQM0	7.2e-157	61.70	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00340 ...	[more]
A0A5D3CL10	3.1e-123	66.24	UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TZP7	5.4e-120	67.26	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Pay0003401 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27735.1	4.1e-162	55.89	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
TYK28117.1	5.3e-162	58.50	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0055915.1	1.5e-156	61.70	copia protein [Cucumis melo var. makuwa]	[more]
KAE8650579.1	6.5e-136	71.88	hypothetical protein Csa_010963 [Cucumis sativus]	[more]
TYK12002.1	6.3e-123	66.24	UBN2 domain-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0003401 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 217..233 e-value: 0.0085 score: 24.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 218..231 score: 8.976924
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 305..419 e-value: 5.3E-22 score: 80.3
None	No IPR available	GENE3D	4.10.60.10		coord: 187..244 e-value: 4.3E-6 score: 28.5
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 104..161 e-value: 9.5E-7 score: 28.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..209
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 21..310
None	No IPR available	PANTHER	PTHR34222:SF30	SUBFAMILY NOT NAMED	coord: 21..310
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 334..419 score: 12.339794
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 201..233
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 307..405

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0003401.1	Pay0003401.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding