Pay0003385 (gene) Melon (Payzawat) v1

Overview
NamePay0003385
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase
Locationchr12: 12281365 .. 12281981 (+)
RNA-Seq ExpressionPay0003385
SyntenyPay0003385
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCTACATCAAGTTCCTGAAAGACATCTTGGCAAAGAAGAGGAAGATTAATGATTTTGAGACTGTAGCTCTAACGCAAGCAACAAACGACGACTTTAAGAATGGAGTGCCAGAGAAGATGACAGATCCTAGAAGCTTCACGGTTTCCTACTCAAAAGGTGGAATGGATTTAGGTTGTGCTCTATGCGACCTTGGGGCAAGCATCAATTTGATGCCTCTCTCTATCTTCAAGAAAGTAGGGATAGGGGAGGTACAACCAACTCATATAAGGCTTTAATTTGCTGACAGATCCATTGCTAGCCAGAGGGCAAGATTGAAGATGTTTTGGTGAAAGTGGACAAGTTTTTGTTTTCCGAAGACTTTGTTATTCTGGATTACAAAGCTGATCGGAAGGTTCCTATCATTTTAGGGCGGCCATTCCTATCAACTAGTTGCACCCTCATAGGCGTCCACCAAGGGGAGTTGACAATGCATTTTAATGATGAGGAGATTAAGTTCAACGTTGTCAAACCGATGAAATTTCCCTCTGATGTTGAGAATTATAGCGCAATAAAGTCCTTTGGATGGGACTATTGCGAGGAAGAAGCCTATTATGAGTTGTTTAACACTTAA

mRNA sequence

ATGTCCTCCTACATCAAGTTCCTGAAAGACATCTTGGCAAAGAAGAGGAAGATTAATGATTTTGAGACTGTAGCTCTAACGCAAGCAACAAACGACGACTTTAAGAATGGAGTGCCAGAGAAGATGACAGATCCTAGAAGCTTCACGGTTTCCTACTCAAAAGGTGGAATGGATTTAGGTTGTGCTCTATGCGACCTTGGGGCAAGCATCAATTTGATGCCTCTCTCTATCTTCAAGAAAGTAGGGATAGGGGAGCCAGAGGGCAAGATTGAAGATGTTTTGGTGAAAGTGGACAAGTTTTTGTTTTCCGAAGACTTTGTTATTCTGGATTACAAAGCTGATCGGAAGGTTCCTATCATTTTAGGGCGGCCATTCCTATCAACTAGTTGCACCCTCATAGGCGTCCACCAAGGGGAGTTGACAATGCATTTTAATGATGAGGAGATTAAGTTCAACGTTGTCAAACCGATGAAATTTCCCTCTGATGTTGAGAATTATAGCGCAATAAAGTCCTTTGGATGGGACTATTGCGAGGAAGAAGCCTATTATGAGTTGTTTAACACTTAA

Coding sequence (CDS)

ATGTCCTCCTACATCAAGTTCCTGAAAGACATCTTGGCAAAGAAGAGGAAGATTAATGATTTTGAGACTGTAGCTCTAACGCAAGCAACAAACGACGACTTTAAGAATGGAGTGCCAGAGAAGATGACAGATCCTAGAAGCTTCACGGTTTCCTACTCAAAAGGTGGAATGGATTTAGGTTGTGCTCTATGCGACCTTGGGGCAAGCATCAATTTGATGCCTCTCTCTATCTTCAAGAAAGTAGGGATAGGGGAGCCAGAGGGCAAGATTGAAGATGTTTTGGTGAAAGTGGACAAGTTTTTGTTTTCCGAAGACTTTGTTATTCTGGATTACAAAGCTGATCGGAAGGTTCCTATCATTTTAGGGCGGCCATTCCTATCAACTAGTTGCACCCTCATAGGCGTCCACCAAGGGGAGTTGACAATGCATTTTAATGATGAGGAGATTAAGTTCAACGTTGTCAAACCGATGAAATTTCCCTCTGATGTTGAGAATTATAGCGCAATAAAGTCCTTTGGATGGGACTATTGCGAGGAAGAAGCCTATTATGAGTTGTTTAACACTTAA

Protein sequence

MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLGCALCDLGASINLMPLSIFKKVGIGEPEGKIEDVLVKVDKFLFSEDFVILDYKADRKVPIILGRPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDVENYSAIKSFGWDYCEEEAYYELFNT
Homology
BLAST of Pay0003385 vs. ExPASy TrEMBL
Match: A0A5D3DPZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00150 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.1e-100
Identity = 186/188 (98.94%), Postives = 186/188 (98.94%), Query Frame = 0

Query: 1   MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLG 60
           MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLG
Sbjct: 1   MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLG 60

Query: 61  CALCDLGASINLMPLSIFKKVGIGEPEGKIEDVLVKVDKFLFSEDFVILDYKADRKVPII 120
           CALCDLGASINLMPLSIFKKVGIG  EGKIEDVLVKVDKFLFSEDFVILDYKADRKVPII
Sbjct: 61  CALCDLGASINLMPLSIFKKVGIG--EGKIEDVLVKVDKFLFSEDFVILDYKADRKVPII 120

Query: 121 LGRPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDVENYSAIKSFGWDYCEEE 180
           LGRPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDVENYSAIKSFGWDYCEEE
Sbjct: 121 LGRPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDVENYSAIKSFGWDYCEEE 180

Query: 181 AYYELFNT 189
           AYYELFNT
Sbjct: 181 AYYELFNT 186

BLAST of Pay0003385 vs. ExPASy TrEMBL
Match: A0A5D3CA15 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00120 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 9.7e-61
Identity = 126/185 (68.11%), Postives = 139/185 (75.14%), Query Frame = 0

Query: 3   SYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLGCA 62
           SY+KFLKDIL KKR+INDFE + LTQA +D  KN VPEKM D  S  +  S GGMDLGCA
Sbjct: 32  SYVKFLKDILGKKRRINDFEIMTLTQAISDVLKNRVPEKMIDLGSLIIPCSIGGMDLGCA 91

Query: 63  LCDLGASINLMPLSIFKKVGIGEPEGKIEDVLVKVDKFLFSEDFVILDYKADRKVPIILG 122
           LCDLG +INL PLSIFKK+  GE           VDKFLF  DFVILDYK + +VPIILG
Sbjct: 92  LCDLGETINLRPLSIFKKLETGE-----------VDKFLFLVDFVILDYKENLEVPIILG 151

Query: 123 RPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDVENYSAIKSFGWDYCEEEAY 182
           R F STSC LI VHQ ELTM FNDEEIKFNVV  MKFP DVENY+AI+S GWDYC+E+AY
Sbjct: 152 RLFPSTSCALIDVHQEELTMRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAY 205

Query: 183 YELFN 188
           Y  FN
Sbjct: 212 YGRFN 205

BLAST of Pay0003385 vs. ExPASy TrEMBL
Match: A0A1S3BHX3 (uncharacterized protein LOC103490055 OS=Cucumis melo OX=3656 GN=LOC103490055 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 4.8e-52
Identity = 118/188 (62.77%), Postives = 136/188 (72.34%), Query Frame = 0

Query: 1   MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLG 60
           M SY KFL DILAKKR+INDF+T+AL QAT+D +KNGV EKMT P SF V  S  GMDLG
Sbjct: 1   MPSYAKFLTDILAKKRRINDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLG 60

Query: 61  CALCDLGASINLMPLSIFKKVGIGE-----------------PEGKIEDVLVKVDKFLFS 120
             LCDLGASINLMPLSIFKK+ I E                 P+GKIEDVLVKVDKFLF 
Sbjct: 61  HVLCDLGASINLMPLSIFKKLKIKEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFF 120

Query: 121 EDFVILDYKADRKVPIILGRPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDV 172
            DF+ILDY+AD +V IIL R FLST   L  +HQGELT+ FN++EIKFNV+  MKFP D 
Sbjct: 121 ADFIILDYEADEEVLIILRRLFLSTGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDD 180

BLAST of Pay0003385 vs. ExPASy TrEMBL
Match: A0A5D3BDT2 (RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00330 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.4e-51
Identity = 117/187 (62.57%), Postives = 133/187 (71.12%), Query Frame = 0

Query: 1   MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLG 60
           M SY KFL DILAKKR+INDF+T+AL QAT+D +KNGV EKMT P SF V  S  GMDLG
Sbjct: 1   MPSYAKFLTDILAKKRRINDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLG 60

Query: 61  CALCDLGASINLMPLSIFKKVGIGE-----------------PEGKIEDVLVKVDKFLFS 120
             LCDLGASINLMPLSIFKK+ I E                 P+GKIEDVLVKVDKFLF 
Sbjct: 61  HVLCDLGASINLMPLSIFKKLKIKEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFF 120

Query: 121 EDFVILDYKADRKVPIILGRPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDV 171
            DF+ILDY+AD +V IIL R FLST   L  +HQGELT+ FN++EIKFNV+  MKFP D 
Sbjct: 121 ADFIILDYEADEEVLIILRRLFLSTGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDD 180

BLAST of Pay0003385 vs. ExPASy TrEMBL
Match: A0A5A7VJ95 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00710 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 3.5e-50
Identity = 112/179 (62.57%), Postives = 129/179 (72.07%), Query Frame = 0

Query: 12  LAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLGCALCDLGASIN 71
           +AKK + ND ETVALT  T+D  KNG P+KMTD RSFTV  S   MDLG  LCDLGASIN
Sbjct: 90  MAKKGRNNDCETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASIN 149

Query: 72  LMPLSIFKKV-----------------GIGEPEGKIEDVLVKVDKFLFSEDFVILDYKAD 131
           LMPLSIFKK+                  I + EGKIED+LVKVDKFLF  DF+ILDY+A+
Sbjct: 150 LMPLSIFKKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEAN 209

Query: 132 RKVPIILGRPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDVENYSAIKSFG 174
           ++VPII GRPFLST   LI VHQGELTM FND E+KFNV+  MKFP+D +NYS I+S G
Sbjct: 210 QEVPIIFGRPFLSTGHALIDVHQGELTMRFND-EVKFNVMNAMKFPTDDKNYSMIESLG 267

BLAST of Pay0003385 vs. NCBI nr
Match: KAA0035429.1 (uncharacterized protein E6C27_scaffold285G00480 [Cucumis melo var. makuwa] >TYK25723.1 uncharacterized protein E5676_scaffold862G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 374.8 bits (961), Expect = 4.4e-100
Identity = 186/188 (98.94%), Postives = 186/188 (98.94%), Query Frame = 0

Query: 1   MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLG 60
           MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLG
Sbjct: 1   MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLG 60

Query: 61  CALCDLGASINLMPLSIFKKVGIGEPEGKIEDVLVKVDKFLFSEDFVILDYKADRKVPII 120
           CALCDLGASINLMPLSIFKKVGIG  EGKIEDVLVKVDKFLFSEDFVILDYKADRKVPII
Sbjct: 61  CALCDLGASINLMPLSIFKKVGIG--EGKIEDVLVKVDKFLFSEDFVILDYKADRKVPII 120

Query: 121 LGRPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDVENYSAIKSFGWDYCEEE 180
           LGRPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDVENYSAIKSFGWDYCEEE
Sbjct: 121 LGRPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDVENYSAIKSFGWDYCEEE 180

Query: 181 AYYELFNT 189
           AYYELFNT
Sbjct: 181 AYYELFNT 186

BLAST of Pay0003385 vs. NCBI nr
Match: KAA0065469.1 (uncharacterized protein E6C27_scaffold17G001650 [Cucumis melo var. makuwa] >TYK08711.1 uncharacterized protein E5676_scaffold76G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 243.0 bits (619), Expect = 2.0e-60
Identity = 126/185 (68.11%), Postives = 139/185 (75.14%), Query Frame = 0

Query: 3   SYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLGCA 62
           SY+KFLKDIL KKR+INDFE + LTQA +D  KN VPEKM D  S  +  S GGMDLGCA
Sbjct: 32  SYVKFLKDILGKKRRINDFEIMTLTQAISDVLKNRVPEKMIDLGSLIIPCSIGGMDLGCA 91

Query: 63  LCDLGASINLMPLSIFKKVGIGEPEGKIEDVLVKVDKFLFSEDFVILDYKADRKVPIILG 122
           LCDLG +INL PLSIFKK+  GE           VDKFLF  DFVILDYK + +VPIILG
Sbjct: 92  LCDLGETINLRPLSIFKKLETGE-----------VDKFLFLVDFVILDYKENLEVPIILG 151

Query: 123 RPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDVENYSAIKSFGWDYCEEEAY 182
           R F STSC LI VHQ ELTM FNDEEIKFNVV  MKFP DVENY+AI+S GWDYC+E+AY
Sbjct: 152 RLFPSTSCALIDVHQEELTMRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAY 205

Query: 183 YELFN 188
           Y  FN
Sbjct: 212 YGRFN 205

BLAST of Pay0003385 vs. NCBI nr
Match: XP_030477929.1 (uncharacterized protein LOC115694963 [Cannabis sativa])

HSP 1 Score: 215.3 bits (547), Expect = 4.5e-52
Identity = 109/186 (58.60%), Postives = 134/186 (72.04%), Query Frame = 0

Query: 1   MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLG 60
           M +Y+KFLKDIL KKR++ +FETVALT+  +   K+ +P K+ DP SFT+  S GG D+G
Sbjct: 29  MPNYVKFLKDILTKKRRLGEFETVALTEGCSAMLKSKIPPKLKDPGSFTIPCSIGGRDVG 88

Query: 61  CALCDLGASINLMPLSIFKKVGIGE-----------------PEGKIEDVLVKVDKFLFS 120
            ALCDLGASINLMP+SIFKK+GIGE                 PEGKIEDVLV+VDKF+F 
Sbjct: 89  RALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFP 148

Query: 121 EDFVILDYKADRKVPIILGRPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDV 170
            DF+ILDY+ADR VPIILGRPFL+T  TLI V  GELTM  ND+++ FNV   M+FP ++
Sbjct: 149 ADFIILDYEADRDVPIILGRPFLATGRTLIDVQNGELTMRVNDQKVTFNVFNAMRFPDEI 208

BLAST of Pay0003385 vs. NCBI nr
Match: XP_030478287.1 (uncharacterized protein LOC115695357 [Cannabis sativa])

HSP 1 Score: 215.3 bits (547), Expect = 4.5e-52
Identity = 109/186 (58.60%), Postives = 134/186 (72.04%), Query Frame = 0

Query: 1   MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLG 60
           M +Y+KFLKDIL KKR++ +FETVALT+  +   K+ +P K+ DP SFT+  S GG D+G
Sbjct: 50  MPNYVKFLKDILTKKRRLGEFETVALTEGCSAMLKSKIPPKLKDPGSFTIPCSIGGRDVG 109

Query: 61  CALCDLGASINLMPLSIFKKVGIGE-----------------PEGKIEDVLVKVDKFLFS 120
            ALCDLGASINLMP+SIFKK+GIGE                 PEGKIEDVLV+VDKF+F 
Sbjct: 110 RALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFP 169

Query: 121 EDFVILDYKADRKVPIILGRPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDV 170
            DF+ILDY+ADR VPIILGRPFL+T  TLI V  GELTM  ND+++ FNV   M+FP ++
Sbjct: 170 ADFIILDYEADRDVPIILGRPFLATGRTLIDVQNGELTMRVNDQKVTFNVFNAMRFPDEI 229

BLAST of Pay0003385 vs. NCBI nr
Match: XP_008447648.1 (PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 1.0e-51
Identity = 118/188 (62.77%), Postives = 136/188 (72.34%), Query Frame = 0

Query: 1   MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLG 60
           M SY KFL DILAKKR+INDF+T+AL QAT+D +KNGV EKMT P SF V  S  GMDLG
Sbjct: 1   MPSYAKFLTDILAKKRRINDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLG 60

Query: 61  CALCDLGASINLMPLSIFKKVGIGE-----------------PEGKIEDVLVKVDKFLFS 120
             LCDLGASINLMPLSIFKK+ I E                 P+GKIEDVLVKVDKFLF 
Sbjct: 61  HVLCDLGASINLMPLSIFKKLKIKEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFF 120

Query: 121 EDFVILDYKADRKVPIILGRPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKPMKFPSDV 172
            DF+ILDY+AD +V IIL R FLST   L  +HQGELT+ FN++EIKFNV+  MKFP D 
Sbjct: 121 ADFIILDYEADEEVLIILRRLFLSTGRALTYIHQGELTVFFNNKEIKFNVINAMKFPLDD 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DPZ22.1e-10098.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CA159.7e-6168.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BHX34.8e-5262.77uncharacterized protein LOC103490055 OS=Cucumis melo OX=3656 GN=LOC103490055 PE=... [more]
A0A5D3BDT22.4e-5162.57RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7VJ953.5e-5062.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0035429.14.4e-10098.94uncharacterized protein E6C27_scaffold285G00480 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0065469.12.0e-6068.11uncharacterized protein E6C27_scaffold17G001650 [Cucumis melo var. makuwa] >TYK0... [more]
XP_030477929.14.5e-5258.60uncharacterized protein LOC115694963 [Cannabis sativa][more]
XP_030478287.14.5e-5258.60uncharacterized protein LOC115695357 [Cannabis sativa][more]
XP_008447648.11.0e-5162.77PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 25..155
e-value: 1.8E-15
score: 58.8
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 4..165
NoneNo IPR availablePANTHERPTHR33067:SF28SUBFAMILY NOT NAMEDcoord: 4..165
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 62..126
e-value: 5.9335E-9
score: 49.2572

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0003385.1Pay0003385.1mRNA