Pay0003357 (gene) Melon (Payzawat) v1

Overview


Name	Pay0003357
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Protein GLE1
Location	chr04: 15252648 .. 15254514 (+)
RNA-Seq Expression	Pay0003357
Synteny	Pay0003357

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGGTCGCTAACTACCAAACCAGTAAACTCAGTTGGCCAACCTGAAGGGACTGCTCCGGATGAAACATTTGTGTCAAAATCACCAGGTGACTTTCAATATGAATAATTGGACATCAGTTGTGATTTTGATCCTGCCATTTGTGTATTACCATAGGTTTGAACCAGATATGCTAGCATTCTCAGGTTTCTATTATGGTGGAGGTAAAAAGGAAAGGAGAGAATTTGGAGCTATTCGAAGGCGATGGAAAACATTACATGTAAGGGGTCTTAGTTTTAATTATGTGAATCCATTTGTTTGATTTGATTTATTTACAGAAAAATCCAATACTTCTCATCAACATTTGCAGGTCAATTGTTGTGAAATGAAATTGACCAGCCCAATGGCTTTTGTGTTTGAATATTTATGAGGGGCATAATTAATCCTTATCTGGGGAATGTAGTAAATAGCATAGCGATATTGGATTGAGTCTTGTATAGAATTCTTGTGTTGGCAAAAATTTGTCTCTGATATCTATACATTCTGATATTAAGATGAGTCTAATTTATAAGTTCTAGTTTAAATTTAGATGACAACTATTAATGCCTTTTATGATCTATTGTATAAAACTGATTCAAATTTATTTCAGCAAGTAAGCAACCTTGATAAAGAAAGGAGGCATGGAAAATGTCCACCGACTCCAGAAGAGGTTTGTTTGATGCTGAGAGCACTCGGATATGGGCAGGATGTTTATATCCTTCAATTTGGCTTGAATATGTGCCTCTATGGCCCTTAAATCTCCATGATTTTTTGCTTTCCATGGCTTTTAGGTCCTCTGATGCCGCCACATCACCAAATTTGCTTTCTTTGGCTACTTTTAGCACTAATTGTCGCCTACCACTGACACCCACTTTGTCATCTTTTGGTCTTAGGCTCTTGAAATCTTCAACTAGATCATCTAAGGTTTGTTGGGGTTGGTCCTTTTTTTTTTTATAGTTTTTTGGTTTTTTGCTGGTGTTTATCTTGTTGATGTACTGATGCAAAGCTATTTTTAACTTATTTGTTTATTTATTTATGAACTTGTATTTATGGAGTTTTCTTCTGTCAAGCTTTCTTGGTTTTGCTTTCTTTCGGTGGCTTTTTTGTTAAGGAATTTGTTGTGAATAAATTTGCTTAAGGATTTTTGTTTGCTTCCTTTTTGGTTTATGAAGATTTTTGGTAATTTAAAATAAAGATTTTTTGTGTTGGGGATTATTCAGTCTGCTTGTATGTTTCTCTAAGTACGTAGGTTAAGGGTGCTTATTGAGATTAACTAGAGCTGTCAATATATTTAAGCATATGCAGAAAAATAGAAACTTGAATTGTAGTCCTTCAATTAGAACATATAATCTACTTTTTACTGCATTTTTGAGTCGATGTCGTAATACTTATTTTTTCTCAATTGTACTTGTGTATCAATTGAAGGTTTAGGACTTACAAGTGCCATTTACTAAAAGGTTAAAACCCTATGATATTTATCCAGATGCTCAGCTTCATATAGTTCTAAATTAAGAAGATCATTAGTGCTTACCTTTTGTGGTCACACACGGCTTATAAATGCTACAATTATTAGACAATCAGTGAGGTTAGCTTCTTGAGACTCTTTTAATATCTTATATATGTTTTCCTTTTCAATGACTAAAAAATTCTTTGTGGGAGTTGAATAACAAGATATCTTCTCCAAAGGATGTTTGAGAATAGTTGCTATGATAGAAGATGTTCTATATACAACGTTATTTTATCACTCTCATTGAAGTACTAAATATATATATGGTTTTAGGAGAAACATAGAATGCTCAAACATCCTGTACTTCTAGATTTTTTGACCATGAGAAACATTCTTTAA

mRNA sequence

ATGGTTAGGTCGCTAACTACCAAACCAGTAAACTCAGTTGGCCAACCTGAAGGGACTGCTCCGGATGAAACATTTGTGTCAAAATCACCAGCAACCTTGATAAAGAAAGGAGGCATGGAAAATGTCCACCGACTCCAGAAGAGGTCCTCTGATGCCGCCACATCACCAAATTTGCTTTCTTTGGCTACTTTTAGCACTAATTGTCGCCTACCACTGACACCCACTTTGTCATCTTTTGGTCTTAGGCTCTTGAAATCTTCAACTAGATCATCTAAGGAGAAACATAGAATGCTCAAACATCCTGTACTTCTAGATTTTTTGACCATGAGAAACATTCTTTAA

Coding sequence (CDS)

ATGGTTAGGTCGCTAACTACCAAACCAGTAAACTCAGTTGGCCAACCTGAAGGGACTGCTCCGGATGAAACATTTGTGTCAAAATCACCAGCAACCTTGATAAAGAAAGGAGGCATGGAAAATGTCCACCGACTCCAGAAGAGGTCCTCTGATGCCGCCACATCACCAAATTTGCTTTCTTTGGCTACTTTTAGCACTAATTGTCGCCTACCACTGACACCCACTTTGTCATCTTTTGGTCTTAGGCTCTTGAAATCTTCAACTAGATCATCTAAGGAGAAACATAGAATGCTCAAACATCCTGTACTTCTAGATTTTTTGACCATGAGAAACATTCTTTAA

Protein sequence

MVRSLTTKPVNSVGQPEGTAPDETFVSKSPATLIKKGGMENVHRLQKRSSDAATSPNLLSLATFSTNCRLPLTPTLSSFGLRLLKSSTRSSKEKHRMLKHPVLLDFLTMRNIL

Homology

[Close]

BLAST of Pay0003357 vs. ExPASy TrEMBL
Match: A0A5A7SVZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold346G00230 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-06
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 38 GMENVH----RLQKRSSDAATSPNLLSLATFSTNCRLPLTPTLSSFGLRLLKSSTRSSK 93
          G  N+H     +  RSSDAA  PNLLS A+FS++CR   TPT SS GLRL KSSTRSSK
Sbjct: 20 GPRNLHDSLPSIASRSSDAAAPPNLLSSASFSSDCRPAATPTSSSSGLRLSKSSTRSSK 78

[Close]

BLAST of Pay0003357 vs. ExPASy TrEMBL
Match: A0A1S3CHN5 (uncharacterized protein LOC103501034 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501034 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-06
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 38 GMENVH----RLQKRSSDAATSPNLLSLATFSTNCRLPLTPTLSSFGLRLLKSSTRSSK 93
          G  N+H     +  RSSDAA  PNLLS A+FS++CR   TPT SS GLRL KSSTRSSK
Sbjct: 20 GPRNLHDSLPSIASRSSDAAAPPNLLSSASFSSDCRPAATPTSSSSGLRLSKSSTRSSK 78

[Close]

BLAST of Pay0003357 vs. ExPASy TrEMBL
Match: A0A1S3BEB8 (protein GLE1 OS=Cucumis melo OX=3656 GN=LOC103488947 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MVRSLTTKPVNSVGQPEGTAPDETFVSKSPATLIK 36
           MV SL TKPVNSVGQP+GTAPDETFVSKSP ++++
Sbjct: 296 MVGSLATKPVNSVGQPKGTAPDETFVSKSPDSMVR 330

[Close]

BLAST of Pay0003357 vs. ExPASy TrEMBL
Match: A0A5A7SUC8 (Protein GLE1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001690 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MVRSLTTKPVNSVGQPEGTAPDETFVSKSPATLIK 36
           MV SL TKPVNSVGQP+GTAPDETFVSKSP ++++
Sbjct: 342 MVGSLATKPVNSVGQPKGTAPDETFVSKSPDSMVR 376

[Close]

BLAST of Pay0003357 vs. ExPASy TrEMBL
Match: A0A0A0LXX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G124000 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 35/59 (59.32%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 38 GMENVH----RLQKRSSDAATSPNLLSLATFSTNCRLPLTPTLSSFGLRLLKSSTRSSK 93
          G  N+H     +  RSSDA   PNLLS A+FS++CR   TPT SS GLRL KSSTRSSK
Sbjct: 20 GPRNLHDSLPSMASRSSDAVAPPNLLSSASFSSDCRPSATPTSSSSGLRLSKSSTRSSK 78

[Close]

BLAST of Pay0003357 vs. NCBI nr
Match: XP_008462750.1 (PREDICTED: uncharacterized protein LOC103501034 isoform X1 [Cucumis melo] >KAA0035200.1 uncharacterized protein E6C27_scaffold346G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 38 GMENVH----RLQKRSSDAATSPNLLSLATFSTNCRLPLTPTLSSFGLRLLKSSTRSSK 93
          G  N+H     +  RSSDAA  PNLLS A+FS++CR   TPT SS GLRL KSSTRSSK
Sbjct: 20 GPRNLHDSLPSIASRSSDAAAPPNLLSSASFSSDCRPAATPTSSSSGLRLSKSSTRSSK 78

[Close]

BLAST of Pay0003357 vs. NCBI nr
Match: KAA0034248.1 (protein GLE1 [Cucumis melo var. makuwa] >TYK15672.1 protein GLE1 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-05
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MVRSLTTKPVNSVGQPEGTAPDETFVSKSPATLIK 36
           MV SL TKPVNSVGQP+GTAPDETFVSKSP ++++
Sbjct: 342 MVGSLATKPVNSVGQPKGTAPDETFVSKSPDSMVR 376

[Close]

BLAST of Pay0003357 vs. NCBI nr
Match: XP_008446132.1 (PREDICTED: protein GLE1 [Cucumis melo] >XP_008446133.1 PREDICTED: protein GLE1 [Cucumis melo] >XP_016900272.1 PREDICTED: protein GLE1 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-05
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MVRSLTTKPVNSVGQPEGTAPDETFVSKSPATLIK 36
           MV SL TKPVNSVGQP+GTAPDETFVSKSP ++++
Sbjct: 296 MVGSLATKPVNSVGQPKGTAPDETFVSKSPDSMVR 330

[Close]

BLAST of Pay0003357 vs. NCBI nr
Match: XP_004139556.1 (E3 ubiquitin-protein ligase WAV3 [Cucumis sativus] >KGN64836.1 hypothetical protein Csa_022746 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-05
Identity = 35/59 (59.32%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 38 GMENVH----RLQKRSSDAATSPNLLSLATFSTNCRLPLTPTLSSFGLRLLKSSTRSSK 93
          G  N+H     +  RSSDA   PNLLS A+FS++CR   TPT SS GLRL KSSTRSSK
Sbjct: 20 GPRNLHDSLPSMASRSSDAVAPPNLLSSASFSSDCRPSATPTSSSSGLRLSKSSTRSSK 78

[Close]

BLAST of Pay0003357 vs. NCBI nr
Match: XP_004135501.1 (protein GLE1 [Cucumis sativus] >XP_031741160.1 protein GLE1 [Cucumis sativus] >KGN51729.1 hypothetical protein Csa_009352 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-04
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   MVRSLTTKPVNSVGQPEGTAPDETFVSKSPATLIK 36
           MV SLTTKPVNSVGQP+GT  DETFVSKSP ++++
Sbjct: 296 MVGSLTTKPVNSVGQPKGTTSDETFVSKSPDSMVR 330

The following BLAST results are available for this feature:

BLAST of Pay0003357 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0003357 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVZ9	5.4e-06	61.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CHN5	5.4e-06	61.02	uncharacterized protein LOC103501034 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BEB8	1.2e-05	77.14	protein GLE1 OS=Cucumis melo OX=3656 GN=LOC103488947 PE=3 SV=1	[more]
A0A5A7SUC8	1.2e-05	77.14	Protein GLE1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001690 P...	[more]
A0A0A0LXX5	1.6e-05	59.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G124000 PE=4 SV=1	[more]

BLAST of Pay0003357 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462750.1	1.1e-05	61.02	PREDICTED: uncharacterized protein LOC103501034 isoform X1 [Cucumis melo] >KAA00...	[more]
KAA0034248.1	2.5e-05	77.14	protein GLE1 [Cucumis melo var. makuwa] >TYK15672.1 protein GLE1 [Cucumis melo v...	[more]
XP_008446132.1	2.5e-05	77.14	PREDICTED: protein GLE1 [Cucumis melo] >XP_008446133.1 PREDICTED: protein GLE1 [...	[more]
XP_004139556.1	3.2e-05	59.32	E3 ubiquitin-protein ligase WAV3 [Cucumis sativus] >KGN64836.1 hypothetical prot...	[more]
XP_004135501.1	1.6e-04	74.29	protein GLE1 [Cucumis sativus] >XP_031741160.1 protein GLE1 [Cucumis sativus] >K...	[more]

BLAST of Pay0003357 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0003357.1	Pay0003357.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016973	poly(A)+ mRNA export from nucleus
biological_process	GO:0015031	protein transport
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006449	regulation of translational termination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0044614	nuclear pore cytoplasmic filaments
molecular_function	GO:0000822	inositol hexakisphosphate binding
molecular_function	GO:0005543	phospholipid binding
molecular_function	GO:0031369	translation initiation factor binding