Pay0003247 (gene) Melon (Payzawat) v1

Overview


Name	Pay0003247
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	cold-inducible RNA-binding protein B
Location	chr12: 3824642 .. 3825844 (+)
RNA-Seq Expression	Pay0003247
Synteny	Pay0003247

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAAAATCGCCAATTGGGATTCGGAAGGAATGGCTAACAGACTTGGCTCGGAGCTGTTCATCAGCAGTAGCTCTCTATCTCTTTCTCACACTCAAACATTTCATAAAAATGGTTTCTCCTCAAATTCTCCATTGATTGTGATTTTTCTTTTCTTTTCTTGCTCAGGACTATCATCATACACAACGATCGAACGACTTAAGAGTCTGTTTTCACCCTTCGGTTCAATCTCTCAAGGTACATATCTCCTCCTTAATCGGTTTTAGTTTCAACTTCTTTTCTCATCAATGGAAATTTCCAATTTCTTCAGCTCGGCTAATTCGTGATCCGGAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCAGTTGAGGCGAAGAAGGCTCTTCAAGCCATGGATGGCCGGGTATGTGTCCTCCACTGCTTATGCACATAACCTGTTCGACGAAATGTCTGACTGAGATTATATATCTTATTTACTTAGTCGCATCTGGAATATGGTTCTGTTTGAACTTTTTATTATTGGGAATTCATTTCAATTGGGTTTTGTGAAAAAATGCCTGCAATATGGATATCTATTGGGTTTGAGTAATATGAGCTTTCAACCAAGATGCTAGTTTTGGTAGCTAGTTTGGATTCATGGATTGTATTTCAAGCTGGGTCAACTGTTAAGGAGATTTATATAAGTTTTGTTCGGATAAATGATGCAGATTGTTGATGGAAGATTGATTTTCGTTGAATTTGCAAAGACTAGGAAACATGGGGTAGATCCTACATCTAGTTAAAGAACATCATTCACGAAAAGACATGGGGATTTGGATATTTGTGCCAGCTTCGGAGTTTAATCCATTTGCGATGTCACTATTAACAAGTCAGATCATTTTGAAAAAAAATAGTAAGATGACGATTGTAATGAGTCTAATGTTCTTATCTCTTCTAGGATAAATGTGTGTGATACTGATAATTTAACTAACTGTCGCCTAGGAATTTAAATCTTTAATTTTGATCTGGTGAACAATTTCATCTCCTAAACTTTTTTGGTTAAAAATTATATCTATGTGATAGTAGTGTTACGATAACATGTTCTTAGGAGAAGGATTACAATAGGGAGTGTTATGATATGTGTGCTTGGAAAAAGGATTATAATAAGGAGTGTTACGATATAATGTATTTGGAGAATAGATTATGATAGGC

mRNA sequence

TGCAAAATCGCCAATTGGGATTCGGAAGGAATGGCTAACAGACTTGGCTCGGAGCTGTTCATCAGCAGACTATCATCATACACAACGATCGAACGACTTAAGAGTCTGTTTTCACCCTTCGGTTCAATCTCTCAAGCTCGGCTAATTCGTGATCCGGAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCAGTTGAGGCGAAGAAGGCTCTTCAAGCCATGGATGGCCGGATTGTTGATGGAAGATTGATTTTCGTTGAATTTGCAAAGACTAGGAAACATGGGGTAGATCCTACATCTAGTTAAAGAACATCATTCACGAAAAGACATGGGGATTTGGATATTTGTGCCAGCTTCGGAGTTTAATCCATTTGCGATGTCACTATTAACAAGTCAGATCATTTTGAAAAAAAATAGTAAGATGACGATTGTAATGAGTCTAATGTTCTTATCTCTTCTAGGATAAATGTGTGTGATACTGATAATTTAACTAACTGTCGCCTAGGAATTTAAATCTTTAATTTTGATCTGGTGAACAATTTCATCTCCTAAACTTTTTTGGTTAAAAATTATATCTATGTGATAGTAGTGTTACGATAACATGTTCTTAGGAGAAGGATTACAATAGGGAGTGTTATGATATGTGTGCTTGGAAAAAGGATTATAATAAGGAGTGTTACGATATAATGTATTTGGAGAATAGATTATGATAGGC

Coding sequence (CDS)

ATGGCTAACAGACTTGGCTCGGAGCTGTTCATCAGCAGACTATCATCATACACAACGATCGAACGACTTAAGAGTCTGTTTTCACCCTTCGGTTCAATCTCTCAAGCTCGGCTAATTCGTGATCCGGAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCAGTTGAGGCGAAGAAGGCTCTTCAAGCCATGGATGGCCGGATTGTTGATGGAAGATTGATTTTCGTTGAATTTGCAAAGACTAGGAAACATGGGGTAGATCCTACATCTAGTTAA

Protein sequence

MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS

Homology

[Close]

BLAST of Pay0003247 vs. ExPASy Swiss-Prot
Match: Q9DED4 (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-13
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 8  ELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQA 67
          +LFI  L+  T  E L+ +FS +G IS+  +++D ET+R +GFGFVTF++P +AK A+ A
Sbjct: 6  KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query: 68 MDGRIVDGRLIFVEFA 84
          M+G+ VDGR I V+ A
Sbjct: 66 MNGKAVDGRQIRVDQA 81

[Close]

BLAST of Pay0003247 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-13
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 7   SELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQ 66
           ++L++S LS  TT + L+  F  FG++    ++ D    RPKGF F+ +++  EA KA+Q
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 67  AMDGRIVDGRLIFVEFAKTR 87
            M G+ +DGR+IFVE AKTR
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of Pay0003247 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-13
Identity = 34/76 (44.74%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 8  ELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQA 67
          +LF+  L+  TT E L+ +FS +G +++  +++D E++R +GFGFVTF++P +AK A+ A
Sbjct: 7  KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 68 MDGRIVDGRLIFVEFA 84
          M+G+ VDGR I V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82

[Close]

BLAST of Pay0003247 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-12
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 5   LGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKA 64
           + S+LFI  LS  TT + L   FS  G + +A+++ D  + R KGFGFVTF S  EA+KA
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 65  LQAMDGRIVDGRLIFVEFAKTRK 88
           L   +G+ ++GR IFV++AK ++
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQ 114

[Close]

BLAST of Pay0003247 vs. ExPASy Swiss-Prot
Match: P60826 (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-12
Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 8  ELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQA 67
          +LF+  LS  T  + L+ +FS +G IS+  +++D ETQR +GFGFVTF++  +AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MDGRIVDGRLIFVEFA 84
          M+G+ VDGR I V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82

[Close]

BLAST of Pay0003247 vs. ExPASy TrEMBL
Match: A0A1S3C5W5 (cold-inducible RNA-binding protein B OS=Cucumis melo OX=3656 GN=LOC103497209 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 8.4e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60
          MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE
Sbjct: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS 96
          AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS 95

[Close]

BLAST of Pay0003247 vs. ExPASy TrEMBL
Match: A0A6J1KF23 (cold-inducible RNA-binding protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111492665 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.0e-39
Identity = 83/94 (88.30%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60
          MANRLG++LFISRLSSYTTIERL++LFSPFGS+S+ARLIRDP+TQRPKGFGFVTFQSP E
Sbjct: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 95
          AKKALQAMDGRIVDGRLIFVEFAKTR HGVD  S
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAAS 94

[Close]

BLAST of Pay0003247 vs. ExPASy TrEMBL
Match: A0A6J1GBJ9 (cold-inducible RNA-binding protein B-like OS=Cucurbita moschata OX=3662 GN=LOC111452474 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.0e-39
Identity = 83/94 (88.30%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60
          MANRLG++LFISRLSSYTTIERL++LFSPFGS+S+ARLIRDP+TQRPKGFGFVTFQSP E
Sbjct: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 95
          AKKALQAMDGRIVDGRLIFVEFAKTR HGVD  S
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAAS 94

[Close]

BLAST of Pay0003247 vs. ExPASy TrEMBL
Match: A0A0A0KQ26 (Cold-inducible RNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_5G593310 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.1e-36
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60
          MANRLGSELFISRLSSYTT+ERLK+LFSPFGSIS+ARLIRDP+T+RPKGFGFVTFQSP E
Sbjct: 1  MANRLGSELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHG 90
          AKKAL+AMDGRIVDGRLIFVEFAKT   G
Sbjct: 61 AKKALKAMDGRIVDGRLIFVEFAKTGDMG 89

[Close]

BLAST of Pay0003247 vs. ExPASy TrEMBL
Match: A0A6J1DM71 (small RNA-binding protein 11, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022472 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.6e-33
Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60
          MAN +GS++FISRLSSYTTIERLKSLFS FG++S+ARL+RDP+T RPKGFGFVTFQSPVE
Sbjct: 1  MANGVGSQVFISRLSSYTTIERLKSLFSVFGAVSEARLVRDPKTHRPKGFGFVTFQSPVE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGV 91
          A+KA++AM+GRIVDGRLIFVEFA TR  GV
Sbjct: 61 AEKAIRAMNGRIVDGRLIFVEFANTRGRGV 90

[Close]

BLAST of Pay0003247 vs. NCBI nr
Match: XP_008457543.1 (PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 1.7e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60
          MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE
Sbjct: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS 96
          AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS 95

[Close]

BLAST of Pay0003247 vs. NCBI nr
Match: XP_004135289.2 (small RNA-binding protein 11, chloroplastic [Cucumis sativus] >KAE8648688.1 hypothetical protein Csa_008079 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 3.1e-41
Identity = 87/95 (91.58%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60
          MANRLGSELFISRLSSYTT+ERLK+LFSPFGSIS+ARLIRDP+T+RPKGFGFVTFQSP E
Sbjct: 1  MANRLGSELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS 96
          AKKAL+AMDGRIVDGRLIFVEFAKT KHGVDPTSS
Sbjct: 61 AKKALKAMDGRIVDGRLIFVEFAKTEKHGVDPTSS 95

[Close]

BLAST of Pay0003247 vs. NCBI nr
Match: XP_038895198.1 (small RNA-binding protein 11, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 84/94 (89.36%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1   MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60
           MANR+GS+LFISRLSSYTTIERL+SLFSPFGS+S+ARLIRDP+TQRPKGFGFVTFQSPVE
Sbjct: 12  MANRVGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVE 71

Query: 61  AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 95
           AKKALQAM+GRIVDGRLIFVEFAKTR+HGVD  S
Sbjct: 72  AKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAAS 105

[Close]

BLAST of Pay0003247 vs. NCBI nr
Match: XP_022949004.1 (cold-inducible RNA-binding protein B-like [Cucurbita moschata] >XP_022997823.1 cold-inducible RNA-binding protein B-like [Cucurbita maxima])

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-38
Identity = 83/94 (88.30%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60
          MANRLG++LFISRLSSYTTIERL++LFSPFGS+S+ARLIRDP+TQRPKGFGFVTFQSP E
Sbjct: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 95
          AKKALQAMDGRIVDGRLIFVEFAKTR HGVD  S
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAAS 94

[Close]

BLAST of Pay0003247 vs. NCBI nr
Match: KAG6607208.1 (Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036894.1 Cold-inducible RNA-binding protein B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.8 bits (421), Expect = 9.2e-38
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60
          MANRLG++LFISRLSSYTTIERL++LFSPFGS+S+ARLIRDP+TQRPKGFGFVTFQSP E
Sbjct: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 95
          AKKALQAMDGRIVDGRLIFVEFAKT  HGVD  S
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAAS 94

[Close]

BLAST of Pay0003247 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 122.1 bits (305), Expect = 2.4e-28
Identity = 57/84 (67.86%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60
          MA R+ ++LF+SRLS+YTT + L+ LFSPFG I +ARLIRD ETQRPKGFGF+TF S  +
Sbjct: 1  MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDD 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAK 85
          A+KAL+++DG+IVDGRLIFVE AK
Sbjct: 61 ARKALKSLDGKIVDGRLIFVEVAK 84

[Close]

BLAST of Pay0003247 vs. TAIR 10
Match: AT5G59860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-18
Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 12  SRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQAMDGR 71
           S LS+YTT + L+ LF+PF     ARLI+D +TQRPKGFGF+TF+S  +A+KAL+A++G+
Sbjct: 76  SGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 135

Query: 72  IVDGRLIFVEFAK 85
           IV+GRLIFVE AK
Sbjct: 136 IVNGRLIFVETAK 143

[Close]

BLAST of Pay0003247 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 7   SELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQ 66
           ++L++S LS  TT + L+  F  FG++    ++ D    RPKGF F+ +++  EA KA+Q
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 67  AMDGRIVDGRLIFVEFAKTR 87
            M G+ +DGR+IFVE AKTR
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of Pay0003247 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 73.9 bits (180), Expect = 7.6e-14
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 5   LGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKA 64
           + S+LFI  LS  TT + L   FS  G + +A+++ D  + R KGFGFVTF S  EA+KA
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 65  LQAMDGRIVDGRLIFVEFAKTRK 88
           L   +G+ ++GR IFV++AK ++
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQ 114

[Close]

BLAST of Pay0003247 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 70.9 bits (172), Expect = 6.4e-13
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 9   LFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQAM 68
           LF+S LS  TT E+L+  F+ FG +  AR+I D ++ R KGFGFVT+ +  +A+KA   M
Sbjct: 36  LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95

Query: 69  DGRIVDGRLIFVEFAKTRK 88
           + + +DG +IFV+ A+ R+
Sbjct: 96  NAKFLDGWVIFVDPARPRE 114

The following BLAST results are available for this feature:

BLAST of Pay0003247 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9DED4	2.1e-13	48.68	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 S...	[more]
Q9FX45	2.1e-13	43.75	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q28IQ9	4.8e-13	44.74	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
Q9FFZ6	1.1e-12	44.58	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
P60826	1.8e-12	47.37	Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 ...	[more]

BLAST of Pay0003247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5W5	8.4e-45	100.00	cold-inducible RNA-binding protein B OS=Cucumis melo OX=3656 GN=LOC103497209 PE=...	[more]
A0A6J1KF23	9.0e-39	88.30	cold-inducible RNA-binding protein B-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1GBJ9	9.0e-39	88.30	cold-inducible RNA-binding protein B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A0A0KQ26	7.1e-36	88.76	Cold-inducible RNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_5G593310 PE...	[more]
A0A6J1DM71	9.6e-33	80.00	small RNA-binding protein 11, chloroplastic OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Pay0003247 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457543.1	1.7e-44	100.00	PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo]	[more]
XP_004135289.2	3.1e-41	91.58	small RNA-binding protein 11, chloroplastic [Cucumis sativus] >KAE8648688.1 hypo...	[more]
XP_038895198.1	1.7e-39	89.36	small RNA-binding protein 11, chloroplastic-like [Benincasa hispida]	[more]
XP_022949004.1	1.9e-38	88.30	cold-inducible RNA-binding protein B-like [Cucurbita moschata] >XP_022997823.1 c...	[more]
KAG6607208.1	9.2e-38	87.23	Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sor...	[more]

BLAST of Pay0003247 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46020.1	2.4e-28	67.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59860.1	1.0e-18	61.64	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	1.5e-14	43.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	7.6e-14	44.58	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	6.4e-13	44.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..81 e-value: 4.2E-25 score: 99.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 e-value: 1.6E-22 score: 79.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..85 score: 19.689491
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..90 e-value: 9.6E-29 score: 102.3
None	No IPR available	PANTHER	PTHR48034:SF6	TRANSFORMER-2 SEX-DETERMINING PROTEIN	coord: 6..88
None	No IPR available	PANTHER	PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	coord: 6..88
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0003247.1	Pay0003247.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0017069	snRNA binding
molecular_function	GO:0003676	nucleic acid binding