Pay0003205 (gene) Melon (Payzawat) v1

Overview
NamePay0003205
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionhomeobox-leucine zipper protein ATHB-16
Locationchr10: 2911418 .. 2913302 (+)
RNA-Seq ExpressionPay0003205
SyntenyPay0003205
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCTCATCTTCTCTCTTCCTGTCTATGTCTATAAGCAAACCCAACTCACCAAACTTCTTCTTCAACTTCTACTTTTTTCTCCATCTTTGTCCTTTTAAGTTTCTGCATCAACTTATTTATAATTTGCATCAGTTCATGAATCCCACCAGCTCTCTCCATCCCTAAAACTTTCCACATTATCAAACCAATCCACACACACAATCCTACATTTTTCTCACTTCTTCAACCAAAAAAACAGCTAAAAAGCTTGGATTTTTCACCCTCGTTTGAGAATCCCACATGAACCCATTTCTCAATTATGGATTCTGAAACAACCCATTTTCTATCAAAACCTGAAGCTTCTTCTCTCCCCTGTTTCTGGGTCTCTGATTCTTGCTCTTCCATGAAAGGAGAAGGAACCCTTGGTGGGAAGAAGAGAAGGCTCTCAGTTGATCAAGTTCGGTTGCTTGAGAAGAATTTTAATGATGAGAATAAGCTTGAACATGAGAGGAAAGTTCAGATTGCTGAGGAGATAGGGTTGAGACCTCGTCAAGTTGCGGTTTGGTTTCAGAATCGAAGGGCTCGATCTAAGATGAAAAGAATTGAGAGTGATTATGAATGTTTGAATGCTGAATATGATAAGCTTAAGAGTGATTTTGATAGTCTTCTTAATATGAATCATGAACTCAAAGAAGAGGTATGGACTCTCTGTTTATGGCATTTAAAACTTCAGATCTGTTTAGATATTATCTTCATTGTCGTTTTGTTTCAGTCCCATTCTTATTTATTGTCTACTTTTTGTTCACTTTTTCATGTTCACTCATCTTCCTAAATACGACTTTAATAATTCAAAATCAATTTGGAGTCTAATTTTGTAGTTTTAAGCGTGATATTCATATCATCAACATGATTTTAAACTGATTAAAGATATATCAAGAGTGATTATGAACATGTCATTCCTGATCATGTACATCTAATACTTTAAGATTGTGTTTCACTGGAAAACAACTTTTATCAATAGTTATCAATGTTTTTATCAACTTACAGAAAATGTTTCATTTTGAAACCACTACGTACGGGATTTGAGAATGGTCGTGAACATGTCGCTCCCAAGCATGTACACCTATAAGTTCATTAAGTTGTGTTTCACTCGAAAAACAACTTTTATCAAAAGTTATTTCAAACTCATATTAAGGTATTCTCTACTAGTTCGATCAACTTACTCTTTTATCAAAAGTCTCTCAAACGCACTTTAAACGATTCCTTTTACTAAGTGCATCTACTTAGAGAAAATGTGTTCTATTTCATAACCACTTTTATCCAAAGTTATCTCAAACTTACTGTAAGCCGGTTTTCTACCAGGTTGATCAACTAAGAGCAAAATGGGCTGCTATGGAGAAGATGAAGAATCATTTTGAACCAGTTGGAGTTGAAGCCATGGTTTCATCAGTTACAGAACTTGAAAAAGCAAAAGCAAAGACAATGGGTGAAATTTTGTATAAAGTTCAAATGGGCTCATCAAGACATGAATTAGAAGGTAGCCTGAGTTCAAGCAAAAGTGATTGTTTTTATTCTGAAAGCCCCACAAGGGAAAACCAATCAAAGTCAGCCAATTTCTTGCAAGATGAAGAAGATGAATTAGGTTACTTAGGGAAACTAGAAGATGAACTTTCTGCCGATGAGCTCATGAATTCCTTTAACATTCTTAGTAGTGCAGTTGAAAATCAATCTTTCTGCTTTTGGTCTTAGTAGATATCGAGTTTAAATAACTATCAGTAAAATGTTTGAATCTACTGAAGATTAGAAATAAAAGAGTGGAAGTGATCATGAATATTACTTCTTCATTTACTATCATTTTGAGTAATTATCTAAACTATGTCTACTTCAAAACCAGCAAAAAGATC

mRNA sequence

CTCTCTCATCTTCTCTCTTCCTGTCTATGTCTATAAGCAAACCCAACTCACCAAACTTCTTCTTCAACTTCTACTTTTTTCTCCATCTTTGTCCTTTTAAGTTTCTGCATCAACTTATTTATAATTTGCATCAGTTCATGAATCCCACCAGCTCTCTCCATCCCTAAAACTTTCCACATTATCAAACCAATCCACACACACAATCCTACATTTTTCTCACTTCTTCAACCAAAAAAACAGCTAAAAAGCTTGGATTTTTCACCCTCGTTTGAGAATCCCACATGAACCCATTTCTCAATTATGGATTCTGAAACAACCCATTTTCTATCAAAACCTGAAGCTTCTTCTCTCCCCTGTTTCTGGGTCTCTGATTCTTGCTCTTCCATGAAAGGAGAAGGAACCCTTGGTGGGAAGAAGAGAAGGCTCTCAGTTGATCAAGTTCGGTTGCTTGAGAAGAATTTTAATGATGAGAATAAGCTTGAACATGAGAGGAAAGTTCAGATTGCTGAGGAGATAGGGTTGAGACCTCGTCAAGTTGCGGTTTGGTTTCAGAATCGAAGGGCTCGATCTAAGATGAAAAGAATTGAGAGTGATTATGAATGTTTGAATGCTGAATATGATAAGCTTAAGAGTGATTTTGATAGTCTTCTTAATATGAATCATGAACTCAAAGAAGAGGTTGATCAACTAAGAGCAAAATGGGCTGCTATGGAGAAGATGAAGAATCATTTTGAACCAGTTGGAGTTGAAGCCATGGTTTCATCAGTTACAGAACTTGAAAAAGCAAAAGCAAAGACAATGGGTGAAATTTTGTATAAAGTTCAAATGGGCTCATCAAGACATGAATTAGAAGGTAGCCTGAGTTCAAGCAAAAGTGATTGTTTTTATTCTGAAAGCCCCACAAGGGAAAACCAATCAAAGTCAGCCAATTTCTTGCAAGATGAAGAAGATGAATTAGGTTACTTAGGGAAACTAGAAGATGAACTTTCTGCCGATGAGCTCATGAATTCCTTTAACATTCTTAGTAGTGCAGTTGAAAATCAATCTTTCTGCTTTTGGTCTTAGTAGATATCGAGTTTAAATAACTATCAGTAAAATGTTTGAATCTACTGAAGATTAGAAATAAAAGAGTGGAAGTGATCATGAATATTACTTCTTCATTTACTATCATTTTGAGTAATTATCTAAACTATGTCTACTTCAAAACCAGCAAAAAGATC

Coding sequence (CDS)

ATGGATTCTGAAACAACCCATTTTCTATCAAAACCTGAAGCTTCTTCTCTCCCCTGTTTCTGGGTCTCTGATTCTTGCTCTTCCATGAAAGGAGAAGGAACCCTTGGTGGGAAGAAGAGAAGGCTCTCAGTTGATCAAGTTCGGTTGCTTGAGAAGAATTTTAATGATGAGAATAAGCTTGAACATGAGAGGAAAGTTCAGATTGCTGAGGAGATAGGGTTGAGACCTCGTCAAGTTGCGGTTTGGTTTCAGAATCGAAGGGCTCGATCTAAGATGAAAAGAATTGAGAGTGATTATGAATGTTTGAATGCTGAATATGATAAGCTTAAGAGTGATTTTGATAGTCTTCTTAATATGAATCATGAACTCAAAGAAGAGGTTGATCAACTAAGAGCAAAATGGGCTGCTATGGAGAAGATGAAGAATCATTTTGAACCAGTTGGAGTTGAAGCCATGGTTTCATCAGTTACAGAACTTGAAAAAGCAAAAGCAAAGACAATGGGTGAAATTTTGTATAAAGTTCAAATGGGCTCATCAAGACATGAATTAGAAGGTAGCCTGAGTTCAAGCAAAAGTGATTGTTTTTATTCTGAAAGCCCCACAAGGGAAAACCAATCAAAGTCAGCCAATTTCTTGCAAGATGAAGAAGATGAATTAGGTTACTTAGGGAAACTAGAAGATGAACTTTCTGCCGATGAGCTCATGAATTCCTTTAACATTCTTAGTAGTGCAGTTGAAAATCAATCTTTCTGCTTTTGGTCTTAG

Protein sequence

MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEGTLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKSDFDSLLNMNHELKEEVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEILYKVQMGSSRHELEGSLSSSKSDCFYSESPTRENQSKSANFLQDEEDELGYLGKLEDELSADELMNSFNILSSAVENQSFCFWS
Homology
BLAST of Pay0003205 vs. ExPASy Swiss-Prot
Match: P46668 (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana OX=3702 GN=ATHB-6 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.7e-26
Identity = 60/104 (57.69%), Postives = 78/104 (75.00%), Query Frame = 0

Query: 30  KGEGTLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRAR 89
           +G   L  KKRRLS++QV+ LEKNF  ENKLE ERKV++A+E+GL+PRQVAVWFQNRRAR
Sbjct: 54  RGHVGLSEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 113

Query: 90  SKMKRIESDYECLNAEYDKLKSDFDSLLNMNHELKEEVDQLRAK 134
            K K++E DY  L  +YD L+ +FDSL   N  L +E+ +L+ K
Sbjct: 114 WKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTK 157

BLAST of Pay0003205 vs. ExPASy Swiss-Prot
Match: Q940J1 (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana OX=3702 GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-25
Identity = 66/133 (49.62%), Postives = 87/133 (65.41%), Query Frame = 0

Query: 35  LGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKR 94
           L  KKRRL VDQV+ LEKNF  ENKLE ERK ++A+E+GL+PRQVAVWFQNRRAR K K+
Sbjct: 56  LSEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQ 115

Query: 95  IESDYECLNAEYDKLKSDFDSLLNMNHELKEEVDQLRAKWAAMEKMKNHFEPVGVEAMVS 154
           +E DY  L  +YD L+ +FDSL   N  L +E+ +++AK    E   N+      +A+  
Sbjct: 116 LEKDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAKVNGEEDNNNN------KAITE 175

Query: 155 SVTELEKAKAKTM 168
            V E E  K  ++
Sbjct: 176 GVKEEEVHKTDSI 182

BLAST of Pay0003205 vs. ExPASy Swiss-Prot
Match: Q02283 (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana OX=3702 GN=HAT5 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.2e-24
Identity = 60/111 (54.05%), Postives = 81/111 (72.97%), Query Frame = 0

Query: 38  KKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIES 97
           KKRRL+ +QV LLEK+F  ENKLE ERK Q+A+++GL+PRQVAVWFQNRRAR K K++E 
Sbjct: 68  KKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLER 127

Query: 98  DYECLNAEYDKLKSDFDSLLNMNHELKEEVDQLRAKWAAMEKMKNHFEPVG 149
           DY+ L + YD+L S++DS++  N +L+ EV  L  K    ++  N  EP G
Sbjct: 128 DYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKLQGKQETAN--EPPG 176

BLAST of Pay0003205 vs. ExPASy Swiss-Prot
Match: A2XD08 (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. indica OX=39946 GN=HOX21 PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 4.2e-24
Identity = 58/103 (56.31%), Postives = 78/103 (75.73%), Query Frame = 0

Query: 36  GGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRI 95
           G KKRRL+V+QVR LEKNF   NKLE ERK+Q+A  +GL+PRQVA+WFQNRRAR K K++
Sbjct: 122 GEKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 181

Query: 96  ESDYECLNAEYDKLKSDFDSLLNMNHELKEEVDQLRAKWAAME 139
           E DY+ L  + D +K++ D+LLN N +L+ E+  L+ + AA E
Sbjct: 182 EKDYDALKRQLDAVKAENDALLNHNKKLQAEIVALKGREAASE 224

BLAST of Pay0003205 vs. ExPASy Swiss-Prot
Match: Q8S7W9 (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX21 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.2e-24
Identity = 58/103 (56.31%), Postives = 78/103 (75.73%), Query Frame = 0

Query: 36  GGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRI 95
           G KKRRL+V+QVR LEKNF   NKLE ERK+Q+A  +GL+PRQVA+WFQNRRAR K K++
Sbjct: 128 GEKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 187

Query: 96  ESDYECLNAEYDKLKSDFDSLLNMNHELKEEVDQLRAKWAAME 139
           E DY+ L  + D +K++ D+LLN N +L+ E+  L+ + AA E
Sbjct: 188 EKDYDALKRQLDAVKAENDALLNHNKKLQAEIVALKGREAASE 230

BLAST of Pay0003205 vs. ExPASy TrEMBL
Match: A0A1S3BER7 (homeobox-leucine zipper protein ATHB-16 OS=Cucumis melo OX=3656 GN=LOC103489083 PE=4 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.4e-134
Identity = 251/254 (98.82%), Postives = 252/254 (99.21%), Query Frame = 0

Query: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEGTLGGKKRRLSVDQVRLLEKNFNDENKL 60
           MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEGTLGGKKRRLSVDQVRLLEKNFNDENKL
Sbjct: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEGTLGGKKRRLSVDQVRLLEKNFNDENKL 60

Query: 61  EHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKSDFDSLLNMN 120
           EHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKSDFDSLLNMN
Sbjct: 61  EHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKSDFDSLLNMN 120

Query: 121 HELKEEVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEILYKVQMGSSR 180
           HELK EVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEILY+VQMGSSR
Sbjct: 121 HELKAEVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEILYEVQMGSSR 180

Query: 181 HELEGSLSSSKSDCFYSESPTRENQSKSANFLQDEEDELGYLGKLEDELSADELMNSFNI 240
           HELEGSLSSSKSDCFYSESPTRENQSKSANFLQDEEDELGYL KLEDELSADELMNSFNI
Sbjct: 181 HELEGSLSSSKSDCFYSESPTRENQSKSANFLQDEEDELGYLEKLEDELSADELMNSFNI 240

Query: 241 LSSAVENQSFCFWS 255
           LSSAVENQSFCFWS
Sbjct: 241 LSSAVENQSFCFWS 254

BLAST of Pay0003205 vs. ExPASy TrEMBL
Match: A0A0A0KVU6 (Homeobox protein OS=Cucumis sativus OX=3659 GN=Csa_5G604260 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 2.6e-125
Identity = 241/255 (94.51%), Postives = 246/255 (96.47%), Query Frame = 0

Query: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEG-TLGGKKRRLSVDQVRLLEKNFNDENK 60
           MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEG TLGGKKRRLSVDQVRLLEKNFNDENK
Sbjct: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEGTTLGGKKRRLSVDQVRLLEKNFNDENK 60

Query: 61  LEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKSDFDSLLNM 120
           LEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECL+AEYDKLKSDFDSLLNM
Sbjct: 61  LEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLSAEYDKLKSDFDSLLNM 120

Query: 121 NHELKEEVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEILYKVQMGSS 180
           NHELK EVDQLR  WAA+EKMKNHFEPVGVEAM SSVT+LEKA AKTMGEILYKVQMGSS
Sbjct: 121 NHELKAEVDQLRTTWAAVEKMKNHFEPVGVEAMDSSVTKLEKANAKTMGEILYKVQMGSS 180

Query: 181 RHELEGSLSSSKSDCFYSESPTRENQSKSANFLQDEEDELGYLGKLEDELSADELMNSFN 240
           RHE EGSLSSSKSD FYSESPTR+NQSKSANFLQDEEDELG LGKLEDELSA+ELMNSFN
Sbjct: 181 RHE-EGSLSSSKSDGFYSESPTRDNQSKSANFLQDEEDELGCLGKLEDELSANELMNSFN 240

Query: 241 ILSSAVENQSFCFWS 255
           ILSSAVENQSFCFWS
Sbjct: 241 ILSSAVENQSFCFWS 254

BLAST of Pay0003205 vs. ExPASy TrEMBL
Match: A0A5D3CVI2 (Homeobox-leucine zipper protein ATHB-16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00270 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 5.8e-117
Identity = 223/226 (98.67%), Postives = 224/226 (99.12%), Query Frame = 0

Query: 29  MKGEGTLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRA 88
           MKGEGTLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRA
Sbjct: 1   MKGEGTLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRA 60

Query: 89  RSKMKRIESDYECLNAEYDKLKSDFDSLLNMNHELKEEVDQLRAKWAAMEKMKNHFEPVG 148
           RSKMKRIESDYECLNAEYDKLKSDFDSLLNMNHELK EVDQLRAKWAAMEKMKNHFEPVG
Sbjct: 61  RSKMKRIESDYECLNAEYDKLKSDFDSLLNMNHELKAEVDQLRAKWAAMEKMKNHFEPVG 120

Query: 149 VEAMVSSVTELEKAKAKTMGEILYKVQMGSSRHELEGSLSSSKSDCFYSESPTRENQSKS 208
           VEAMVSSVTELEKAKAKTMGEILY+VQMGSSRHELEGSLSSSKSDCFYSESPTRENQSKS
Sbjct: 121 VEAMVSSVTELEKAKAKTMGEILYEVQMGSSRHELEGSLSSSKSDCFYSESPTRENQSKS 180

Query: 209 ANFLQDEEDELGYLGKLEDELSADELMNSFNILSSAVENQSFCFWS 255
           ANFLQDEEDELGYL KLEDELSADELMNSFNILSSAVENQSFCFWS
Sbjct: 181 ANFLQDEEDELGYLEKLEDELSADELMNSFNILSSAVENQSFCFWS 226

BLAST of Pay0003205 vs. ExPASy TrEMBL
Match: A0A6J1GYD2 (homeobox-leucine zipper protein ATHB-16-like OS=Cucurbita moschata OX=3662 GN=LOC111458422 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 3.1e-86
Identity = 183/265 (69.06%), Postives = 204/265 (76.98%), Query Frame = 0

Query: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGE---------GTLGGKKRRLSVDQVRLLE 60
           MDS+TTH L  PE  SLP  W+SDSCSSM+GE            GGKKRRL++DQVR+LE
Sbjct: 1   MDSDTTHCLPLPE--SLPSLWISDSCSSMEGEFSQPQAKADRNRGGKKRRLTLDQVRMLE 60

Query: 61  KNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKS 120
           + FN ENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSK K+IE DYE LNAEYDKLK+
Sbjct: 61  RTFNAENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKTKKIEIDYESLNAEYDKLKN 120

Query: 121 DFDSLLNMNHELKEEVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEIL 180
           DFDSLL +NHELK EV+QLR KWAA EKM N +EPVG                      L
Sbjct: 121 DFDSLLKVNHELKAEVNQLRDKWAATEKMNNPYEPVGA---------------------L 180

Query: 181 YKVQMGSSRHELEGSLSSSKSDCFYSESPTRENQSKSANFLQDEE--DELGYLGKLEDEL 240
           YKV+MGSSR E +GS SSSKSD FY+ESPTRENQS+S NFL+DEE  DELGYLG LEDEL
Sbjct: 181 YKVEMGSSRQE-QGSRSSSKSDVFYAESPTRENQSRSGNFLRDEEEDDELGYLGILEDEL 240

Query: 241 SADELMNSFNILSSAVENQSFCFWS 255
           SADELM+SFN++SSA E+QSFCFWS
Sbjct: 241 SADELMDSFNVMSSAAEDQSFCFWS 241

BLAST of Pay0003205 vs. ExPASy TrEMBL
Match: A0A6J1KEP6 (homeobox-leucine zipper protein ATHB-7-like OS=Cucurbita maxima OX=3661 GN=LOC111494298 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 9.0e-86
Identity = 183/265 (69.06%), Postives = 202/265 (76.23%), Query Frame = 0

Query: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGE---------GTLGGKKRRLSVDQVRLLE 60
           MDSETTHFL  PE  SLP  W+SDSCSSM+GE            GGKKRRL++DQVR+LE
Sbjct: 57  MDSETTHFLPLPE--SLPSLWISDSCSSMEGEFSQPQAKADRNRGGKKRRLTLDQVRMLE 116

Query: 61  KNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKS 120
           + FN E+KLEHERKVQIAEEIGLRPRQVAVWFQNRRARSK K+IE DYE LNAEYDKLK+
Sbjct: 117 RTFNAESKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKTKKIEIDYESLNAEYDKLKN 176

Query: 121 DFDSLLNMNHELKEEVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEIL 180
           DFDSLL +NHELK EVDQLR KWAA EK  N +EPVG                      L
Sbjct: 177 DFDSLLKVNHELKAEVDQLRDKWAATEKTNNPYEPVGA---------------------L 236

Query: 181 YKVQMGSSRHELEGSLSSSKSDCFYSESPTRENQSKSANFLQDEE--DELGYLGKLEDEL 240
           YKV+MGSSR E +GS SSSKSD FY+ESPTRENQS+S NFL+DEE  DELGY G LEDEL
Sbjct: 237 YKVEMGSSRQE-QGSRSSSKSDVFYAESPTRENQSRSGNFLRDEEEDDELGYWGILEDEL 296

Query: 241 SADELMNSFNILSSAVENQSFCFWS 255
           SADELM+SFN++SSA E QSFCFWS
Sbjct: 297 SADELMDSFNVMSSAAEYQSFCFWS 297

BLAST of Pay0003205 vs. NCBI nr
Match: XP_008446309.1 (PREDICTED: homeobox-leucine zipper protein ATHB-16 [Cucumis melo])

HSP 1 Score: 488.8 bits (1257), Expect = 2.8e-134
Identity = 251/254 (98.82%), Postives = 252/254 (99.21%), Query Frame = 0

Query: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEGTLGGKKRRLSVDQVRLLEKNFNDENKL 60
           MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEGTLGGKKRRLSVDQVRLLEKNFNDENKL
Sbjct: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEGTLGGKKRRLSVDQVRLLEKNFNDENKL 60

Query: 61  EHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKSDFDSLLNMN 120
           EHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKSDFDSLLNMN
Sbjct: 61  EHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKSDFDSLLNMN 120

Query: 121 HELKEEVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEILYKVQMGSSR 180
           HELK EVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEILY+VQMGSSR
Sbjct: 121 HELKAEVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEILYEVQMGSSR 180

Query: 181 HELEGSLSSSKSDCFYSESPTRENQSKSANFLQDEEDELGYLGKLEDELSADELMNSFNI 240
           HELEGSLSSSKSDCFYSESPTRENQSKSANFLQDEEDELGYL KLEDELSADELMNSFNI
Sbjct: 181 HELEGSLSSSKSDCFYSESPTRENQSKSANFLQDEEDELGYLEKLEDELSADELMNSFNI 240

Query: 241 LSSAVENQSFCFWS 255
           LSSAVENQSFCFWS
Sbjct: 241 LSSAVENQSFCFWS 254

BLAST of Pay0003205 vs. NCBI nr
Match: XP_004135200.1 (homeobox-leucine zipper protein HAT5 [Cucumis sativus] >KGN51881.1 hypothetical protein Csa_008673 [Cucumis sativus])

HSP 1 Score: 458.0 bits (1177), Expect = 5.3e-125
Identity = 241/255 (94.51%), Postives = 246/255 (96.47%), Query Frame = 0

Query: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEG-TLGGKKRRLSVDQVRLLEKNFNDENK 60
           MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEG TLGGKKRRLSVDQVRLLEKNFNDENK
Sbjct: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEGTTLGGKKRRLSVDQVRLLEKNFNDENK 60

Query: 61  LEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKSDFDSLLNM 120
           LEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECL+AEYDKLKSDFDSLLNM
Sbjct: 61  LEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLSAEYDKLKSDFDSLLNM 120

Query: 121 NHELKEEVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEILYKVQMGSS 180
           NHELK EVDQLR  WAA+EKMKNHFEPVGVEAM SSVT+LEKA AKTMGEILYKVQMGSS
Sbjct: 121 NHELKAEVDQLRTTWAAVEKMKNHFEPVGVEAMDSSVTKLEKANAKTMGEILYKVQMGSS 180

Query: 181 RHELEGSLSSSKSDCFYSESPTRENQSKSANFLQDEEDELGYLGKLEDELSADELMNSFN 240
           RHE EGSLSSSKSD FYSESPTR+NQSKSANFLQDEEDELG LGKLEDELSA+ELMNSFN
Sbjct: 181 RHE-EGSLSSSKSDGFYSESPTRDNQSKSANFLQDEEDELGCLGKLEDELSANELMNSFN 240

Query: 241 ILSSAVENQSFCFWS 255
           ILSSAVENQSFCFWS
Sbjct: 241 ILSSAVENQSFCFWS 254

BLAST of Pay0003205 vs. NCBI nr
Match: KAA0034384.1 (homeobox-leucine zipper protein ATHB-16 [Cucumis melo var. makuwa] >TYK15535.1 homeobox-leucine zipper protein ATHB-16 [Cucumis melo var. makuwa])

HSP 1 Score: 430.3 bits (1105), Expect = 1.2e-116
Identity = 223/226 (98.67%), Postives = 224/226 (99.12%), Query Frame = 0

Query: 29  MKGEGTLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRA 88
           MKGEGTLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRA
Sbjct: 1   MKGEGTLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRA 60

Query: 89  RSKMKRIESDYECLNAEYDKLKSDFDSLLNMNHELKEEVDQLRAKWAAMEKMKNHFEPVG 148
           RSKMKRIESDYECLNAEYDKLKSDFDSLLNMNHELK EVDQLRAKWAAMEKMKNHFEPVG
Sbjct: 61  RSKMKRIESDYECLNAEYDKLKSDFDSLLNMNHELKAEVDQLRAKWAAMEKMKNHFEPVG 120

Query: 149 VEAMVSSVTELEKAKAKTMGEILYKVQMGSSRHELEGSLSSSKSDCFYSESPTRENQSKS 208
           VEAMVSSVTELEKAKAKTMGEILY+VQMGSSRHELEGSLSSSKSDCFYSESPTRENQSKS
Sbjct: 121 VEAMVSSVTELEKAKAKTMGEILYEVQMGSSRHELEGSLSSSKSDCFYSESPTRENQSKS 180

Query: 209 ANFLQDEEDELGYLGKLEDELSADELMNSFNILSSAVENQSFCFWS 255
           ANFLQDEEDELGYL KLEDELSADELMNSFNILSSAVENQSFCFWS
Sbjct: 181 ANFLQDEEDELGYLEKLEDELSADELMNSFNILSSAVENQSFCFWS 226

BLAST of Pay0003205 vs. NCBI nr
Match: XP_038892732.1 (homeobox-leucine zipper protein ATHB-54 [Benincasa hispida])

HSP 1 Score: 402.1 bits (1032), Expect = 3.5e-108
Identity = 216/254 (85.04%), Postives = 225/254 (88.58%), Query Frame = 0

Query: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEGTLGGKKRRLSVDQVRLLEKNFNDENKL 60
           MDSETTHFL K EASSLPCF VSD CSSMKGEG  GGKKRRL+VDQVRLLEKNFNDE KL
Sbjct: 1   MDSETTHFLPKAEASSLPCFLVSDFCSSMKGEGNQGGKKRRLTVDQVRLLEKNFNDEIKL 60

Query: 61  EHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKSDFDSLLNMN 120
           EHERKVQIAEEIGLRPRQVAVWFQNRRARSK KRIESDYE L+ EYDKLK+DFDSLL +N
Sbjct: 61  EHERKVQIAEEIGLRPRQVAVWFQNRRARSKTKRIESDYESLSVEYDKLKNDFDSLLKVN 120

Query: 121 HELKEEVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEILYKVQMGSSR 180
            ELK EVDQLR KWAA EK KN FEPV VEAM SSVTEL KA  KTM EILYKVQ+GS R
Sbjct: 121 QELKAEVDQLRDKWAASEKKKNSFEPVEVEAMDSSVTELGKANTKTMAEILYKVQLGSYR 180

Query: 181 HELEGSLSSSKSDCFYSESPTRENQSKSANFLQDEEDELGYLGKLEDELSADELMNSFNI 240
            E EGSLSSSKSD FYSESPTRENQSKS NFLQ+EEDELGYLGKLEDELSA+ELM+SFNI
Sbjct: 181 QE-EGSLSSSKSDGFYSESPTRENQSKSGNFLQEEEDELGYLGKLEDELSANELMDSFNI 240

Query: 241 LSSAVENQSFCFWS 255
           LS+AVENQS CFWS
Sbjct: 241 LSNAVENQSLCFWS 253

BLAST of Pay0003205 vs. NCBI nr
Match: XP_023537958.1 (homeobox-leucine zipper protein HOX20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.0 bits (850), Expect = 4.4e-87
Identity = 185/265 (69.81%), Postives = 205/265 (77.36%), Query Frame = 0

Query: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGE---------GTLGGKKRRLSVDQVRLLE 60
           MDS+TTHFL  PE  SLP  W+SDSCSSM+GE            GGKKRRL++DQVR+LE
Sbjct: 1   MDSKTTHFLPLPE--SLPSLWISDSCSSMEGEFSQPQVKADRNRGGKKRRLTLDQVRMLE 60

Query: 61  KNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKS 120
           + FN ENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSK K+IE DYE LNAEYDKLK+
Sbjct: 61  RTFNAENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKTKKIEIDYESLNAEYDKLKN 120

Query: 121 DFDSLLNMNHELKEEVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEIL 180
           DFDSLL +NHELK EVDQLR KWAA EKMKN +EPVG                       
Sbjct: 121 DFDSLLKVNHELKAEVDQLRDKWAATEKMKNPYEPVG---------------------DF 180

Query: 181 YKVQMGSSRHELEGSLSSSKSDCFYSESPTRENQSKSANFLQDEE--DELGYLGKLEDEL 240
           YKV+MGSSR E +GS SSSKSD FY+ESPTRENQS+S NFL+DEE  DELGYLG LEDEL
Sbjct: 181 YKVEMGSSRQE-QGSRSSSKSDVFYAESPTRENQSRSGNFLRDEEEDDELGYLGILEDEL 240

Query: 241 SADELMNSFNILSSAVENQSFCFWS 255
           SADELM+SFN++SSA E+QSFCFWS
Sbjct: 241 SADELMDSFNVMSSAAEDQSFCFWS 241

BLAST of Pay0003205 vs. TAIR 10
Match: AT2G22430.1 (homeobox protein 6 )

HSP 1 Score: 119.0 bits (297), Expect = 5.5e-27
Identity = 60/104 (57.69%), Postives = 78/104 (75.00%), Query Frame = 0

Query: 30  KGEGTLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRAR 89
           +G   L  KKRRLS++QV+ LEKNF  ENKLE ERKV++A+E+GL+PRQVAVWFQNRRAR
Sbjct: 54  RGHVGLSEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 113

Query: 90  SKMKRIESDYECLNAEYDKLKSDFDSLLNMNHELKEEVDQLRAK 134
            K K++E DY  L  +YD L+ +FDSL   N  L +E+ +L+ K
Sbjct: 114 WKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTK 157

BLAST of Pay0003205 vs. TAIR 10
Match: AT4G40060.1 (homeobox protein 16 )

HSP 1 Score: 117.1 bits (292), Expect = 2.1e-26
Identity = 66/133 (49.62%), Postives = 87/133 (65.41%), Query Frame = 0

Query: 35  LGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKR 94
           L  KKRRL VDQV+ LEKNF  ENKLE ERK ++A+E+GL+PRQVAVWFQNRRAR K K+
Sbjct: 56  LSEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQ 115

Query: 95  IESDYECLNAEYDKLKSDFDSLLNMNHELKEEVDQLRAKWAAMEKMKNHFEPVGVEAMVS 154
           +E DY  L  +YD L+ +FDSL   N  L +E+ +++AK    E   N+      +A+  
Sbjct: 116 LEKDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAKVNGEEDNNNN------KAITE 175

Query: 155 SVTELEKAKAKTM 168
            V E E  K  ++
Sbjct: 176 GVKEEEVHKTDSI 182

BLAST of Pay0003205 vs. TAIR 10
Match: AT3G01470.1 (homeobox 1 )

HSP 1 Score: 113.6 bits (283), Expect = 2.3e-25
Identity = 60/111 (54.05%), Postives = 81/111 (72.97%), Query Frame = 0

Query: 38  KKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIES 97
           KKRRL+ +QV LLEK+F  ENKLE ERK Q+A+++GL+PRQVAVWFQNRRAR K K++E 
Sbjct: 68  KKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLER 127

Query: 98  DYECLNAEYDKLKSDFDSLLNMNHELKEEVDQLRAKWAAMEKMKNHFEPVG 149
           DY+ L + YD+L S++DS++  N +L+ EV  L  K    ++  N  EP G
Sbjct: 128 DYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKLQGKQETAN--EPPG 176

BLAST of Pay0003205 vs. TAIR 10
Match: AT5G65310.1 (homeobox protein 5 )

HSP 1 Score: 109.4 bits (272), Expect = 4.3e-24
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 0

Query: 34  TLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMK 93
           T   KKRRL V+QV+ LEKNF  +NKLE ERKV++A+E+GL+PRQVA+WFQNRRAR K K
Sbjct: 68  TAAEKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTK 127

Query: 94  RIESDYECLNAEYDKLKSDFDSLLNMNHELKEEVDQLRAK 134
           ++E DY  L + +D LK + DSL   N  L  ++ +L+AK
Sbjct: 128 QLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAK 167

BLAST of Pay0003205 vs. TAIR 10
Match: AT5G65310.2 (homeobox protein 5 )

HSP 1 Score: 109.4 bits (272), Expect = 4.3e-24
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 0

Query: 34  TLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMK 93
           T   KKRRL V+QV+ LEKNF  +NKLE ERKV++A+E+GL+PRQVA+WFQNRRAR K K
Sbjct: 50  TAAEKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTK 109

Query: 94  RIESDYECLNAEYDKLKSDFDSLLNMNHELKEEVDQLRAK 134
           ++E DY  L + +D LK + DSL   N  L  ++ +L+AK
Sbjct: 110 QLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAK 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P466687.7e-2657.69Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana OX=3702 GN=ATHB-6... [more]
Q940J12.9e-2549.62Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana OX=3702 GN=ATHB-... [more]
Q022833.2e-2454.05Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana OX=3702 GN=HAT5 PE=... [more]
A2XD084.2e-2456.31Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. indica OX=39946 GN=... [more]
Q8S7W94.2e-2456.31Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
Match NameE-valueIdentityDescription
A0A1S3BER71.4e-13498.82homeobox-leucine zipper protein ATHB-16 OS=Cucumis melo OX=3656 GN=LOC103489083 ... [more]
A0A0A0KVU62.6e-12594.51Homeobox protein OS=Cucumis sativus OX=3659 GN=Csa_5G604260 PE=4 SV=1[more]
A0A5D3CVI25.8e-11798.67Homeobox-leucine zipper protein ATHB-16 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A6J1GYD23.1e-8669.06homeobox-leucine zipper protein ATHB-16-like OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1KEP69.0e-8669.06homeobox-leucine zipper protein ATHB-7-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
Match NameE-valueIdentityDescription
XP_008446309.12.8e-13498.82PREDICTED: homeobox-leucine zipper protein ATHB-16 [Cucumis melo][more]
XP_004135200.15.3e-12594.51homeobox-leucine zipper protein HAT5 [Cucumis sativus] >KGN51881.1 hypothetical ... [more]
KAA0034384.11.2e-11698.67homeobox-leucine zipper protein ATHB-16 [Cucumis melo var. makuwa] >TYK15535.1 h... [more]
XP_038892732.13.5e-10885.04homeobox-leucine zipper protein ATHB-54 [Benincasa hispida][more]
XP_023537958.14.4e-8769.81homeobox-leucine zipper protein HOX20-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT2G22430.15.5e-2757.69homeobox protein 6 [more]
AT4G40060.12.1e-2649.62homeobox protein 16 [more]
AT3G01470.12.3e-2554.05homeobox 1 [more]
AT5G65310.14.3e-2456.00homeobox protein 5 [more]
AT5G65310.24.3e-2456.00homeobox protein 5 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 85..140
NoneNo IPR availableGENE3D1.10.10.60coord: 33..98
e-value: 3.5E-17
score: 63.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..209
NoneNo IPR availablePANTHERPTHR24326HOMEOBOX-LEUCINE ZIPPER PROTEINcoord: 37..225
NoneNo IPR availablePANTHERPTHR24326:SF575HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5-LIKEcoord: 37..225
IPR000047Helix-turn-helix motifPRINTSPR00031HTHREPRESSRcoord: 73..89
score: 58.88
coord: 64..73
score: 31.26
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 36..97
e-value: 7.4E-15
score: 65.4
IPR001356Homeobox domainPFAMPF00046Homeodomaincoord: 38..91
e-value: 1.9E-15
score: 56.5
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 38..93
score: 16.114748
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 38..91
e-value: 2.04425E-14
score: 64.1868
IPR003106Leucine zipper, homeobox-associatedPFAMPF02183HALZcoord: 93..133
e-value: 6.4E-12
score: 45.5
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 68..91
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 17..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0003205.1Pay0003205.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006357 regulation of transcription by RNA polymerase II
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003677 DNA binding