Pay0003195 (gene) Melon (Payzawat) v1

Overview


Name	Pay0003195
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	U1 small nuclear ribonucleoprotein C
Location	chr01: 31125617 .. 31128486 (+)
RNA-Seq Expression	Pay0003195
Synteny	Pay0003195

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGGTTCGTTCTTTCATATCCTTTTTCTTCCAGCCCTGATTACTTTATTATTCAATCAAATTTAAACATCTCTCCTTTTCTCTCTCCATAGTTAGTGATGTGATCTTGTTGTGAATATGCAGGTATTATTGTGACTATTGCGATACGTATCTGACCCATGATTCTGTAAGTCATCCTCTTTTTATGTTCAGATGATAATGCTATTTCCATTTCGTTTGACCATTGCCCACCTTGCTCGCCATTTTTTTTTTCTGTTTATTTTCGTTTTGGGATTTTATTCGTTGATGCTGTAGTTCCTCGATAGGTAATGTTTTTGGGTTGATGATTCTTGGTTTTGGATGCACATATCAGTTGTTCGAAGAAATTGTAGGAAATTTGGATTCATATGACCGTGGTTGCTGTTGGGATTGGATCGAATGATGAATCAAATAGACTGTTCGTTGTTTTTTTCTTCTCATATATATATTATGATGTTTACATAAATGTGTTTTAAGAGAAGCTAGAACTTATGTTAGTAATTGAAAAGGTACAATGTTAATGATGAGAAGACTTGCCATTAAGACTTAAATCTAAAGAAACAAGTAATTGTGAAAAGGTTTGGAGAGAGCACTCCAAGAAGCTAACTTTTGAGCGTTTGATATATTTTAGACCAAACAACTTGGAAGCCCACAAAACCACCGTTGGTTGGCCTAGTGAATTGAGGTTGAGGTCAAGGAAGAAAGTGAGTGTAGAGGCTATTGGTTCAAACTATTGACTACATACATAAGATTTAAAATTCTATGACTTTCCTTCGTAACTAGATGTTGTAGGGTGAGGTGGTTGTGGCTTCATGTTAGTCGAGGTGTGTGCAAAACCGTACTCTACACTTGATATCCAAAAAAAGAGAAGAAACACTAAACCATGGTTACTATGTATAGTTCTTGATTTCAAGCGGGATGTGTCAAACCTTTGGTTTCCTTGAAACTAACATTAGTCTGTACAATCTTTAATGACTTTTTTCAGTTATACTTGATTCTTGTGTTCTAGACGCGATAATATTTAGCTCCTTGGCATATTTTGGGCTCCCCCCCCCACCCCCTTTAAAAAATGTTGTTGGATAGAGTATTGCTCTGGGGACAGGCTTCAGAATTTTTTCATTTATATTGAGTCATTGGTTGTTTAGAATTGCTTATATTTAGTTTATCTTTGATGTCTCAGCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGTATCTTAATATTTCCCACGTCTCTGTTTAGCGTATAATTCCCTATTCCGTGGAGGTTGAGCTCATCGAGCCAGTTTAGAACTTAATATCGTAGTTTTATGTTTTAAAGAGTTTCAGATTAAAAAGAACCTGATTGTGGTTTTGTTGGTTATAATTTTAGAAACACTTATAAAGGGGAAAAGTTAACTGTTAGAGGTAAGATTTTATTGTTTATAGAGGTTCTGTTAAGGTTAGTGAATTGTAATTGTAACTTTCATATTTTTAAATAAAAGGACATAATTTAGAGAACTGAGGTAATATTAAAAATATCTTTTCACACATTCATCCAATAAGAACTTTATTTTTTTTTTTCAAGGAAAAAGACATTTTAGTTTCTAAAAGAACAAATGATCAACGAATTCTTAGTTTTTTTATTCATGGATGCACTCCAGGCAAACGTGCGATCATACTATCAGCAGTTCGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAGCATCTTGGTCAAGCCGCAGCATTCCAGCAGGTTGGTGCAGCTTTTAATCAACATTTACTCGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATACCAGGAGCTGCTCCGGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAATTCCTGGTGCTCCAGGTAATATTCACAGATTTGATATTGTTGGAGATTTAACAATTTCTTTTAATGCATATCCCTTTGACTTTGTTGATGTCATTTCGCAATTTGCATTTTGAACTACTATAACAACATTGTTATGTTTTTCGACTCAGTAAAAAAAAAAACCTTAAAAACTTGAAACTTAAAATAGTCAAAGTAATAATATATCATCTTGAATAGTGGAGATACTAGATATAATAATTACTGCCAAAGTAGAATCTGGCACCTATCTGTCTAGTTAAAATTATTTCTATTGTTGCTAGAATGATGTTTAGTCCTTTTTTTCAACAAACAAAAGACCAAACTTATTTAGAACGTAAAATGGAAGATAATTAGAGCGATGCAGATTTTCCCAGTCACATTCTGATGAAGTTTCTCTTTTCCTTGCTGGAAAAAAGGAATTATCATTTGAATAGAGGAAATCAGTTTAACCTCGTTGCTACTACTATCTCTTGAAGCTCAACTAGTATACTTCAGACTGACTCATGTCAGTTAGTGACATTTTTGTTGATTTCGGCCCGTGCTTCTTTTCATTACTGAATGTCAGTATTTCACCTATGTATCTAGATGTCTGAATTCCTCTTCTTTGTCATTGTAGGGTATCTACCAACTCCCACAATGCCACCTATGATGGCCCCGCCTGGAGCTCCCATCCCTGGCCAAGTGAATATTCCTTCCAGGCCGCCTCCTCCAGCGCCAATTCCAGGGAGTGCACCTCAACCTTCTTCAACCAATGGCGCACCATTGGCTGCACCATCGACATACCAAGCAAACCCAGCCGCACAGGAAGTTGGAGGGTTATCTTTTTTTATTCTTTTATTTTATTTACTTTATTTTATAAAAAAAAATATTATTTTATTTATTTTTTTTTTTTATGCATAGTTCACCTCCATGGCTCAACCTTCCTCTGAGTCTAACCATTAG

mRNA sequence

ATGCCTCGGTATTATTGTGACTATTGCGATACGTATCTGACCCATGATTCTCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGCAAACGTGCGATCATACTATCAGCAGTTCGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAGCATCTTGGTCAAGCCGCAGCATTCCAGCAGGTTGGTGCAGCTTTTAATCAACATTTACTCGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATACCAGGAGCTGCTCCGGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAATTCCTGGTGCTCCAGGGTATCTACCAACTCCCACAATGCCACCTATGATGGCCCCGCCTGGAGCTCCCATCCCTGGCCAAGTGAATATTCCTTCCAGGCCGCCTCCTCCAGCGCCAATTCCAGGGAGTGCACCTCAACCTTCTTCAACCAATGGCGCACCATTGGCTGCACCATCGACATACCAAGCAAACCCAGCCGCACAGGAATTCACCTCCATGGCTCAACCTTCCTCTGAGTCTAACCATTAG

Coding sequence (CDS)

ATGCCTCGGTATTATTGTGACTATTGCGATACGTATCTGACCCATGATTCTCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGCAAACGTGCGATCATACTATCAGCAGTTCGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAGCATCTTGGTCAAGCCGCAGCATTCCAGCAGGTTGGTGCAGCTTTTAATCAACATTTACTCGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATACCAGGAGCTGCTCCGGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAATTCCTGGTGCTCCAGGGTATCTACCAACTCCCACAATGCCACCTATGATGGCCCCGCCTGGAGCTCCCATCCCTGGCCAAGTGAATATTCCTTCCAGGCCGCCTCCTCCAGCGCCAATTCCAGGGAGTGCACCTCAACCTTCTTCAACCAATGGCGCACCATTGGCTGCACCATCGACATACCAAGCAAACCCAGCCGCACAGGAATTCACCTCCATGGCTCAACCTTCCTCTGAGTCTAACCATTAG

Protein sequence

MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAQEFTSMAQPSSESNH

Homology

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BLAST of Pay0003195 vs. ExPASy Swiss-Prot
Match: F6HQ26 (U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g01170 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.4e-58
Identity = 141/216 (65.28%), Postives = 156/216 (72.22%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLG-----QRPRLPVLPTPVIP--GAAP-----GLMPGIRPPVLPR 120
            AAFQQVGAA+NQHL+       RPRLPVLPTP +P  G+AP      L+PG+RPPVLPR
Sbjct: 61  TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120

Query: 121 PIPGAPGYLPTPTMPPMMAPPGA---PIPGQVNIPSRPP----PPAPIPGSAPQPSSTNG 180
           P+PGAPGY+P P MP MMAPPGA   P+P   ++P RPP    PPA +PGS   P+S   
Sbjct: 121 PVPGAPGYMPAPGMPSMMAPPGAPSMPMPPLNSLP-RPPTMNVPPA-VPGSTSTPTSGGA 180

Query: 181 APLAAPSTYQANPAA------QEFTSMAQPSSESNH 192
             +     YQANPA         F   AQ   E+NH
Sbjct: 181 PSMMTQPMYQANPAGPTSGGFDSFNINAQ-GPEANH 213

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BLAST of Pay0003195 vs. ExPASy Swiss-Prot
Match: C5XYW4 (U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.2e-49
Identity = 127/200 (63.50%), Postives = 139/200 (69.50%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLG-----QRPRLPVLPTPVIPGAAP--GLMPGIRPPVLPRP---- 120
           AAAF Q GA FNQH+L       RPRLP+LPTP +P   P   LMPG+RPP+LP P    
Sbjct: 61  AAAF-QAGAPFNQHMLAFPGAVARPRLPILPTPGMPHGFPQAPLMPGVRPPILPAPGVPG 120

Query: 121 IPGAPGYLPTPTMPP-MMAPPGAPIPGQVNIPSRPP-------PPAPIPGSAPQPSS-TN 177
            PGAP  +P P  PP  M  PGAP PG +  P  PP        P P P + P P+S   
Sbjct: 121 YPGAPPTMPQPGAPPGSMPQPGAP-PGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTSGVP 180

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BLAST of Pay0003195 vs. ExPASy Swiss-Prot
Match: Q56XE4 (U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g03120 PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.9e-48
Identity = 122/200 (61.00%), Postives = 133/200 (66.50%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMP-GIRPPVLPRPIPGAPGYLPT 120
              +QQVGA FNQH+L  RPR P++         PG MP G+RPPVLPRP+    GY+P 
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM-------LPPGSMPMGMRPPVLPRPMMPPQGYMPP 120

Query: 121 PTMPPMMAPPGAPI-PGQVNIPSRPPPPAPIPGS-------APQPSSTNGAP-----LAA 180
           P +P MMAPPGAP+ P   N   RPP  APIPG        AP P    G P     L  
Sbjct: 121 PGVPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPP 180

Query: 181 PSTYQANPAAQEFTSMAQPS 187
           P  Y  NPAA    +   P+
Sbjct: 181 PPPYHTNPAAPPSGNFNNPN 192

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BLAST of Pay0003195 vs. ExPASy Swiss-Prot
Match: C5XZK6 (U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.4e-48
Identity = 139/234 (59.40%), Postives = 150/234 (64.10%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLG-----QRPRLPVLPTPVIPGA---APG--LMPGIRPPVLPRP- 120
           AAAF Q GA FNQH+L       RPRLP+LPTP +P     APG  LMPG+RPP+LP P 
Sbjct: 61  AAAF-QAGAPFNQHMLTFPGAVARPRLPILPTPGMPHGFPQAPGAPLMPGVRPPILPAPG 120

Query: 121 IPGAPGYLPT---PTMPP-MMAPPGAPIPGQVNIPSRPP-------PPAPIPGSAPQPSS 180
           IPG PG  PT   P  PP  M  PGAP PG +  P  PP        P P P + P P+S
Sbjct: 121 IPGYPGGPPTMLQPGAPPGSMPQPGAP-PGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTS 180

Query: 181 -TNGAPL----AAPSTYQANP----------------AAQEFTSMAQPSSESNH 192
              GAP+    A P+ YQ NP                A Q   S AQP SE NH
Sbjct: 181 GVPGAPIPNSAAPPAIYQTNPPAPAGPTSGAPPAPPTAPQPAFSYAQP-SEGNH 231

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BLAST of Pay0003195 vs. ExPASy Swiss-Prot
Match: Q32PA0 (U1 small nuclear ribonucleoprotein C OS=Bos taurus OX=9913 GN=SNRPC PE=2 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-18
Identity = 66/153 (43.14%), Postives = 82/153 (53.59%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct: 1   MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPG-AAPGLMPGIR---PPVLPRPIPGAPGY 120
            AAFQQ                 + P P +PG   PG+MP      PP++P   P  PG 
Sbjct: 61  TAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGM 120

Query: 121 LPTPTMPPMMAPPGAPIPGQVNIPSRPPPPAPI 150
           +P    P M  P G  +P     P   PP  P+
Sbjct: 121 MPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPM 146

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BLAST of Pay0003195 vs. ExPASy TrEMBL
Match: A0A5A7UNW2 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002060 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 7.2e-96
Identity = 189/197 (95.94%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA---- 180
           TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA    
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 --QEFTSMAQPSSESNH 192
               FTSMAQPSSESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

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BLAST of Pay0003195 vs. ExPASy TrEMBL
Match: A0A1S3BS92 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 7.2e-96
Identity = 189/197 (95.94%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA---- 180
           TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA    
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 --QEFTSMAQPSSESNH 192
               FTSMAQPSSESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

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BLAST of Pay0003195 vs. ExPASy TrEMBL
Match: A0A0A0K515 (U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.7e-95
Identity = 187/197 (94.92%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRPIPGAPGYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA---- 180
           TMPPMMAPPGAPIPGQVNIPSRPPPPAP+PGSAPQPSSTNGAPLAAPSTYQANPAA    
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 --QEFTSMAQPSSESNH 192
               FTSMAQPSSESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

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BLAST of Pay0003195 vs. ExPASy TrEMBL
Match: A0A6J1KWY5 (U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111497890 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.8e-86
Identity = 173/196 (88.27%), Postives = 179/196 (91.33%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PG APGLMPGIRPPV PRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPVPGAPGYLPNP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA---- 180
           TMPPMMAPPGA +PGQVN+PSRPPPPAPIPGS  QPSSTNGAPL AP TYQANPAA    
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTQQPSSTNGAPLTAPPTYQANPAAPGSG 180

Query: 181 --QEFTSMAQPSSESN 191
               FT+MAQP SESN
Sbjct: 181 GYDSFTTMAQP-SESN 195

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BLAST of Pay0003195 vs. ExPASy TrEMBL
Match: A0A6J1H7P8 (U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC111460839 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.0e-86
Identity = 173/196 (88.27%), Postives = 179/196 (91.33%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PG APGLMPGIRPPV PRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPLPGAPGYLPNP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA---- 180
           TMPPMMAPPGA +PGQVN+PSRPPPPAPIPGS PQ SSTNGAPL AP TYQANPAA    
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTPQLSSTNGAPLTAPQTYQANPAAPGSG 180

Query: 181 --QEFTSMAQPSSESN 191
               FT+MAQP SESN
Sbjct: 181 GYDSFTTMAQP-SESN 195

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BLAST of Pay0003195 vs. NCBI nr
Match: XP_008451425.1 (PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo] >KAA0057542.1 U1 small nuclear ribonucleoprotein C [Cucumis melo var. makuwa] >TYK18264.1 U1 small nuclear ribonucleoprotein C [Cucumis melo var. makuwa])

HSP 1 Score: 359.8 bits (922), Expect = 1.5e-95
Identity = 189/197 (95.94%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA---- 180
           TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA    
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 --QEFTSMAQPSSESNH 192
               FTSMAQPSSESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]

BLAST of Pay0003195 vs. NCBI nr
Match: XP_004148886.1 (U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical protein Csa_015811 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 5.7e-95
Identity = 187/197 (94.92%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRPIPGAPGYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA---- 180
           TMPPMMAPPGAPIPGQVNIPSRPPPPAP+PGSAPQPSSTNGAPLAAPSTYQANPAA    
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 --QEFTSMAQPSSESNH 192
               FTSMAQPSSESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]

BLAST of Pay0003195 vs. NCBI nr
Match: XP_038899936.1 (U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 177/197 (89.85%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPVPGAPGYLPAP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA---- 180
           TMPPMMAPPGAP+PGQVNIP+RPPPPAP+PGSAPQPSSTNGAPLA PS YQANPAA    
Sbjct: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPVPGSAPQPSSTNGAPLAPPSMYQANPAAPGSG 180

Query: 181 --QEFTSMAQPSSESNH 192
             + FT+MAQP SE NH
Sbjct: 181 GYESFTTMAQP-SEPNH 196

[Close]

BLAST of Pay0003195 vs. NCBI nr
Match: KAG6593155.1 (U1 small nuclear ribonucleoprotein C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 330.5 bits (846), Expect = 9.7e-87
Identity = 173/196 (88.27%), Postives = 179/196 (91.33%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PG  PGLMPGIRPPV PRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGVPGLMPGIRPPVFPRPVPGAPGYLPNP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA---- 180
           TMPPMMAPPGA +PGQVN+PSRPPPPAPIPGS PQPSSTNGAPL AP TYQANPAA    
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTPQPSSTNGAPLTAPQTYQANPAAPGSG 180

Query: 181 --QEFTSMAQPSSESN 191
               FT+MAQP SESN
Sbjct: 181 GYDSFTTMAQP-SESN 195

[Close]

BLAST of Pay0003195 vs. NCBI nr
Match: XP_023515032.1 (U1 small nuclear ribonucleoprotein C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.9 bits (842), Expect = 2.8e-86
Identity = 174/196 (88.78%), Postives = 179/196 (91.33%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PG APGLMPGIRPPV PRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPLPGAPGYLPNP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA---- 180
           TMPPMMAPPGA +PGQVNIPSRPPPPAPIPGS  QPSSTNGAPL AP TYQANPAA    
Sbjct: 121 TMPPMMAPPGALMPGQVNIPSRPPPPAPIPGSTQQPSSTNGAPLTAPQTYQANPAAPGSG 180

Query: 181 --QEFTSMAQPSSESN 191
               FT+MAQP SESN
Sbjct: 181 GYDSFTTMAQP-SESN 195

[Close]

BLAST of Pay0003195 vs. TAIR 10
Match: AT4G03120.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-49
Identity = 122/200 (61.00%), Postives = 133/200 (66.50%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMP-GIRPPVLPRPIPGAPGYLPT 120
              +QQVGA FNQH+L  RPR P++         PG MP G+RPPVLPRP+    GY+P 
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM-------LPPGSMPMGMRPPVLPRPMMPPQGYMPP 120

Query: 121 PTMPPMMAPPGAPI-PGQVNIPSRPPPPAPIPGS-------APQPSSTNGAP-----LAA 180
           P +P MMAPPGAP+ P   N   RPP  APIPG        AP P    G P     L  
Sbjct: 121 PGVPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPP 180

Query: 181 PSTYQANPAAQEFTSMAQPS 187
           P  Y  NPAA    +   P+
Sbjct: 181 PPPYHTNPAAPPSGNFNNPN 192

The following BLAST results are available for this feature:

BLAST of Pay0003195 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F6HQ26	3.4e-58	65.28	U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g0...	[more]
C5XYW4	2.2e-49	63.50	U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260...	[more]
Q56XE4	1.9e-48	61.00	U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g0312...	[more]
C5XZK6	5.4e-48	59.40	U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880...	[more]
Q32PA0	2.6e-18	43.14	U1 small nuclear ribonucleoprotein C OS=Bos taurus OX=9913 GN=SNRPC PE=2 SV=2	[more]

BLAST of Pay0003195 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UNW2	7.2e-96	95.94	U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BS92	7.2e-96	95.94	U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=...	[more]
A0A0A0K515	2.7e-95	94.92	U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 ...	[more]
A0A6J1KWY5	1.8e-86	88.27	U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111497890...	[more]
A0A6J1H7P8	3.0e-86	88.27	U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC1114608...	[more]

BLAST of Pay0003195 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451425.1	1.5e-95	95.94	PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo] >KAA0057542.1 U1 ...	[more]
XP_004148886.1	5.7e-95	94.92	U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical ...	[more]
XP_038899936.1	1.2e-89	89.85	U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida]	[more]
KAG6593155.1	9.7e-87	88.27	U1 small nuclear ribonucleoprotein C, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_023515032.1	2.8e-86	88.78	U1 small nuclear ribonucleoprotein C [Cucurbita pepo subsp. pepo]	[more]

BLAST of Pay0003195 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03120.1	1.3e-49	61.00	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 1..37 e-value: 1.4E-12 score: 57.8
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 1..61 e-value: 4.1E-30 score: 105.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..191
None	No IPR available	PANTHER	PTHR31148:SF2	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C	coord: 1..183
IPR013085	U1-C, C2H2-type zinc finger	PFAM	PF06220	zf-U1	coord: 1..38 e-value: 5.1E-22 score: 77.3
IPR017340	U1 small nuclear ribonucleoprotein C	PIRSF	PIRSF037969	U1-C	coord: 1..191 e-value: 4.1E-40 score: 136.8
IPR017340	U1 small nuclear ribonucleoprotein C	PANTHER	PTHR31148	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C	coord: 1..183
IPR017340	U1 small nuclear ribonucleoprotein C	HAMAP	MF_03153	U1_C	coord: 1..168 score: 11.82271
IPR000690	Matrin/U1-C, C2H2-type zinc finger	PROSITE	PS50171	ZF_MATRIN	coord: 4..36 score: 12.522273
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0003195.1	Pay0003195.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000395	mRNA 5'-splice site recognition
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0000243	commitment complex
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0071004	U2-type prespliceosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0030627	pre-mRNA 5'-splice site binding
molecular_function	GO:0030619	U1 snRNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding