Pay0003128 (gene) Melon (Payzawat) v1

Overview


Name	Pay0003128
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA-directed RNA polymerase subunit
Location	chr06: 5017295 .. 5019460 (+)
RNA-Seq Expression	Pay0003128
Synteny	Pay0003128

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCATTGGAAGAAAGCTCTCGTCTTTGGCTTGATCGACGTTTCTAGAAGCGCAGGCGATTTGGGATCGATCTTTTTCTTCATTACACTCTTCAAAATCTCTCCTTTTCTTTTTTCATACACAATCTTAGACTACCCCACTGATTCCTTCTGATTATCAGCTGCTAAAGCCCTAGCAGAAATTTTGTTCAATCTCTGGCTCAGGCTTCTCTCTTTTTCTACCCTTTACAAGATGAGTACCATGAAGTTTTGCCGGGAATGGTATGCATTATCATAATCACACTCTCGTCCACTTGCGCTTTCGTTCTTATGAAGTTTTTTTTCCCCGAAAATGTTGTAACCATTGATATTGTTATGTTGCAGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCCTGTCGCAACTGTGATCACCAGGTACCTTTATTCTTTTTTTTTTTTTTTGCATATTTCAATTTGTTTTGGAATGTGAACTTCTTTTCTTTGTTGTAGAATTGACCTAGGATAAGGAAGGTTATTTGGGCCGGATTCAAGACTATGCCCTTAAATGCTCGGGCTTGCCTCTTTAGTTCGTCATCCTGTGTTAAAGTTTTCCTTATGGCGTCATGTTATCTCTGTTTTTTAGCCTGCCCTTCTATGAACTTGGATGGACCTCTTTGTTCTTTGGCTTTTGTAGTTTATTTTCACATCTATAAATTTCAGTAAGGGAAGATTTATGAACATTATGATTTAACTAGTTATCATCTGATAATATGAAATGCTAACGAGCCCATACATTCCTTAGTTGAAGGTATGCATGTACGAAATCATAATTTGAGAAAAATGGTAGAAAGGGCCTCTCGTTTCTTTTAATCCAGGAGAGGTAGTGTAACCTTTATAAAATTTTTAGTATGATATATAGAACTTATTTAATTCTGAAGGTTCCAAGTTTGATCTAATTTTTCATTAATTTTAGAGTGTTATACTGTTATCTCACTCCCGGGAGATCGTGAGGTTGTCCAAGTTAATTTTCACGAGTTATCTTTGATTCTCCGGTTCCTTTACATTTATTTGTATTCTTAAATTCTTTGGCATGTTAACTATGGTGGGAAACTGGAAGGTTTTAAGCCTTGTTTCTAACCAATATAGTAGCCCTTTTTATTTGTTCCTAGAATTGCCACAAAATAACCCCATTGATGGGGGTGGACATATATAAGTACCCATATTTTACCCCCTGCTGTTCTCTTCTTTTTCACTTACTGATCCTCTTCTGTGTATGGACTTGTTTTATATCTAGATATTGATGGTTTCTTCTCCTCTTATTCCCAGTTTGTATTCTTTCATTTTTTTCATATATAAAAATTGTGTTTACAGGAAGTCGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGGGAACGCACTCAAGTTTTGCAAGATGTTGCTGCGGATCCAACCCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGTCCACTTTTCTTTTTTCGGTGGAAATACTTCCTTTTTGCTTCCGAACTTTGATTTACGAGGCTTGAGCACTCTTTTATTTTATTCTCTCGATTGTTAACGCCATAGATTTTCAACACATGCTTTGTTCTTTTCATCTCCCAAAATTTTAATAAGGTTCTTTTGAACGAGAAATATAAACTGTTAGTTTGCTTGTGTAGTTGTGTGAAATTCTGTCAAGCTGCTTGGAGGTTTCATCATGTTTATACTTGTATTTGCCTTGATGTCATTGCGTTGTGCCTGCAGGCCACTGCCAGAGGAGAGGAAGGTATGACATTGTTTTTCGTTTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGACTGATATCAAACACATCTCCAATATGCAATCGAAGTTTAATTGGCACACCAAATGTTTTAACCATTTTATGCTTGAAAGTGTAATCTTTTGCATTGTGGGTTTACAATTGTACTGATTCTATGTGGGTTGTTAAGAACCATTATCATTGCAACTTCTCAATTTCTCAATTTAACTTCCCAGAGATGTACCGGAACAATGCCATTTGTCTAAATTCGTTTCACTCCCGGCTTGGAAAAACTAATATCTTGAAAAAAAACCGTTGGAATTCGAG

mRNA sequence

CGCCATTGGAAGAAAGCTCTCGTCTTTGGCTTGATCGACGTTTCTAGAAGCGCAGGCGATTTGGGATCGATCTTTTTCTTCATTACACTCTTCAAAATCTCTCCTTTTCTTTTTTCATACACAATCTTAGACTACCCCACTGATTCCTTCTGATTATCAGCTGCTAAAGCCCTAGCAGAAATTTTGTTCAATCTCTGGCTCAGGCTTCTCTCTTTTTCTACCCTTTACAAGATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCCTGTCGCAACTGTGATCACCAGGAAGTCGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGGGAACGCACTCAAGTTTTGCAAGATGTTGCTGCGGATCCAACCCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGAGAGGAAGGTATGACATTGTTTTTCGTTTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGACTGATATCAAACACATCTCCAATATGCAATCGAAGTTTAATTGGCACACCAAATGTTTTAACCATTTTATGCTTGAAAGTGTAATCTTTTGCATTGTGGGTTTACAATTGTACTGATTCTATGTGGGTTGTTAAGAACCATTATCATTGCAACTTCTCAATTTCTCAATTTAACTTCCCAGAGATGTACCGGAACAATGCCATTTGTCTAAATTCGTTTCACTCCCGGCTTGGAAAAACTAATATCTTGAAAAAAAACCGTTGGAATTCGAG

Coding sequence (CDS)

ATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCCTGTCGCAACTGTGATCACCAGGAAGTCGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGGGAACGCACTCAAGTTTTGCAAGATGTTGCTGCGGATCCAACCCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGAGAGGAAGGTATGACATTGTTTTTCGTTTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGACTGA

Protein sequence

MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD

Homology

[Close]

BLAST of Pay0003128 vs. ExPASy Swiss-Prot
Match: Q6NLH0 (DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana OX=3702 GN=NRPB9A PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 6.3e-60
Identity = 99/114 (86.84%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADN+CVYRNE+HH+V ERTQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVA+DPTLPRTKAVRC++C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 61  DVASDPTLPRTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114

[Close]

BLAST of Pay0003128 vs. ExPASy Swiss-Prot
Match: Q8L5V0 (DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana OX=3702 GN=NRPB9B PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.1e-59
Identity = 98/114 (85.96%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE ADNNCVYRNE+HH+V E+TQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVA+DPTLPRTKAVRCA+C HGEAVFFQATARGEEGMTLFFVCCNPNC HRWR+
Sbjct: 61  DVASDPTLPRTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114

[Close]

BLAST of Pay0003128 vs. ExPASy Swiss-Prot
Match: Q32P73 (DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus OX=9913 GN=POLR2I PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.2e-38
Identity = 66/112 (58.93%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64  ADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 115
            DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]

BLAST of Pay0003128 vs. ExPASy Swiss-Prot
Match: P36954 (DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens OX=9606 GN=POLR2I PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.2e-38
Identity = 66/112 (58.93%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64  ADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 115
            DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]

BLAST of Pay0003128 vs. ExPASy Swiss-Prot
Match: P60898 (DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus OX=10090 GN=Polr2i PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.2e-38
Identity = 66/112 (58.93%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64  ADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 115
            DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]

BLAST of Pay0003128 vs. ExPASy TrEMBL
Match: A0A6J1I879 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470884 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.5e-64
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Pay0003128 vs. ExPASy TrEMBL
Match: A0A5A7U5C7 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001440 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.5e-64
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Pay0003128 vs. ExPASy TrEMBL
Match: A0A0A0L816 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G166240 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.5e-64
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Pay0003128 vs. ExPASy TrEMBL
Match: A0A6J1CBU6 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111009263 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.5e-64
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Pay0003128 vs. ExPASy TrEMBL
Match: A0A6J1FM50 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111445212 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.5e-64
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Pay0003128 vs. NCBI nr
Match: XP_008438942.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo] >XP_022137993.1 DNA-directed RNA polymerases II, IV and V subunit 9A isoform X2 [Momordica charantia] >XP_022939240.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita moschata] >XP_022972305.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita maxima] >XP_022972306.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita maxima] >XP_023539282.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita pepo subsp. pepo] >XP_023539283.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita pepo subsp. pepo] >XP_031737720.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis sativus] >XP_038880081.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Benincasa hispida] >KAA0049537.1 DNA-directed RNA polymerase, M/15kDa subunit [Cucumis melo var. makuwa] >KAG7029011.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita argyrosperma subsp. argyrosperma] >TYK16215.1 DNA-directed RNA polymerase, M/15kDa subunit [Cucumis melo var. makuwa])

HSP 1 Score: 254.2 bits (648), Expect = 5.3e-64
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Pay0003128 vs. NCBI nr
Match: XP_030503042.1 (DNA-directed RNA polymerases II, IV and V subunit 9A [Cannabis sativa] >XP_030503043.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cannabis sativa] >KAF4356255.1 hypothetical protein F8388_000702 [Cannabis sativa] >KAF4357777.1 hypothetical protein G4B88_025012 [Cannabis sativa])

HSP 1 Score: 253.1 bits (645), Expect = 1.2e-63
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Pay0003128 vs. NCBI nr
Match: XP_024019992.1 (DNA-directed RNA polymerases II, IV and V subunit 9A [Morus notabilis])

HSP 1 Score: 250.8 bits (639), Expect = 5.8e-63
Identity = 111/114 (97.37%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRD+KILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTK+VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Pay0003128 vs. NCBI nr
Match: XP_024963039.1 (DNA-directed RNA polymerases II, IV and V subunit 9A [Cynara cardunculus var. scolymus] >KVH87674.1 DNA-directed RNA polymerase, M/15kDa subunit [Cynara cardunculus var. scolymus])

HSP 1 Score: 249.6 bits (636), Expect = 1.3e-62
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+D+KILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQC HGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCGHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Pay0003128 vs. NCBI nr
Match: KAA8527386.1 (hypothetical protein F0562_034899 [Nyssa sinensis])

HSP 1 Score: 249.2 bits (635), Expect = 1.7e-62
Identity = 110/114 (96.49%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTK+VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Pay0003128 vs. TAIR 10
Match: AT3G16980.1 (RNA polymerases M/15 Kd subunit )

HSP 1 Score: 231.1 bits (588), Expect = 4.4e-61
Identity = 99/114 (86.84%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADN+CVYRNE+HH+V ERTQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVA+DPTLPRTKAVRC++C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 61  DVASDPTLPRTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114

[Close]

BLAST of Pay0003128 vs. TAIR 10
Match: AT4G16265.1 (RNA polymerases M/15 Kd subunit )

HSP 1 Score: 230.3 bits (586), Expect = 7.6e-61
Identity = 98/114 (85.96%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE ADNNCVYRNE+HH+V E+TQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVA+DPTLPRTKAVRCA+C HGEAVFFQATARGEEGMTLFFVCCNPNC HRWR+
Sbjct: 61  DVASDPTLPRTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114

The following BLAST results are available for this feature:

BLAST of Pay0003128 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NLH0	6.3e-60	86.84	DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana OX=...	[more]
Q8L5V0	1.1e-59	85.96	DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana OX=...	[more]
Q32P73	5.2e-38	58.93	DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus OX=9913 GN=POLR2I PE=1...	[more]
P36954	5.2e-38	58.93	DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens OX=9606 GN=POLR2I PE...	[more]
P60898	5.2e-38	58.93	DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus OX=10090 GN=Polr2i P...	[more]

BLAST of Pay0003128 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I879	2.5e-64	100.00	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470884 ...	[more]
A0A5A7U5C7	2.5e-64	100.00	DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0L816	2.5e-64	100.00	DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G166240 P...	[more]
A0A6J1CBU6	2.5e-64	100.00	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110092...	[more]
A0A6J1FM50	2.5e-64	100.00	DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11144521...	[more]

BLAST of Pay0003128 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438942.1	5.3e-64	100.00	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo] >...	[more]
XP_030503042.1	1.2e-63	99.12	DNA-directed RNA polymerases II, IV and V subunit 9A [Cannabis sativa] >XP_03050...	[more]
XP_024019992.1	5.8e-63	97.37	DNA-directed RNA polymerases II, IV and V subunit 9A [Morus notabilis]	[more]
XP_024963039.1	1.3e-62	97.37	DNA-directed RNA polymerases II, IV and V subunit 9A [Cynara cardunculus var. sc...	[more]
KAA8527386.1	1.7e-62	96.49	hypothetical protein F0562_034899 [Nyssa sinensis]	[more]

BLAST of Pay0003128 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16980.1	4.4e-61	86.84	RNA polymerases M/15 Kd subunit	[more]
AT4G16265.1	7.6e-61	85.96	RNA polymerases M/15 Kd subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 74..114 e-value: 2.3E-6 score: 37.2
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 75..113 e-value: 5.6E-11 score: 42.1
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 72..113 score: 12.77014
IPR001529	DNA-directed RNA polymerase, M/15kDa subunit	SMART	SM00661	rpol9cneu	coord: 5..58 e-value: 7.7E-16 score: 68.6
IPR001529	DNA-directed RNA polymerase, M/15kDa subunit	PFAM	PF02150	RNA_POL_M_15KD	coord: 4..36 e-value: 3.3E-11 score: 42.8
IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	PIRSF	PIRSF005586	RNApol_RpoM	coord: 4..114 e-value: 5.9E-20 score: 69.8
IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	PANTHER	PTHR11239	DNA-DIRECTED RNA POLYMERASE	coord: 1..114
None	No IPR available	GENE3D	2.20.25.10		coord: 1..46 e-value: 4.5E-26 score: 92.2
None	No IPR available	GENE3D	2.20.25.10		coord: 47..114 e-value: 3.4E-30 score: 105.7
None	No IPR available	PANTHER	PTHR11239:SF17	DNA-DIRECTED RNA POLYMERASE SUBUNIT	coord: 1..114
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 52..114
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 1..48
IPR019761	DNA-directed RNA polymerase M, 15kDa subunit, conserved site	PROSITE	PS01030	RNA_POL_M_15KD	coord: 6..32
IPR034012	Pol II subunit B9, C-terminal zinc ribbon	CDD	cd10508	Zn-ribbon_RPB9	coord: 64..113 e-value: 1.96154E-21 score: 78.0638

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0003128.1	Pay0003128.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001193	maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter
biological_process	GO:0006379	mRNA cleavage
biological_process	GO:0006283	transcription-coupled nucleotide-excision repair
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding