Pay0003022 (gene) Melon (Payzawat) v1

Overview


Name	Pay0003022
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1
Location	chr05: 2956434 .. 2959354 (-)
RNA-Seq Expression	Pay0003022
Synteny	Pay0003022

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAACTGGTGCTGAGCATTGGGAAAGTATTTTCATGTTTCATAAATACAACAGATTCTTCTTCCACTTCCTGCTGCTTATACAGATTTGAAATTGAAGACAGTAATAATTTTGATCAGAAACAGCCATTAATGGCCAAACAAACGACATCAACAACTCATGATCTTCTAGGATTCAAGGATGTGATTACTCATCAAAACAAAACTCTGCGGCCTCTTCAGTTCAACCCCAAGGTCAGATTACATTCCTAACCCTTTTTCTCCCTCCTCAATCTGAGCTTCTACTAATGACACTCTTGGTTTCAACTTTAAACATACATGGAAATTCTTTTGATTTTTTCTTTTCTTTTGTTATGTGTAATTTAGTTTAGATTCATTTTCGTTCTTATAACCTCAGCTTTTATTCTTTTTGTCAATGTTTTTATTTCTCTAGGTTTATTTTGGTTTTTAATTTTATTTAATAAAATAAACTATCGCTTTATAATTAAGGTTTATGAAAATACGAAAATTTAGTATAAGTGCGGTGACAGTCTCTCAGGACGTAGGTTCCTTCAGAGAAGATTGTCCGCAGCTTGAGTGTTTCTCACTCAACTCTATTAGATTATACTAATGGAGTTCACAATATTAATGAGTGAGATTTCTACAGAAGATAGTTTTAGCAGAAAGTTTATATCACAGACAAGACAAAGATATAGAAAAGTATACAAAAACTAAAATTGAACAAAAATAGTGTTTTTGACGTAAGAGTGAGATTCCAACTGGTTTTAAGGGTGTAAGGTTTAAAATATTATTTTATGGGACATGTTGGTGGGTTTGTTCGAGCATGACTTTATTAATACTTTTTCAAATTTTTTAGGTAAAATTGGAGTGAGTTGTTGGAAGACCTAGGCAACAGGGGAAAGTCTATGCTATGACTCAAAAAGAAGCGGAGAACAAAACGCACCAGAAACAATTATTATTTACGTGGTCACGATTCTATTTGAATTACCTGGCGGATTTTTATTTATATAAAGGGTGGCTAGACATTGAAACACAAACCACATAACGTCTGCCATGTTCTGTCTAGTTAATATTTCTGTATCATAAATGCTCTGATAATAAACACAAACATAATAAATGAGTATTAATAACAGAAAACATAAGATTAATTCGTCCTAAACGAAACAATTAGTTTTAAATGGGCTCTTTAAATGCTGTGTTTGTAAGTGTAGGAAATGTTATTCGTTAGCGGAATTAATAATTTGGAGAAGATGTGAGGTGACCACTCGTGATAGTAACAATTTTGCCGGTAAGCTTTAAATAGAAATTCCTAGGTCTATGTCTCCATCGGTTTTCTATAATATCTTGTTAAAAAATTTTTAGTGTACTTTTGATAAATAACGTGATGGAGATGTTACTAGGTATTAATCTTAGTATTTACTAAACACATACGAGACTAATTTTATAGTGATATAGATACATAGAGTCGTATAAAATACTTTCGAAAGGCTACCTGTACATAAGTATAGGTTGAATAATTGTATTTTTGTTTTTACACTAAAAACAGACATAGAAATTAACTTATATATACATTATTTTAGATTGAGGAACGCTATTTCGAGTCTGGGGGTGAGAAATTTGTAATATATGTCACTTAGCGAGACAAATATAATCGTGTGCATATTTCTTATTGTTTTGGTTGCTTTTGGTATTACTATAGTTTTTAATAGGGGGGCCGAGGCGGGGGGGGGGATGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGAAGTGTTTTCGAGAGGAGGAGGCGGAGGGGCTTGGCTGGGGGGAGGTGGTATAGTTTTAGGAGGGGTGAGGAGAGAGGCAAGGGGGGTTCTAGGAGAGGGTGGGTGAGAGGTGTGGGGGAGGGTTTGATATAGATAGAATGACGAAAAGTAGTATAGCTCTTGCAGGTAGTGAGTGGTGAGAAGGGTGTTGTTTGCATCGCAAACTTTTTTGCTGACATCAGGTCGTAGTTAGTGCACGGAGAGAAAAAGCTGTAAGGCCCAGCAGAAAGGGTTGATGATATTACTCCACTATCCCAAGATGTGCTGAAAGAGGGTTTACATTCTTTTGTATTTTTTTTAAAATAATAATTATTATATGATTCTCTTTTACGCTACTTTTTCTTCAGTTTAGAAATTTAATTTAAATTATTGGGTAGACGTATTCGGAAGATATTTGGAGTTCCTATTTCTTTCTGATAGAGAGATTGAGTTCACTATTGAATTGTTACCAAGAACAACAGCTATTTCACAGGCACCGTATATAATGGCTCCAAGCGAGCTAAAAAATATTGAAGATGCAGTTACAAGTATACATAATTGTTGCTTATGAGTGTAGATATATGTGTGTTATAGGCTCACCATAATTCGTGTGTTTTTTCGTCGTGGGAGCCCAGTGGCTATTTGGTGAAAAAGAATGTAACCCTCACGATTTTGTGTCAATATTTGTTATCTAGCAAATTGTTTTTCTATACGAATCATTAAACAAGGTTCAATACGTAACAATCAATCTGTTAATTATTTTTTTTCTTCACAAAAATAAATAACATTGTATAACAGTTCATTTGTACGAACTTAGTAGATTTTGTATACGTATACTTACGCAATCCATCTAAATAACTTATAGTAATATTGGGTGATAAAAATTACAATAGTCATAGGTTTGTTACATACTTACAGAGTTTAGTACTTTATGACTGTACTGTGTCATAGAGCGTGGAATCGCTGGACAGGTAGATAGATTTGTTGAGAAGGAGGGAGTTGAGATGGATTTATGTAGTTAACCATGGAGATTTTTTCTTTGAAGTTATGGAATGTATGTTTGCTACTAAAAGTGACAAAGAAAGTTGTAATGAAGAAAGTACTAGTGTATTGGGTTGA

mRNA sequence

ATGGGAAAACTGGTGCTGAGCATTGGGAAAGTATTTTCATGTTTCATAAATACAACAGATTCTTCTTCCACTTCCTGCTGCTTATACAGATTTGAAATTGAAGACAGTAATAATTTTGATCAGAAACAGCCATTAATGGCCAAACAAACGACATCAACAACTCATGATCTTCTAGGATTCAAGGATGTGATTACTCATCAAAACAAAACTCTGCGGCCTCTTCAGTTCAACCCCAAGAGGGTGGGTGAGAGGTGTGGGGGAGGGTTTGATATAGATAGAATGACGAAAAGTAGTATAGCTCTTGCAGGTAATTTGTTGAGAAGGAGGGAGTTGAGATGGATTTATGTAGTTAACCATGGAGATTTTTTCTTTGAAGTTATGGAATGTATGTTTGCTACTAAAAGTGACAAAGAAAGTTGTAATGAAGAAAGTACTAGTGTATTGGGTTGA

Coding sequence (CDS)

ATGGGAAAACTGGTGCTGAGCATTGGGAAAGTATTTTCATGTTTCATAAATACAACAGATTCTTCTTCCACTTCCTGCTGCTTATACAGATTTGAAATTGAAGACAGTAATAATTTTGATCAGAAACAGCCATTAATGGCCAAACAAACGACATCAACAACTCATGATCTTCTAGGATTCAAGGATGTGATTACTCATCAAAACAAAACTCTGCGGCCTCTTCAGTTCAACCCCAAGAGGGTGGGTGAGAGGTGTGGGGGAGGGTTTGATATAGATAGAATGACGAAAAGTAGTATAGCTCTTGCAGGTAATTTGTTGAGAAGGAGGGAGTTGAGATGGATTTATGTAGTTAACCATGGAGATTTTTTCTTTGAAGTTATGGAATGTATGTTTGCTACTAAAAGTGACAAAGAAAGTTGTAATGAAGAAAGTACTAGTGTATTGGGTTGA

Protein sequence

MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGFKDVITHQNKTLRPLQFNPKRVGERCGGGFDIDRMTKSSIALAGNLLRRRELRWIYVVNHGDFFFEVMECMFATKSDKESCNEESTSVLG

Homology

[Close]

BLAST of Pay0003022 vs. ExPASy TrEMBL
Match: A0A5A7V1Y2 (Copper-binding family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001300 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 5.2e-41
Identity = 99/140 (70.71%), Postives = 105/140 (75.00%), Query Frame = 0


Query: 1   MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60
           MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF
Sbjct: 1   MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60

Query: 61  KDVITHQNKTLRPLQFNPK----RVGERCGGGFDIDRMTKSSIALAGNLLRRRELRWIYV 120
           KDVITHQNKTLRPLQFNPK    RV   C G     R+ K    + G    + ++    V
Sbjct: 61  KDVITHQNKTLRPLQFNPKVVMVRVSMHCNG--CARRVEKLISKIQGVESWKVDMERERV 120

Query: 121 VNHGDFF-FEVMECMFATKS 136
           V  GD F FEVMEC+   KS
Sbjct: 121 VVTGDVFPFEVMECISKVKS 138

[Close]

BLAST of Pay0003022 vs. ExPASy TrEMBL
Match: A0A1S3C8H9 (uncharacterized protein LOC103497691 OS=Cucumis melo OX=3656 GN=LOC103497691 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 5.2e-41
Identity = 99/140 (70.71%), Postives = 105/140 (75.00%), Query Frame = 0


Query: 1   MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60
           MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF
Sbjct: 1   MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60

Query: 61  KDVITHQNKTLRPLQFNPK----RVGERCGGGFDIDRMTKSSIALAGNLLRRRELRWIYV 120
           KDVITHQNKTLRPLQFNPK    RV   C G     R+ K    + G    + ++    V
Sbjct: 61  KDVITHQNKTLRPLQFNPKVVMVRVSMHCNG--CARRVEKLISKIQGVESWKVDMERERV 120

Query: 121 VNHGDFF-FEVMECMFATKS 136
           V  GD F FEVMEC+   KS
Sbjct: 121 VVTGDVFPFEVMECISKVKS 138

[Close]

BLAST of Pay0003022 vs. ExPASy TrEMBL
Match: A0A0A0LIU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005290 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 9.2e-30
Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60
          MGKLV+SIGKVFSCFINTTD SSTSC LYR EIEDSNNFDQKQPLM KQTTSTTHDLLGF
Sbjct: 1  MGKLVMSIGKVFSCFINTTD-SSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGF 60

Query: 61 KDVITHQNKTLRPLQFNPK 80
          KDVITHQN+TL PLQFNPK
Sbjct: 61 KDVITHQNETL-PLQFNPK 77

[Close]

BLAST of Pay0003022 vs. ExPASy TrEMBL
Match: A0A6J1KFP0 (protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493873 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-05
Identity = 56/140 (40.00%), Postives = 70/140 (50.00%), Query Frame = 0


Query: 1   MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60
           MGK V  IGKVFSCF+N+  SSS       FEIE    F+ KQPLM  Q  S    LL F
Sbjct: 1   MGKAV-GIGKVFSCFMNSRASSSC------FEIE--GTFEPKQPLMPNQPNS---HLLRF 60

Query: 61  KDVITHQNKTLRPLQFNPK----RVGERCGGGFDIDRMTKSSIALAGNLLRRRELRWIYV 120
            DVI+H N+     Q NPK    RV   C G     R+ K+   + G    + +     V
Sbjct: 61  NDVISHTNQ-----QTNPKVVELRVSMHCNG--CARRVEKNIGKIEGVDSFKVDFERKTV 120

Query: 121 VNHGDF-FFEVMECMFATKS 136
           V  GD   FEV++C+   +S
Sbjct: 121 VVTGDVSSFEVIQCVSKVRS 121

[Close]

BLAST of Pay0003022 vs. ExPASy TrEMBL
Match: A0A6J1KDD7 (uncharacterized protein LOC111493873 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493873 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 44/91 (48.35%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 1  MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60
          MGK V  IGKVFSCF+N+  SSS       FEIE    F+ KQPLM  Q  S    LL F
Sbjct: 1  MGKAV-GIGKVFSCFMNSRASSSC------FEIE--GTFEPKQPLMPNQPNS---HLLRF 60

Query: 61 KDVITHQNKTLRPLQFNPK----RVGERCGG 88
           DVI+H N+     Q NPK    RV   C G
Sbjct: 61 NDVISHTNQ-----QTNPKVVELRVSMHCNG 74

[Close]

BLAST of Pay0003022 vs. NCBI nr
Match: XP_008458177.1 (PREDICTED: uncharacterized protein LOC103497691 [Cucumis melo] >KAA0061568.1 copper-binding family protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-40
Identity = 99/140 (70.71%), Postives = 105/140 (75.00%), Query Frame = 0


Query: 1   MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60
           MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF
Sbjct: 1   MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60

Query: 61  KDVITHQNKTLRPLQFNPK----RVGERCGGGFDIDRMTKSSIALAGNLLRRRELRWIYV 120
           KDVITHQNKTLRPLQFNPK    RV   C G     R+ K    + G    + ++    V
Sbjct: 61  KDVITHQNKTLRPLQFNPKVVMVRVSMHCNG--CARRVEKLISKIQGVESWKVDMERERV 120

Query: 121 VNHGDFF-FEVMECMFATKS 136
           V  GD F FEVMEC+   KS
Sbjct: 121 VVTGDVFPFEVMECISKVKS 138

[Close]

BLAST of Pay0003022 vs. NCBI nr
Match: XP_031736582.1 (uncharacterized protein LOC116402031 [Cucumis sativus] >KAE8651518.1 hypothetical protein Csa_019330 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-33
Identity = 91/140 (65.00%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 1   MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60
           MGKLV+SIGKVFSCFINTTD SSTSC LYR EIEDSNNFDQKQPLM KQTTSTTHDLLGF
Sbjct: 1   MGKLVMSIGKVFSCFINTTD-SSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGF 60

Query: 61  KDVITHQNKTLRPLQFNPK----RVGERCGGGFDIDRMTKSSIALAGNLLRRRELRWIYV 120
           KDVITHQN+TL PLQFNPK    RV   C G     R+ K    + G    + ++    V
Sbjct: 61  KDVITHQNETL-PLQFNPKVVVVRVSMHCNG--CARRVEKHISKIQGVESWKVDMERETV 120

Query: 121 VNHGDFF-FEVMECMFATKS 136
           V  GD F FEVM+C+   KS
Sbjct: 121 VVTGDVFPFEVMQCISKVKS 136

[Close]

BLAST of Pay0003022 vs. NCBI nr
Match: XP_022999545.1 (protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-05
Identity = 56/140 (40.00%), Postives = 70/140 (50.00%), Query Frame = 0


Query: 1   MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60
           MGK V  IGKVFSCF+N+  SSS       FEIE    F+ KQPLM  Q  S    LL F
Sbjct: 1   MGKAV-GIGKVFSCFMNSRASSSC------FEIE--GTFEPKQPLMPNQPNS---HLLRF 60

Query: 61  KDVITHQNKTLRPLQFNPK----RVGERCGGGFDIDRMTKSSIALAGNLLRRRELRWIYV 120
            DVI+H N+     Q NPK    RV   C G     R+ K+   + G    + +     V
Sbjct: 61  NDVISHTNQ-----QTNPKVVELRVSMHCNG--CARRVEKNIGKIEGVDSFKVDFERKTV 120

Query: 121 VNHGDF-FFEVMECMFATKS 136
           V  GD   FEV++C+   +S
Sbjct: 121 VVTGDVSSFEVIQCVSKVRS 121

[Close]

BLAST of Pay0003022 vs. NCBI nr
Match: XP_022999546.1 (uncharacterized protein LOC111493873 isoform X2 [Cucurbita maxima])

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-04
Identity = 44/91 (48.35%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 1  MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60
          MGK V  IGKVFSCF+N+  SSS       FEIE    F+ KQPLM  Q  S    LL F
Sbjct: 1  MGKAV-GIGKVFSCFMNSRASSSC------FEIE--GTFEPKQPLMPNQPNS---HLLRF 60

Query: 61 KDVITHQNKTLRPLQFNPK----RVGERCGG 88
           DVI+H N+     Q NPK    RV   C G
Sbjct: 61 NDVISHTNQ-----QTNPKVVELRVSMHCNG 74

[Close]

BLAST of Pay0003022 vs. NCBI nr
Match: XP_022946348.1 (protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 55.5 bits (132), Expect = 4.7e-04
Identity = 54/140 (38.57%), Postives = 72/140 (51.43%), Query Frame = 0


Query: 1   MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60
           MGK V  IGKVFSCF+N+   +S+SC    F+IE +  F+ KQPLM  Q  S    LL  
Sbjct: 1   MGKAV-GIGKVFSCFMNS--GASSSC----FQIEAT--FEPKQPLMPNQPNS---HLLRL 60

Query: 61  KDVITHQNKTLRPLQFNPK----RVGERCGGGFDIDRMTKSSIALAGNLLRRRELRWIYV 120
            DVI+H N+     Q NPK    RV   C G     R+ K+   + G    + +     V
Sbjct: 61  NDVISHTNQ-----QANPKVVELRVSMHCNG--CARRVEKNIGKIEGVDSYKVDFERKTV 120

Query: 121 VNHGDF-FFEVMECMFATKS 136
           V  GD   FEV++C+   +S
Sbjct: 121 VVTGDVSSFEVIQCVSKVRS 121

The following BLAST results are available for this feature:

BLAST of Pay0003022 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0003022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V1Y2	5.2e-41	70.71	Copper-binding family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S3C8H9	5.2e-41	70.71	uncharacterized protein LOC103497691 OS=Cucumis melo OX=3656 GN=LOC103497691 PE=...	[more]
A0A0A0LIU8	9.2e-30	91.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005290 PE=4 SV=1	[more]
A0A6J1KFP0	2.1e-05	40.00	protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 OS=Cucurbita maxima OX...	[more]
A0A6J1KDD7	1.3e-04	48.35	uncharacterized protein LOC111493873 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Pay0003022 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458177.1	1.1e-40	70.71	PREDICTED: uncharacterized protein LOC103497691 [Cucumis melo] >KAA0061568.1 cop...	[more]
XP_031736582.1	2.8e-33	65.00	uncharacterized protein LOC116402031 [Cucumis sativus] >KAE8651518.1 hypothetica...	[more]
XP_022999545.1	4.2e-05	40.00	protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita maxima]	[more]
XP_022999546.1	2.8e-04	48.35	uncharacterized protein LOC111493873 isoform X2 [Cucurbita maxima]	[more]
XP_022946348.1	4.7e-04	38.57	protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Pay0003022 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0003022.1	Pay0003022.1	mRNA