Pay0002556 (gene) Melon (Payzawat) v1

Overview


Name	Pay0002556
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Gag/pol protein
Location	chr05: 28000667 .. 28001128 (-)
RNA-Seq Expression	Pay0002556
Synteny	Pay0002556

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGCTTGATAGTTCAATTATTAGCTTCCGAAAAACTTAATCGCGATAATTATACGACATGGAAATCGAATCTTAACACGATACTAGTGGTTGATGATTTAAGGTTTGTCTTAACTGAGGAATGTCCTCAAACCCCTACCTCAAATGCAAACCGAACTAGTCGGGAAGCATACGATCGATGGATAAAAGCAAATGAAAAAGCCCGTGTCTACATCCTTGCTAGCATGTCTGATGTTTTAGCAAAGAAACATGAATCCTTAGCCACGGCTAAAGAGATAATGGATTCATTAAAAGGAATGTTTGGGCAACCAAAATGGTCCCTAAGACACAAGGCAATTAAATACATTTACACTAAGCGAATGAAGGAGGGGACCTCTATTAGAGAACATGTCCTGTACATGATGATACACTTCAATATTGCTGAGGTAAATGGTGGTGCCATCGATGAGGCTAATTAG

mRNA sequence

ATGAATAGCTTGATAGTTCAATTATTAGCTTCCGAAAAACTTAATCGCGATAATTATACGACATGGAAATCGAATCTTAACACGATACTAGTGGTTGATGATTTAAGGTTTGTCTTAACTGAGGAATGTCCTCAAACCCCTACCTCAAATGCAAACCGAACTAGTCGGGAAGCATACGATCGATGGATAAAAGCAAATGAAAAAGCCCGTGTCTACATCCTTGCTAGCATGTCTGATGTTTTAGCAAAGAAACATGAATCCTTAGCCACGGCTAAAGAGATAATGGATTCATTAAAAGGAATGTTTGGGCAACCAAAATGGTCCCTAAGACACAAGGCAATTAAATACATTTACACTAAGCGAATGAAGGAGGGGACCTCTATTAGAGAACATGTCCTGTACATGATGATACACTTCAATATTGCTGAGGTAAATGGTGGTGCCATCGATGAGGCTAATTAG

Coding sequence (CDS)

ATGAATAGCTTGATAGTTCAATTATTAGCTTCCGAAAAACTTAATCGCGATAATTATACGACATGGAAATCGAATCTTAACACGATACTAGTGGTTGATGATTTAAGGTTTGTCTTAACTGAGGAATGTCCTCAAACCCCTACCTCAAATGCAAACCGAACTAGTCGGGAAGCATACGATCGATGGATAAAAGCAAATGAAAAAGCCCGTGTCTACATCCTTGCTAGCATGTCTGATGTTTTAGCAAAGAAACATGAATCCTTAGCCACGGCTAAAGAGATAATGGATTCATTAAAAGGAATGTTTGGGCAACCAAAATGGTCCCTAAGACACAAGGCAATTAAATACATTTACACTAAGCGAATGAAGGAGGGGACCTCTATTAGAGAACATGTCCTGTACATGATGATACACTTCAATATTGCTGAGGTAAATGGTGGTGCCATCGATGAGGCTAATTAG

Protein sequence

MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPTSNANRTSREAYDRWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTKRMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN

Homology

[Close]

BLAST of Pay0002556 vs. ExPASy TrEMBL
Match: A0A5A7TWX1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001820 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-79
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPTSNANRTSREAYD 60
           MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTP SNANRTSREAYD
Sbjct: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPASNANRTSREAYD 60

Query: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120
           RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120

Query: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN 154
           RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN
Sbjct: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN 153

[Close]

BLAST of Pay0002556 vs. ExPASy TrEMBL
Match: A0A5D3BBF3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00820 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.7e-77
Identity = 149/153 (97.39%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPTSNANRTSREAYD 60
           MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQT  SNANRTSREAYD
Sbjct: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTLASNANRTSREAYD 60

Query: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120
           RWIKANEKARVYIL+SMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK
Sbjct: 61  RWIKANEKARVYILSSMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120

Query: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN 154
           +MKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN
Sbjct: 121 QMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN 153

[Close]

BLAST of Pay0002556 vs. ExPASy TrEMBL
Match: A0A5D3DL59 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001080 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 141/153 (92.16%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPTSNANRTSREAYD 60
           MNS IVQLL+SEKLN DNY  WKSNLNTILVVDDLRFVLTEECP+TPTSNANR SR+AYD
Sbjct: 1   MNSSIVQLLSSEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPETPTSNANRGSRKAYD 60

Query: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120
           RWIKANEKARVYILASMSDVLAKKHESLATAKEIM+SLKGMFGQPKWSLRH+AIKYIYTK
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQPKWSLRHEAIKYIYTK 120

Query: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN 154
           RMKEGTSIREHVL MMIHFNI EVNGGAIDEAN
Sbjct: 121 RMKEGTSIREHVLDMMIHFNIVEVNGGAIDEAN 153

[Close]

BLAST of Pay0002556 vs. ExPASy TrEMBL
Match: A0A5A7T0E9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00680 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 137/153 (89.54%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPTSNANRTSREAYD 60
           MNS IVQLLAS+KLN DNY TWKSNLNTILVVDDLRF+LTEECPQTPTSNANR SREAYD
Sbjct: 1   MNSSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYD 60

Query: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120
           RWIKANEKARVYILASMSDVLAKKHE LAT KEI+DSLKGMFGQP+WSLRH+AIKYIYTK
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHECLATTKEIVDSLKGMFGQPEWSLRHEAIKYIYTK 120

Query: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN 154
           RMK+GTS+REHVL MM+HFNI EVNGGAIDEAN
Sbjct: 121 RMKKGTSVREHVLDMMMHFNITEVNGGAIDEAN 153

[Close]

BLAST of Pay0002556 vs. ExPASy TrEMBL
Match: A0A5A7UH70 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold640G00060 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.2e-70
Identity = 135/153 (88.24%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPTSNANRTSREAYD 60
           MNS IVQLLASEKLN DNY  WKSNLNTILVVDDLRF+LT+ECPQTP SNANR SR+AYD
Sbjct: 1   MNSSIVQLLASEKLNGDNYAAWKSNLNTILVVDDLRFILTKECPQTPVSNANRASRKAYD 60

Query: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120
           RWIKANEK  VYILASMSDVLAKK+ESLATAKEI+DSLKGMFGQP+WSLRH+AIKYIYTK
Sbjct: 61  RWIKANEKGSVYILASMSDVLAKKYESLATAKEIIDSLKGMFGQPEWSLRHEAIKYIYTK 120

Query: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN 154
           RMKEGTS+REHVL MM+HFNIAEVNGGAIDEAN
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGAIDEAN 153

[Close]

BLAST of Pay0002556 vs. NCBI nr
Match: KAA0048103.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 304.3 bits (778), Expect = 6.0e-79
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPTSNANRTSREAYD 60
           MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTP SNANRTSREAYD
Sbjct: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPASNANRTSREAYD 60

Query: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120
           RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120

Query: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN 154
           RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN
Sbjct: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN 153

[Close]

BLAST of Pay0002556 vs. NCBI nr
Match: TYJ96447.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 297.7 bits (761), Expect = 5.6e-77
Identity = 149/153 (97.39%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPTSNANRTSREAYD 60
           MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQT  SNANRTSREAYD
Sbjct: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTLASNANRTSREAYD 60

Query: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120
           RWIKANEKARVYIL+SMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK
Sbjct: 61  RWIKANEKARVYILSSMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120

Query: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN 154
           +MKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN
Sbjct: 121 QMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN 153

[Close]

BLAST of Pay0002556 vs. NCBI nr
Match: KAA0041460.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK24334.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.2e-72
Identity = 141/153 (92.16%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPTSNANRTSREAYD 60
           MNS IVQLL+SEKLN DNY  WKSNLNTILVVDDLRFVLTEECP+TPTSNANR SR+AYD
Sbjct: 1   MNSSIVQLLSSEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPETPTSNANRGSRKAYD 60

Query: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120
           RWIKANEKARVYILASMSDVLAKKHESLATAKEIM+SLKGMFGQPKWSLRH+AIKYIYTK
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQPKWSLRHEAIKYIYTK 120

Query: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN 154
           RMKEGTSIREHVL MMIHFNI EVNGGAIDEAN
Sbjct: 121 RMKEGTSIREHVLDMMIHFNIVEVNGGAIDEAN 153

[Close]

BLAST of Pay0002556 vs. NCBI nr
Match: KAA0035676.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 278.9 bits (712), Expect = 2.7e-71
Identity = 137/153 (89.54%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPTSNANRTSREAYD 60
           MNS IVQLLAS+KLN DNY TWKSNLNTILVVDDLRF+LTEECPQTPTSNANR SREAYD
Sbjct: 1   MNSSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYD 60

Query: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120
           RWIKANEKARVYILASMSDVLAKKHE LAT KEI+DSLKGMFGQP+WSLRH+AIKYIYTK
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHECLATTKEIVDSLKGMFGQPEWSLRHEAIKYIYTK 120

Query: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN 154
           RMK+GTS+REHVL MM+HFNI EVNGGAIDEAN
Sbjct: 121 RMKKGTSVREHVLDMMMHFNITEVNGGAIDEAN 153

[Close]

BLAST of Pay0002556 vs. NCBI nr
Match: TYK29682.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.9 bits (699), Expect = 8.6e-70
Identity = 135/153 (88.24%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPTSNANRTSREAYD 60
           MNS IVQLLASEKLN DNY  WKSNLNTILVVDDLRF+LTEEC QTPT NANR SR+AYD
Sbjct: 1   MNSSIVQLLASEKLNGDNYVAWKSNLNTILVVDDLRFILTEECSQTPTLNANRASRKAYD 60

Query: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120
           RWIKANEKARVYILASMSDVLAKK+ESLATAKEIMDSLKG+FGQP+WSLRH+AIKYIYTK
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKYESLATAKEIMDSLKGIFGQPEWSLRHEAIKYIYTK 120

Query: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEAN 154
           RMKEGTS+REHVL MM+HFNIAE+NGG IDEAN
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEINGGTIDEAN 153

The following BLAST results are available for this feature:

BLAST of Pay0002556 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0002556 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWX1	2.9e-79	99.35	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G0018...	[more]
A0A5D3BBF3	2.7e-77	97.39	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G0082...	[more]
A0A5D3DL59	1.5e-72	92.16	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G0010...	[more]
A0A5A7T0E9	1.3e-71	89.54	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0068...	[more]
A0A5A7UH70	4.2e-70	88.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold640G0006...	[more]

BLAST of Pay0002556 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048103.1	6.0e-79	99.35	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ96447.1	5.6e-77	97.39	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0041460.1	3.2e-72	92.16	gag/pol protein [Cucumis melo var. makuwa] >TYK24334.1 gag/pol protein [Cucumis ...	[more]
KAA0035676.1	2.7e-71	89.54	gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis ...	[more]
TYK29682.1	8.6e-70	88.24	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0002556 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..144 e-value: 1.2E-9 score: 38.1
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 18..151
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 18..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0002556.1	Pay0002556.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding