Pay0002542 (gene) Melon (Payzawat) v1

Overview
NamePay0002542
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionE3 ubiquitin-protein ligase arkadia-A, putative
Locationchr08: 1400448 .. 1401130 (-)
RNA-Seq ExpressionPay0002542
SyntenyPay0002542
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCCACAAAATTCTCTGCTTTTGGCCGCATCTTAATGAATACCGTAAACTCTCAAATCCATCCATAGCCTCAATTGGCCTATTCAATCTCCTAATTCCATGGAATCTTCAACAAATCCAACCCCTTTTTCTCTCTACACCATTAACAAATTCCATCACAATCTCTTCCCAATAAAGAACAGAACAAAAAAGGAAAACAAAAATTGGGTCCAAAACCTGAAAATCACCTTTAATGGCTATAATCCACAGTGAAAATCTCCGACTATGAATTTAACAACAACCACAACAACCATGGAAGACTCTCATAAGCTTCAGAACATACCTTCTTTCAAATTGTCACGTTATTCCTCCAGCGCCCGAGACTCCGATGCCGGGGATGACCTCCGATACACTAGCTTGAAAGACATTCTTCTGAATTCGCCGTCGTACAGCGGCGTAAATGATTTCAACGAATTCAATTCGTCAAATATTTCGATCCGAAACGAGCTGGTGAAAAGAGCCGCATCAGCGTACCTTCAATCGGCGGCGATTTTGGTAAGCCGGAATGAAAGCGGTTTCGTCGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTCCGTTCCCGCTGGTGTGATTGTTTTCACCGTATTTTTGGCTTCTTTAGTTTTGCCTTAGACTAAGAACATCGTTAGACCTTCC

mRNA sequence

CCTCCCACAAAATTCTCTGCTTTTGGCCGCATCTTAATGAATACCGTAAACTCTCAAATCCATCCATAGCCTCAATTGGCCTATTCAATCTCCTAATTCCATGGAATCTTCAACAAATCCAACCCCTTTTTCTCTCTACACCATTAACAAATTCCATCACAATCTCTTCCCAATAAAGAACAGAACAAAAAAGGAAAACAAAAATTGGGTCCAAAACCTGAAAATCACCTTTAATGGCTATAATCCACAGTGAAAATCTCCGACTATGAATTTAACAACAACCACAACAACCATGGAAGACTCTCATAAGCTTCAGAACATACCTTCTTTCAAATTGTCACGTTATTCCTCCAGCGCCCGAGACTCCGATGCCGGGGATGACCTCCGATACACTAGCTTGAAAGACATTCTTCTGAATTCGCCGTCGTACAGCGGCGTAAATGATTTCAACGAATTCAATTCGTCAAATATTTCGATCCGAAACGAGCTGGTGAAAAGAGCCGCATCAGCGTACCTTCAATCGGCGGCGATTTTGGTAAGCCGGAATGAAAGCGGTTTCGTCGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTCCGTTCCCGCTGGTGTGATTGTTTTCACCGTATTTTTGGCTTCTTTAGTTTTGCCTTAGACTAAGAACATCGTTAGACCTTCC

Coding sequence (CDS)

ATGAATTTAACAACAACCACAACAACCATGGAAGACTCTCATAAGCTTCAGAACATACCTTCTTTCAAATTGTCACGTTATTCCTCCAGCGCCCGAGACTCCGATGCCGGGGATGACCTCCGATACACTAGCTTGAAAGACATTCTTCTGAATTCGCCGTCGTACAGCGGCGTAAATGATTTCAACGAATTCAATTCGTCAAATATTTCGATCCGAAACGAGCTGGTGAAAAGAGCCGCATCAGCGTACCTTCAATCGGCGGCGATTTTGGTAAGCCGGAATGAAAGCGGTTTCGTCGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTCCGTTCCCGCTGGTGTGATTGTTTTCACCGTATTTTTGGCTTCTTTAGTTTTGCCTTAGACTAA

Protein sequence

MNLTTTTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHRIFGFFSFALD
Homology
BLAST of Pay0002542 vs. ExPASy TrEMBL
Match: A0A5A7UBK0 (Putative E3 ubiquitin-protein ligase arkadia-A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G001310 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.6e-63
Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 0

Query: 1   MNLTTTTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVND 60
           MNL   TTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVND
Sbjct: 1   MNL---TTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVND 60

Query: 61  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF 120
           FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF
Sbjct: 61  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF 120

Query: 121 HRIFGFFSFALD 133
           HRIFGFFSFALD
Sbjct: 121 HRIFGFFSFALD 129

BLAST of Pay0002542 vs. ExPASy TrEMBL
Match: A0A0A0KKP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524030 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.2e-62
Identity = 127/132 (96.21%), Postives = 128/132 (96.97%), Query Frame = 0

Query: 1   MNLTTTTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVND 60
           MNL T TTTMED H+LQNIPSFKLSRYSSSARDSDA DDLRYTSLKDILLNSPSYSGVND
Sbjct: 1   MNL-TATTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVND 60

Query: 61  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF 120
           FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF
Sbjct: 61  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF 120

Query: 121 HRIFGFFSFALD 133
           HRIFGFFSFALD
Sbjct: 121 HRIFGFFSFALD 131

BLAST of Pay0002542 vs. ExPASy TrEMBL
Match: A0A6J1ISV4 (uncharacterized protein LOC111478115 OS=Cucurbita maxima OX=3661 GN=LOC111478115 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.0e-56
Identity = 115/130 (88.46%), Postives = 120/130 (92.31%), Query Frame = 0

Query: 1   MNLTTTTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVND 60
           MNLTT T TM+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+
Sbjct: 1   MNLTTPTATMDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNE 60

Query: 61  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF 120
           FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKLAALRSRWCDCF
Sbjct: 61  FNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCF 120

Query: 121 HRIFGFFSFA 131
            R FGFF FA
Sbjct: 121 PRFFGFFRFA 130

BLAST of Pay0002542 vs. ExPASy TrEMBL
Match: A0A6J1EJR7 (uncharacterized protein LOC111433238 OS=Cucurbita moschata OX=3662 GN=LOC111433238 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-55
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0

Query: 1   MNLTTTTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVND 60
           MNLTT TT M+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+
Sbjct: 1   MNLTTPTTAMDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNE 60

Query: 61  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF 120
           FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKLAALRSRWCDCF
Sbjct: 61  FNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCF 120

Query: 121 HRIFGFFSF 130
            R FGFF F
Sbjct: 121 PRFFGFFRF 129

BLAST of Pay0002542 vs. ExPASy TrEMBL
Match: A0A6J1CYB8 (uncharacterized protein LOC111015712 OS=Momordica charantia OX=3673 GN=LOC111015712 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.6e-44
Identity = 98/107 (91.59%), Postives = 101/107 (94.39%), Query Frame = 0

Query: 9   TMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSN 68
           T+ +SHKLQNIPSFKLSRYSS ARDSDAGDDLRY SLKDILLNSPSYSGVNDFN+FNSSN
Sbjct: 3   TISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSN 62

Query: 69  ISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSR 116
           ISIRNELVKRAASAYLQSAAILVSRNES FV FWERLR KLAALRSR
Sbjct: 63  ISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKLAALRSR 109

BLAST of Pay0002542 vs. NCBI nr
Match: KAA0052530.1 (putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa])

HSP 1 Score: 250.0 bits (637), Expect = 1.1e-62
Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 0

Query: 1   MNLTTTTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVND 60
           MNL   TTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVND
Sbjct: 1   MNL---TTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVND 60

Query: 61  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF 120
           FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF
Sbjct: 61  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF 120

Query: 121 HRIFGFFSFALD 133
           HRIFGFFSFALD
Sbjct: 121 HRIFGFFSFALD 129

BLAST of Pay0002542 vs. NCBI nr
Match: XP_022977989.1 (uncharacterized protein LOC111478115 [Cucurbita maxima])

HSP 1 Score: 227.6 bits (579), Expect = 6.1e-56
Identity = 115/130 (88.46%), Postives = 120/130 (92.31%), Query Frame = 0

Query: 1   MNLTTTTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVND 60
           MNLTT T TM+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+
Sbjct: 1   MNLTTPTATMDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNE 60

Query: 61  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF 120
           FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKLAALRSRWCDCF
Sbjct: 61  FNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCF 120

Query: 121 HRIFGFFSFA 131
            R FGFF FA
Sbjct: 121 PRFFGFFRFA 130

BLAST of Pay0002542 vs. NCBI nr
Match: XP_023544918.1 (uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 227.6 bits (579), Expect = 6.1e-56
Identity = 115/130 (88.46%), Postives = 120/130 (92.31%), Query Frame = 0

Query: 1   MNLTTTTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVND 60
           MNLTT TT M+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+
Sbjct: 56  MNLTTPTTAMDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNE 115

Query: 61  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF 120
           FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKLAALRSRWCDCF
Sbjct: 116 FNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCF 175

Query: 121 HRIFGFFSFA 131
            R FGFF FA
Sbjct: 176 PRFFGFFRFA 185

BLAST of Pay0002542 vs. NCBI nr
Match: XP_022925985.1 (uncharacterized protein LOC111433238 [Cucurbita moschata] >KAG6581442.1 hypothetical protein SDJN03_21444, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 225.7 bits (574), Expect = 2.3e-55
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0

Query: 1   MNLTTTTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVND 60
           MNLTT TT M+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+
Sbjct: 1   MNLTTPTTAMDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNE 60

Query: 61  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF 120
           FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKLAALRSRWCDCF
Sbjct: 61  FNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCF 120

Query: 121 HRIFGFFSF 130
            R FGFF F
Sbjct: 121 PRFFGFFRF 129

BLAST of Pay0002542 vs. NCBI nr
Match: KAE8647751.1 (hypothetical protein Csa_003767 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 110/113 (97.35%), Postives = 111/113 (98.23%), Query Frame = 0

Query: 10  MEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNI 69
           MED H+LQNIPSFKLSRYSSSARDSDA DDLRYTSLKDILLNSPSYSGVNDFNEFNSSNI
Sbjct: 1   MEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNI 60

Query: 70  SIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHR 123
           SIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHR
Sbjct: 61  SIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHR 113

BLAST of Pay0002542 vs. TAIR 10
Match: AT4G18395.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 3.3e-07
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 0

Query: 33  DSDAGDDLRYTSLKDILLNS---------PSYSGVND----FNEFNSSNISIRNELVKRA 92
           D +  ++L+YTSLKD++ +S         P YS  +      +E +SSNI+I NELVKRA
Sbjct: 12  DDNDQNNLQYTSLKDVISSSDGFGSLFCHPQYSVPSQDGFLLSEMDSSNIAISNELVKRA 71

Query: 93  ASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHRIFGFFS 129
           AS Y+QS+ I+++ + + F  F   L+ K  A+ +   DC   +   F+
Sbjct: 72  ASMYVQSSMIVIAPDTNWFQRFC--LKAKHQAVAA--IDCLRPVCRIFA 116

BLAST of Pay0002542 vs. TAIR 10
Match: AT5G06280.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 4.4e-04
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 0

Query: 42  YTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSR 101
           YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ   +L S 
Sbjct: 57  YTSLRDIISSPINSSLNLPSINGSCSPVISTAAGDISIRNRLVKQAALSYLQ-PTVLTSS 116

Query: 102 NESGFVGFWERLRIKLAA 112
           ++S    F+ R+ + L+A
Sbjct: 117 DDSAGSQFFRRVWLHLSA 133

BLAST of Pay0002542 vs. TAIR 10
Match: AT5G06280.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 4.4e-04
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 0

Query: 42  YTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSR 101
           YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ   +L S 
Sbjct: 57  YTSLRDIISSPINSSLNLPSINGSCSPVISTAAGDISIRNRLVKQAALSYLQ-PTVLTSS 116

Query: 102 NESGFVGFWERLRIKLAA 112
           ++S    F+ R+ + L+A
Sbjct: 117 DDSAGSQFFRRVWLHLSA 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UBK05.6e-6397.73Putative E3 ubiquitin-protein ligase arkadia-A OS=Cucumis melo var. makuwa OX=11... [more]
A0A0A0KKP96.2e-6296.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524030 PE=4 SV=1[more]
A0A6J1ISV43.0e-5688.46uncharacterized protein LOC111478115 OS=Cucurbita maxima OX=3661 GN=LOC111478115... [more]
A0A6J1EJR71.1e-5588.37uncharacterized protein LOC111433238 OS=Cucurbita moschata OX=3662 GN=LOC1114332... [more]
A0A6J1CYB82.6e-4491.59uncharacterized protein LOC111015712 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
Match NameE-valueIdentityDescription
KAA0052530.11.1e-6297.73putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa][more]
XP_022977989.16.1e-5688.46uncharacterized protein LOC111478115 [Cucurbita maxima][more]
XP_023544918.16.1e-5688.46uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo][more]
XP_022925985.12.3e-5588.37uncharacterized protein LOC111433238 [Cucurbita moschata] >KAG6581442.1 hypothet... [more]
KAE8647751.11.3e-5397.35hypothetical protein Csa_003767 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT4G18395.13.3e-0735.78unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
AT5G06280.14.4e-0439.74unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G06280.34.4e-0439.74unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34569:SF15UBIQUITIN-PROTEIN LIGASE ARKADIA-A, PUTATIVE-RELATEDcoord: 12..131
NoneNo IPR availablePANTHERPTHR34569EXPRESSED PROTEINcoord: 12..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0002542.1Pay0002542.1mRNA