Pay0001949 (gene) Melon (Payzawat) v1

Overview


Name	Pay0001949
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DUF4219 domain-containing protein
Location	chr09: 9047282 .. 9047569 (-)
RNA-Seq Expression	Pay0001949
Synteny	Pay0001949

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGCAATAGCATGGTTCCACTCCAAGTCCCAATGCTCAATAAAAGAAACTATGATAATTGGAGTATCAAGATGAAAGTTATTTTTGGCTCACAAGATGTGTGAGAGATTATAGAGAAAGGATACGTCGAACCAAAGAATGATGGTGGTCTTTCTCAAGCACAAAAAGATACTTTGAGAGATTCAAGAAAAAGACACAAGAAGACTCTCTATCTAATCTATCAAGATTTAGATGACGACGCATTTGAGAAAGTTTCAGAAGCAAAGACGATGCAAATAGCATGA

mRNA sequence

ATGACAAGCAATAGCATGGTTCCACTCCAAGTCCCAATGCTCAATAAAAGAAACTATGATAATTGGAGTATCAAGATGAAAATTATAGAGAAAGGATACGTCGAACCAAAGAATGATGGTGGTCTTTCTCAAGCACAAAAAGATACTTTGAGAGATTCAAGAAAAAGACACAAGAAGACTCTCTATCTAATCTATCAAGATTTAGATGACGACGCATTTGAGAAAGTTTCAGAAGCAAAGACGATGCAAATAGCATGA

Coding sequence (CDS)

ATGACAAGCAATAGCATGGTTCCACTCCAAGTCCCAATGCTCAATAAAAGAAACTATGATAATTGGAGTATCAAGATGAAAATTATAGAGAAAGGATACGTCGAACCAAAGAATGATGGTGGTCTTTCTCAAGCACAAAAAGATACTTTGAGAGATTCAAGAAAAAGACACAAGAAGACTCTCTATCTAATCTATCAAGATTTAGATGACGACGCATTTGAGAAAGTTTCAGAAGCAAAGACGATGCAAATAGCATGA

Protein sequence

MTSNSMVPLQVPMLNKRNYDNWSIKMKIIEKGYVEPKNDGGLSQAQKDTLRDSRKRHKKTLYLIYQDLDDDAFEKVSEAKTMQIA

Homology

[Close]

BLAST of Pay0001949 vs. ExPASy TrEMBL
Match: A0A2I0W8B3 (DUF4219 domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca021744 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.4e-22
Identity = 58/95 (61.05%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1  MTSNSMVPLQVPMLNKRNYDNWSIKMK----------IIEKGYVEPKNDGGLSQAQKDTL 60
          M SN M+P QVP LN  NYDNWSIKMK          +IEKGY EP+++  LSQAQKD+L
Sbjct: 1  MASNGMIPFQVPTLNNSNYDNWSIKMKALLGVQDVWEMIEKGYKEPQDESSLSQAQKDSL 60

Query: 61 RDSRKRHKKTLYLIYQDLDDDAFEKVSEAKTMQIA 86
          RDSRKR KK LYLI+Q LDDD+FEK+ +AK+ + A
Sbjct: 61 RDSRKRDKKALYLIFQGLDDDSFEKIFDAKSAKEA 95

[Close]

BLAST of Pay0001949 vs. ExPASy TrEMBL
Match: A0A6J0M5U4 (uncharacterized protein LOC108839444 OS=Raphanus sativus OX=3726 GN=LOC108839444 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.4e-21
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 3  SNSMVPLQVPMLNKRNYDNWSIKM----------KIIEKGYVEPKNDGGLSQAQKDTLRD 62
          +N+ VPLQVP+L K NYDNWS++M          +I+EKG+ EP+NDGGLSQ QKD LRD
Sbjct: 2  ANNGVPLQVPLLTKSNYDNWSLRMMAILGAHDVWEIVEKGFNEPENDGGLSQTQKDGLRD 61

Query: 63 SRKRHKKTLYLIYQDLDDDAFEKVSEAKTMQIA 86
          SRKR KK L LIYQ LD+D FEKV+ AKT + A
Sbjct: 62 SRKRDKKALCLIYQGLDEDTFEKVAGAKTSKEA 94

[Close]

BLAST of Pay0001949 vs. ExPASy TrEMBL
Match: A0A2Z6M9T7 (CCHC-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_289180 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 9.9e-21
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 3  SNSMVPLQVPMLNKRNYDNWSIKM----------KIIEKGYVEPKNDGGLSQAQKDTLRD 62
          +N+ VP QVPML K NYDNWS++M          +I+EKG V P+N+G LSQ QKD+LRD
Sbjct: 2  ANNGVPFQVPMLTKSNYDNWSLRMVALLGAHDVCEIVEKGLVIPENEGTLSQTQKDSLRD 61

Query: 63 SRKRHKKTLYLIYQDLDDDAFEKVSEAKTMQIA 86
          SRKR KK LYLIYQ LD+D FEKVS AKT + A
Sbjct: 62 SRKRDKKALYLIYQGLDEDTFEKVSGAKTAKEA 94

[Close]

BLAST of Pay0001949 vs. ExPASy TrEMBL
Match: A0A2Z6MWI9 (DUF4219 domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_201290 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.8e-20
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 3  SNSMVPLQVPMLNKRNYDNWSIKM----------KIIEKGYVEPKNDGGLSQAQKDTLRD 62
          +N+ VPLQVPML K NYDNWS++M          +I+EKG V P+N+G LSQ QKD+LRD
Sbjct: 2  ANNGVPLQVPMLTKSNYDNWSLRMVALLGAHDVWEIVEKGLVIPENEGTLSQTQKDSLRD 61

Query: 63 SRKRHKKTLYLIYQDLDDDAFEKVSEAKTMQIA 86
          SRKR KK L LIYQ LD+D FEKVS AKT + A
Sbjct: 62 SRKRDKKALCLIYQGLDEDTFEKVSGAKTAKKA 94

[Close]

BLAST of Pay0001949 vs. ExPASy TrEMBL
Match: A0A0D2ZYH9 (DUF4219 domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.9e-20
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 3  SNSMVPLQVPMLNKRNYDNWSIKM----------KIIEKGYVEPKNDGGLSQAQKDTLRD 62
          +N+ VP QVP+L K NYDNWS+K+          +I+EKG+ EP+NDGGLSQ QKD LRD
Sbjct: 2  ANNGVPFQVPLLTKSNYDNWSLKLMTILGAHDVWEIVEKGFNEPENDGGLSQTQKDGLRD 61

Query: 63 SRKRHKKTLYLIYQDLDDDAFEKVSEAKTMQIA 86
          SRKR KK L LI+Q LD+D FEKV+ AKT + A
Sbjct: 62 SRKRDKKALCLIHQGLDEDTFEKVAGAKTSKEA 94

[Close]

BLAST of Pay0001949 vs. NCBI nr
Match: XP_028556025.1 (uncharacterized protein LOC110109975 [Dendrobium catenatum])

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22
Identity = 59/95 (62.11%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 1  MTSNSMVPLQVPMLNKRNYDNWSIKMK----------IIEKGYVEPKNDGGLSQAQKDTL 60
          M SN M+P QVP LN  NYDNWSIKMK          +IEKGY EP+++  LSQAQKD+L
Sbjct: 1  MASNGMIPFQVPTLNNSNYDNWSIKMKALLGAQDVWEMIEKGYNEPQDESSLSQAQKDSL 60

Query: 61 RDSRKRHKKTLYLIYQDLDDDAFEKVSEAKTMQIA 86
          RDSRKR KK LYLI+Q LDDD+FEK+S+AK+ + A
Sbjct: 61 RDSRKRDKKALYLIFQGLDDDSFEKISDAKSAKEA 95

[Close]

BLAST of Pay0001949 vs. NCBI nr
Match: XP_020688719.2 (uncharacterized protein LOC110104092 [Dendrobium catenatum])

HSP 1 Score: 114.4 bits (285), Expect = 4.9e-22
Identity = 58/95 (61.05%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1  MTSNSMVPLQVPMLNKRNYDNWSIKMK----------IIEKGYVEPKNDGGLSQAQKDTL 60
          M SN M+P QVP LN  NYDNWSIKMK          +IEKGY EP+++  LSQAQKD+L
Sbjct: 1  MASNGMIPFQVPTLNNSNYDNWSIKMKALLGAQDVWEMIEKGYKEPQDESSLSQAQKDSL 60

Query: 61 RDSRKRHKKTLYLIYQDLDDDAFEKVSEAKTMQIA 86
          RDSRKR KK LYLI+Q LDDD+FEK+S+ K+ + A
Sbjct: 61 RDSRKRDKKALYLIFQGLDDDSFEKLSDVKSAKEA 95

[Close]

BLAST of Pay0001949 vs. NCBI nr
Match: PKU71906.1 (hypothetical protein MA16_Dca021744 [Dendrobium catenatum])

HSP 1 Score: 114.4 bits (285), Expect = 4.9e-22
Identity = 58/95 (61.05%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1  MTSNSMVPLQVPMLNKRNYDNWSIKMK----------IIEKGYVEPKNDGGLSQAQKDTL 60
          M SN M+P QVP LN  NYDNWSIKMK          +IEKGY EP+++  LSQAQKD+L
Sbjct: 1  MASNGMIPFQVPTLNNSNYDNWSIKMKALLGVQDVWEMIEKGYKEPQDESSLSQAQKDSL 60

Query: 61 RDSRKRHKKTLYLIYQDLDDDAFEKVSEAKTMQIA 86
          RDSRKR KK LYLI+Q LDDD+FEK+ +AK+ + A
Sbjct: 61 RDSRKRDKKALYLIFQGLDDDSFEKIFDAKSAKEA 95

[Close]

BLAST of Pay0001949 vs. NCBI nr
Match: XP_013690858.2 (uncharacterized protein LOC106394846, partial [Brassica napus])

HSP 1 Score: 111.3 bits (277), Expect = 4.1e-21
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 3   SNSMVPLQVPMLNKRNYDNWSIKM----------KIIEKGYVEPKNDGGLSQAQKDTLRD 62
           +N+ VP QVP+L K NYDNWS++M          +I+EKG+VEP+NDGGLSQ QKD LRD
Sbjct: 27  ANNDVPFQVPLLTKSNYDNWSLRMMAILGAHDVWEIVEKGFVEPENDGGLSQTQKDGLRD 86

Query: 63  SRKRHKKTLYLIYQDLDDDAFEKVSEAKTMQIA 86
           SRKR KK L LIYQ LD+D FEKV+ AKT + A
Sbjct: 87  SRKRDKKALCLIYQGLDEDTFEKVAGAKTSKEA 119

[Close]

BLAST of Pay0001949 vs. NCBI nr
Match: XP_028216659.1 (uncharacterized protein LOC114398694 [Glycine soja] >XP_040868822.1 uncharacterized protein LOC102669108 [Glycine max])

HSP 1 Score: 111.3 bits (277), Expect = 4.1e-21
Identity = 58/95 (61.05%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1  MTSNSMVPLQVPMLNKRNYDNWSIKMK----------IIEKGYVEPKNDGGLSQAQKDTL 60
          MTS+SMVP QVP+LN  NYDNWSI MK          I+EKG+ E +N   LSQ Q+D+L
Sbjct: 1  MTSSSMVPFQVPILNNNNYDNWSINMKALLGVQDVLEIVEKGHTETENKDSLSQTQRDSL 60

Query: 61 RDSRKRHKKTLYLIYQDLDDDAFEKVSEAKTMQIA 86
          RDSRKR KK LYLIYQ L+DDAFEKV +AK+++ A
Sbjct: 61 RDSRKRDKKALYLIYQGLNDDAFEKVLKAKSVKEA 95

[Close]

BLAST of Pay0001949 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 3.6e-23
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 1  MTSNSMVPLQVPMLNKRNYDNWSIKMK----------IIEKGYVEPKNDGGLSQAQKDTL 60
          M SN+ VP QVP+L K NYDNWS++MK          I+EKG++EP+N+G LSQ QKD L
Sbjct: 1  MASNN-VPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGL 60

Query: 61 RDSRKRHKKTLYLIYQDLDDDAFEKVSEA 80
          RDSRKR KK L LIYQ LD+D FEKV EA
Sbjct: 61 RDSRKRDKKALCLIYQGLDEDTFEKVVEA 88

The following BLAST results are available for this feature:

BLAST of Pay0001949 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0001949 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I0W8B3	2.4e-22	61.05	DUF4219 domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca0...	[more]
A0A6J0M5U4	4.4e-21	61.29	uncharacterized protein LOC108839444 OS=Raphanus sativus OX=3726 GN=LOC108839444...	[more]
A0A2Z6M9T7	9.9e-21	61.29	CCHC-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_28...	[more]
A0A2Z6MWI9	3.8e-20	61.29	DUF4219 domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_2012...	[more]
A0A0D2ZYH9	4.9e-20	59.14	DUF4219 domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 P...	[more]

BLAST of Pay0001949 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_028556025.1	1.3e-22	62.11	uncharacterized protein LOC110109975 [Dendrobium catenatum]	[more]
XP_020688719.2	4.9e-22	61.05	uncharacterized protein LOC110104092 [Dendrobium catenatum]	[more]
PKU71906.1	4.9e-22	61.05	hypothetical protein MA16_Dca021744 [Dendrobium catenatum]	[more]
XP_013690858.2	4.1e-21	61.29	uncharacterized protein LOC106394846, partial [Brassica napus]	[more]
XP_028216659.1	4.1e-21	61.05	uncharacterized protein LOC114398694 [Glycine soja] >XP_040868822.1 uncharacteri...	[more]

BLAST of Pay0001949 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48720.1	3.6e-23	61.80	unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0001949.1	Pay0001949.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding