Pay0001707 (gene) Melon (Payzawat) v1

Overview


Name	Pay0001707
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	high mobility group B protein 3-like
Location	chr11: 10350255 .. 10351812 (-)
RNA-Seq Expression	Pay0001707
Synteny	Pay0001707

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAACCCAACGCACAGTAATCTTCTTCTTCACGATCATTTTCAGCTTCTTCTTTTTGCTTTTCATCTCCAATATGTTCTTACATTCTCTTGTTTCTATTTCTTTATGTAAGTTTTTACTTTCTGTACGATTCGTTTCTTTGCTTTTTGTAGTTTCTCTTCAACTTCGATTCTATGCAATCTTCATCTCTGTATTTTTTTTTTCTCTTCTTATGCTTTCATTTTTCTTTCTAATTTATTTTTATATTCTTTTGTAATGTTTCGCGGCTTTGTTCGTTCCTAATTGAGTTGAATTTTACAGCCTGCGTTGTGTAATTCTTGTATGTTTTTAGTAGTTTGCTTTCCTATTTCGCAAGGTTTCTTCATTTCTCTGCATACCTGAACTACTCTACTGATATTATTCATTTATTCTGTATTTTAACTCTTTTAGTTTTCCTACGTTTTTGGCTATATACTAAATTGAATATACTCCTAAAGCTTTTATCCAATTTGCTATTACGTTTTCTTGTTATATAGATATACGATTTTTATCATTATCCGCTTTTTGAAGGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGTAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGTAAATATAATTTATAATTGAGGCTGCTTCCGTTTTGAAAGTCGTTCTTACATTCTAGTTTTTCTTAGATTTGTCCATTCTGATTTCGATTTCTTGTTTTGGAAATGATAGGGAGGAATTTAGAATGATGTTCAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTAAGATCTTATACTGTTGTTTTGATCAGCATTACGTTCTTATTATTCCTCCATATTTATGTTTTAGATATGGCTGAGTGGAGGATCGGAGGACTTCTTGAGTTAGCTAGATTTTGTTATTTGCGTTTAACTGTGTTTTGTTAATTTGCAGGTCGGCAAAGCTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGTAAGACTGCGATTTCTTATTTTGGTACTATTTTCGTAGAACACTAATTCGAGACTATCAACAATAAACGATTAAGGAATAAGATTGGAGGTTTTTAGTTCTTCCACTTTAATTGAAGATAGTAACACGTTTTGTTCTCGGTATTCAATTCGAGACTAATTGTCGATGCAAATATGTGGAACTTGTGTTTCTCTTCCTCAGGAAAAAGCTCCGTACGCTGAAAAAGCTTTGAAAAGAAAGGCAGAATATGAAATAGCTCTTGAAGCATACAAGAACAATTTCGTAATTAACTTGTTCCCACTCTCTCTCTCCTTTCAGTCTTTCTCCTTCACTTCGTCAGAACATCACCAAGGTTTTATTTATCACCGAATCTCTCTTCTCTCTAACATCTCCTGGTTGACAGAATTGCTACACGGTGGCTGAACCTGAACTCGAAATGCCAACAGAATCACAAAAATCAACCTCCGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTAG

mRNA sequence

ATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAACCCAACGCACAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGTAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGGAGGAATTTAGAATGATGTTCAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGCTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTACGCTGAAAAAGCTTTGAAAAGAAAGGCAGAATATGAAATAGCTCTTGAAGCATACAAGAACAATTTCAATTGCTACACGGTGGCTGAACCTGAACTCGAAATGCCAACAGAATCACAAAAATCAACCTCCGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTAG

Coding sequence (CDS)

ATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAACCCAACGCACAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGTAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGGAGGAATTTAGAATGATGTTCAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGCTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTACGCTGAAAAAGCTTTGAAAAGAAAGGCAGAATATGAAATAGCTCTTGAAGCATACAAGAACAATTTCAATTGCTACACGGTGGCTGAACCTGAACTCGAAATGCCAACAGAATCACAAAAATCAACCTCCGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTAG

Protein sequence

MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS

Homology

[Close]

BLAST of Pay0001707 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-24
Identity = 67/127 (52.76%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 13  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGK 72
           K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGK
Sbjct: 27  KRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGK 86

Query: 73  AGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTS 132
           AGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N           E   ES+KS S
Sbjct: 87  AGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRS 144

Query: 133 EVNDDTE 140
           E+ND+ E
Sbjct: 147 EINDEDE 144

[Close]

BLAST of Pay0001707 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-22
Identity = 69/133 (51.88%), Postives = 85/133 (63.91%), Query Frame = 0


Query: 12  KKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVG 71
           K  N   +K++ A+ K TK   KD N PKRP +AFFVFME+FR  +KE+ P+ K+  VVG
Sbjct: 9   KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVG 68

Query: 72  KAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKST 131
           KAGG+KWK ++ AEKAP+  KA KRK EYE  L+AY N       AE E     ES KS 
Sbjct: 69  KAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAY-NKKQAAGAAEEE-----ESDKSR 128

Query: 132 SEVNDDTEQEASS 145
           SEVNDD E +  S
Sbjct: 129 SEVNDDDEDQDGS 135

[Close]

BLAST of Pay0001707 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.6e-22
Identity = 65/127 (51.18%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEK 77
           KL   K   K  K   KD N PKRP++AFFVFME+FR+ +KE+ P  K+   VGKAGGEK
Sbjct: 14  KLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEK 73

Query: 78  WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDD 137
           WKS+SD+EKAPY  KA KRK EYE  ++AY          E   +   ES KS SEVND+
Sbjct: 74  WKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL------EEGPKEDEESDKSVSEVNDE 133

Query: 138 TEQEASS 145
            + E  S
Sbjct: 134 DDAEDGS 134

[Close]

BLAST of Pay0001707 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-20
Identity = 60/115 (52.17%), Postives = 74/115 (64.35%), Query Frame = 0


Query: 30  KSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPY 89
           K+  KD N PKRPA+AFFVFME+FR  FK++ P  K+   VGKA G+KWKS+SD+EKAPY
Sbjct: 29  KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPY 88

Query: 90  AEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
             KA KRK EYE  ++AY          E   +   ES KS SEVND+ + E  S
Sbjct: 89  VAKAEKRKVEYEKNIKAYNKKL------EEGPKEDEESDKSVSEVNDEDDAEDGS 137

[Close]

BLAST of Pay0001707 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.1e-20
Identity = 66/142 (46.48%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 8   VVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAG 67
           +  +KK  A K ++   + K+     KD N PKRP +AFFVFMEEFR +F ++ P+ KA 
Sbjct: 17  LAVNKKGAATKARKPAGKGKAA----KDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAV 76

Query: 68  PVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPT-- 127
             VGKA G KWK+MSDAEKAPY  K+ KRK EYE  + AY          + + E PT  
Sbjct: 77  SAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYN---------KKQAEGPTGG 136

Query: 128 ---ESQKSTSEVNDDTEQEASS 145
              ES+KS SEVND+ + E  S
Sbjct: 137 DEEESEKSVSEVNDEDDDEEGS 145

[Close]

BLAST of Pay0001707 vs. ExPASy TrEMBL
Match: A0A1S3C2L9 (high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.9e-70
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60
           MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE 120
           FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE 120

Query: 121 LEMPTESQKSTSEVNDDTEQEASSSS 147
           LEMPTESQKSTSEVNDDTEQEASSSS
Sbjct: 121 LEMPTESQKSTSEVNDDTEQEASSSS 146

[Close]

BLAST of Pay0001707 vs. ExPASy TrEMBL
Match: A0A1S3C1W5 (HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-67
Identity = 146/154 (94.81%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60
           MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 61  FPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKNNFN 120
           FPDAKAGPVVGKAGGEKWKSMSDA        EKAPYAEKALKRKAEYEIALEAYKNNFN
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYKNNFN 120

Query: 121 CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS 147
           CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
Sbjct: 121 CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS 154

[Close]

BLAST of Pay0001707 vs. ExPASy TrEMBL
Match: A0A5D3DLQ9 (High mobility group B protein 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00210 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 6.6e-57
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 26  MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAE 85
           MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAE
Sbjct: 1   MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAE 60

Query: 86  KAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSS 145
           KAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSS
Sbjct: 61  KAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSS 120

Query: 146 S 147
           S
Sbjct: 121 S 121

[Close]

BLAST of Pay0001707 vs. ExPASy TrEMBL
Match: A0A5A7UHY3 (HMG1/2-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1248G00010 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.1e-54
Identity = 120/129 (93.02%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 26  MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDA- 85
           MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDA 
Sbjct: 1   MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAV 60

Query: 86  -------EKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDD 145
                  EKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVND+
Sbjct: 61  RLRFLILEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDE 120

Query: 146 TEQEASSSS 147
           TEQEASSSS
Sbjct: 121 TEQEASSSS 129

[Close]

BLAST of Pay0001707 vs. ExPASy TrEMBL
Match: A0A6J1G5W3 (high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111451070 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.0e-53
Identity = 121/149 (81.21%), Postives = 129/149 (86.58%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSK---KKDQNAPKRPATAFFVFMEEFRMMF 60
           MRAL+NAVVTHKKPNA+ LK+RKAEMKSTKS    KKDQNAPKRPATAFF+FMEEFR  F
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA 120
           KE+FPDAKAGP VGKAGGEKWKSMSDAEKAPYAEK+L RKAEYEIALE YK   NC   A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAA 120

Query: 121 EPELEMPTESQKSTSEVNDDTEQEASSSS 147
           E E+EM TESQKSTS+V DD EQEASSSS
Sbjct: 121 EAEVEMSTESQKSTSDVRDDGEQEASSSS 149

[Close]

BLAST of Pay0001707 vs. NCBI nr
Match: XP_008455870.1 (PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60
           MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE 120
           FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE 120

Query: 121 LEMPTESQKSTSEVNDDTEQEASSSS 147
           LEMPTESQKSTSEVNDDTEQEASSSS
Sbjct: 121 LEMPTESQKSTSEVNDDTEQEASSSS 146

[Close]

BLAST of Pay0001707 vs. NCBI nr
Match: XP_008455869.1 (PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo])

HSP 1 Score: 265.4 bits (677), Expect = 2.9e-67
Identity = 146/154 (94.81%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60
           MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 61  FPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKNNFN 120
           FPDAKAGPVVGKAGGEKWKSMSDA        EKAPYAEKALKRKAEYEIALEAYKNNFN
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYKNNFN 120

Query: 121 CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS 147
           CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
Sbjct: 121 CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS 154

[Close]

BLAST of Pay0001707 vs. NCBI nr
Match: XP_031737208.1 (high mobility group B protein 3-like isoform X2 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 9.4e-58
Identity = 130/146 (89.04%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60
           MRALRNAVVTHKKPN QKLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQ
Sbjct: 1   MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQ 60

Query: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE 120
           FPDAKAGPVVGK GGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN NC       
Sbjct: 61  FPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNC----PQN 120

Query: 121 LEMPTESQKSTSEVNDDTEQEASSSS 147
             MPTESQKSTSEVNDDTEQEASSSS
Sbjct: 121 HRMPTESQKSTSEVNDDTEQEASSSS 142

[Close]

BLAST of Pay0001707 vs. NCBI nr
Match: TYK24219.1 (high mobility group B protein 1-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 229.9 bits (585), Expect = 1.4e-56
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 26  MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAE 85
           MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAE
Sbjct: 1   MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAE 60

Query: 86  KAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSS 145
           KAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSS
Sbjct: 61  KAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSS 120

Query: 146 S 147
           S
Sbjct: 121 S 121

[Close]

BLAST of Pay0001707 vs. NCBI nr
Match: XP_038902242.1 (high mobility group B protein 1-like [Benincasa hispida])

HSP 1 Score: 224.2 bits (570), Expect = 7.5e-55
Identity = 126/149 (84.56%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSK---KKDQNAPKRPATAFFVFMEEFRMMF 60
           MRALR+AVV+ KK NAQ LKQRK EMKSTKSK   KKDQNAPKRPATAFFVFMEEFR  F
Sbjct: 1   MRALRSAVVSRKKLNAQMLKQRKTEMKSTKSKKATKKDQNAPKRPATAFFVFMEEFRKTF 60

Query: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA 120
           KE+FPDAKAGPVVGKAGGEKWKSMSD EKAPYAEKAL+RKAEYEIALEAYK N NC   A
Sbjct: 61  KEEFPDAKAGPVVGKAGGEKWKSMSDTEKAPYAEKALRRKAEYEIALEAYKKNLNCCADA 120

Query: 121 EPELEMPTESQKSTSEVNDDTEQEASSSS 147
           E E+EMPTESQKSTSEV+DD EQEASSSS
Sbjct: 121 EAEIEMPTESQKSTSEVHDDAEQEASSSS 149

[Close]

BLAST of Pay0001707 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 111.7 bits (278), Expect = 5.0e-25
Identity = 67/127 (52.76%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 13  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGK 72
           K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGK
Sbjct: 27  KRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGK 86

Query: 73  AGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTS 132
           AGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N           E   ES+KS S
Sbjct: 87  AGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRS 144

Query: 133 EVNDDTE 140
           E+ND+ E
Sbjct: 147 EINDEDE 144

[Close]

BLAST of Pay0001707 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 111.7 bits (278), Expect = 5.0e-25
Identity = 67/127 (52.76%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 13  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGK 72
           K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGK
Sbjct: 27  KRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGK 86

Query: 73  AGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTS 132
           AGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N           E   ES+KS S
Sbjct: 87  AGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRS 144

Query: 133 EVNDDTE 140
           E+ND+ E
Sbjct: 147 EINDEDE 144

[Close]

BLAST of Pay0001707 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 111.7 bits (278), Expect = 5.0e-25
Identity = 67/127 (52.76%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 13  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGK 72
           K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGK
Sbjct: 27  KRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGK 86

Query: 73  AGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTS 132
           AGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N           E   ES+KS S
Sbjct: 87  AGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRS 144

Query: 133 EVNDDTE 140
           E+ND+ E
Sbjct: 147 EINDEDE 144

[Close]

BLAST of Pay0001707 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 111.7 bits (278), Expect = 5.0e-25
Identity = 67/127 (52.76%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 13  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGK 72
           K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGK
Sbjct: 27  KRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGK 86

Query: 73  AGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTS 132
           AGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N           E   ES+KS S
Sbjct: 87  AGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRS 144

Query: 133 EVNDDTE 140
           E+ND+ E
Sbjct: 147 EINDEDE 144

[Close]

BLAST of Pay0001707 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 105.1 bits (261), Expect = 4.7e-23
Identity = 65/127 (51.18%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEK 77
           KL   K   K  K   KD N PKRP++AFFVFME+FR+ +KE+ P  K+   VGKAGGEK
Sbjct: 14  KLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEK 73

Query: 78  WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDD 137
           WKS+SD+EKAPY  KA KRK EYE  ++AY          E   +   ES KS SEVND+
Sbjct: 74  WKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL------EEGPKEDEESDKSVSEVNDE 133

Query: 138 TEQEASS 145
            + E  S
Sbjct: 134 DDAEDGS 134

The following BLAST results are available for this feature:

BLAST of Pay0001707 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49595	7.1e-24	52.76	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P40619	1.7e-22	51.88	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P93047	6.6e-22	51.18	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49596	2.8e-20	52.17	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P26585	8.1e-20	46.48	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of Pay0001707 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C2L9	8.9e-70	100.00	high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C1W5	1.4e-67	94.81	HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1	[more]
A0A5D3DLQ9	6.6e-57	100.00	High mobility group B protein 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7UHY3	3.1e-54	93.02	HMG1/2-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1G5W3	2.0e-53	81.21	high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]

BLAST of Pay0001707 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455870.1	1.8e-69	100.00	PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo]	[more]
XP_008455869.1	2.9e-67	94.81	PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo]	[more]
XP_031737208.1	9.4e-58	89.04	high mobility group B protein 3-like isoform X2 [Cucumis sativus]	[more]
TYK24219.1	1.4e-56	100.00	high mobility group B protein 1-like isoform X2 [Cucumis melo var. makuwa]	[more]
XP_038902242.1	7.5e-55	84.56	high mobility group B protein 1-like [Benincasa hispida]	[more]

BLAST of Pay0001707 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51880.1	5.0e-25	52.76	high mobility group B1	[more]
AT3G51880.2	5.0e-25	52.76	high mobility group B1	[more]
AT3G51880.3	5.0e-25	52.76	high mobility group B1	[more]
AT3G51880.4	5.0e-25	52.76	high mobility group B1	[more]
AT1G20696.1	4.7e-23	51.18	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..36
None	No IPR available	COILS	Coil	Coil	coord: 90..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..39
None	No IPR available	PANTHER	PTHR46261:SF10	HIGH MOBILITY GROUP B PROTEIN 3-LIKE	coord: 1..144
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 39..105 e-value: 1.43291E-13 score: 59.5637
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 38..109 e-value: 1.6E-20 score: 84.2
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 39..108 e-value: 6.8E-19 score: 68.1
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 39..108 score: 17.941784
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 24..108 e-value: 1.5E-23 score: 85.1
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 30..111
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0001707.1	Pay0001707.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin