Pay0001684 (gene) Melon (Payzawat) v1

Overview


Name	Pay0001684
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr09: 18189687 .. 18190981 (-)
RNA-Seq Expression	Pay0001684
Synteny	Pay0001684

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAATGACGTAGCTCGCCCCATTAGCACCATCCTTGATGGCACAAACTATATTACCTGGGCCCACCAAATGAGGAGTTTTCTAATAGGTCGAAAATTATGGCGTATCGTCACGGGAGATATTACCAAACCTGTCAAACCTATTGTCCATGAAACCAGTGCAGAGGATATTCAGTACATTGAAAGACTTGAGGATTGGGACAGCAAAAATCACCAAATTATCACTTGGTTAGGTAATACTTCTATTCCAGCCATCCACACTCAGTTTGATGCCTTTGATAGTGCAAAAGAACTCTGGGATTTTCTATACACACGTTTTCAGTCTATAGGACTGGCTCATTATTATCAGCTGCACTCTACACTTGTTAGTCTCAATCAGGAAATGGGACAATCTGTGAATGAATATCTCGCCACCCTTCAGCCTATTTGGACTCAGTTGGATCAAGCAAAAATTAGCCCTGATCATATTCGTCTCATCAAAGTATTAATGGGTCTCCGACCAGAATATGAATCCGTTCGTGCTGCTCTGTTACATCGTAATCCTCTGCCATCTCTTGATGCTGCTGTTCAAGAAATCTTATTTGAGGAGAAAAGACTTGGCATTGTCTCCTCCCTGCACTCTGATGTCGCCCTTGCAACTACTCATCTCCGACAAGCTAATGAGACCATCTTCTGTAAGAATTGCAAACTTCATGGTCATAAGTTTGCTAACTGTCCTACTATTGAGTGCAGGTATTGTCACAAACGAGGTCATATTTTGGATAATTGTCCAACACGCCCACCCCGCCCTCCTGGTCATTCACACAAACCCAAATTTTCCCATAAAGCCGGTTCTTCATCTGTTGTTGCTGCTGCTACATCTGACATCACTGAACCTTCGAGTCTTCAGTTGACTGATCTTCATGATTTACTGAAACAGGTGATCTCTTCCCAATCTACTGCTCTTGCTGTCACCCCAGGTACCTCTTGGCTCCTTGACTCTGCCTGTTGTAATCACATGACTTCTGACATTTCCTTATTATCATCTCATATTCCTGTTCAATCACTTCCCCCGATCCACTCTGCTGATGGTAATTCCATGTCTATTTCCCACATTGGCACCGTTAATACACCCACCATCAAACTTTCCAACACCTATCATGTCCCAAATCTCACATTCAACCTAGCTTCTGTTGGTCAATTATGTGATCTCGGACTTACTATTATTTTTTCCTCTCATGGTTGTCAGGTTCAGGATTCTCAGACGGGACAAGTGATTGGTACGGGACGGAAGGTGGGTCGATTATTTGA

mRNA sequence

ATGGAGAAAAATGACGTAGCTCGCCCCATTAGCACCATCCTTGATGGCACAAACTATATTACCTGGGCCCACCAAATGAGGAGTTTTCTAATAGGTCGAAAATTATGGCGTATCGTCACGGGAGATATTACCAAACCTGTCAAACCTATTGTCCATGAAACCAGTGCAGAGGATATTCAGTACATTGAAAGACTTGAGGATTGGGACAGCAAAAATCACCAAATTATCACTTGGTTAGGTAATACTTCTATTCCAGCCATCCACACTCAGTTTGATGCCTTTGATAGTGCAAAAGAACTCTGGGATTTTCTATACACACGTTTTCAGTCTATAGGACTGGCTCATTATTATCAGCTGCACTCTACACTTGTTAGTCTCAATCAGGAAATGGGACAATCTGTGAATGAATATCTCGCCACCCTTCAGCCTATTTGGACTCAGTTGGATCAAGCAAAAATTAGCCCTGATCATATTCGTCTCATCAAAGTATTAATGGGTCTCCGACCAGAATATGAATCCGTTCGTGCTGCTCTGTTACATCGTAATCCTCTGCCATCTCTTGATGCTGCTGTTCAAGAAATCTTATTTGAGGAGAAAAGACTTGGCATTGTCTCCTCCCTGCACTCTGATGTCGCCCTTGCAACTACTCATCTCCGACAAGCTAATGAGACCATCTTCTGTAAGAATTGCAAACTTCATGGTCATAAGTTTGCTAACTGTCCTACTATTGAGTGCAGGTATTGTCACAAACGAGGTCATATTTTGGATAATTGTCCAACACGCCCACCCCGCCCTCCTGGTCATTCACACAAACCCAAATTTTCCCATAAAGCCGGTTCTTCATCTGTTGTTGCTGCTGCTACATCTGACATCACTGAACCTTCGAGTCTTCAGTTGACTGATCTTCATGATTTACTGAAACAGGTGATCTCTTCCCAATCTACTGCTCTTGCTGTCACCCCAGGTTCAGGATTCTCAGACGGGACAAGTGATTGGTACGGGACGGAAGGTGGGTCGATTATTTGA

Coding sequence (CDS)

ATGGAGAAAAATGACGTAGCTCGCCCCATTAGCACCATCCTTGATGGCACAAACTATATTACCTGGGCCCACCAAATGAGGAGTTTTCTAATAGGTCGAAAATTATGGCGTATCGTCACGGGAGATATTACCAAACCTGTCAAACCTATTGTCCATGAAACCAGTGCAGAGGATATTCAGTACATTGAAAGACTTGAGGATTGGGACAGCAAAAATCACCAAATTATCACTTGGTTAGGTAATACTTCTATTCCAGCCATCCACACTCAGTTTGATGCCTTTGATAGTGCAAAAGAACTCTGGGATTTTCTATACACACGTTTTCAGTCTATAGGACTGGCTCATTATTATCAGCTGCACTCTACACTTGTTAGTCTCAATCAGGAAATGGGACAATCTGTGAATGAATATCTCGCCACCCTTCAGCCTATTTGGACTCAGTTGGATCAAGCAAAAATTAGCCCTGATCATATTCGTCTCATCAAAGTATTAATGGGTCTCCGACCAGAATATGAATCCGTTCGTGCTGCTCTGTTACATCGTAATCCTCTGCCATCTCTTGATGCTGCTGTTCAAGAAATCTTATTTGAGGAGAAAAGACTTGGCATTGTCTCCTCCCTGCACTCTGATGTCGCCCTTGCAACTACTCATCTCCGACAAGCTAATGAGACCATCTTCTGTAAGAATTGCAAACTTCATGGTCATAAGTTTGCTAACTGTCCTACTATTGAGTGCAGGTATTGTCACAAACGAGGTCATATTTTGGATAATTGTCCAACACGCCCACCCCGCCCTCCTGGTCATTCACACAAACCCAAATTTTCCCATAAAGCCGGTTCTTCATCTGTTGTTGCTGCTGCTACATCTGACATCACTGAACCTTCGAGTCTTCAGTTGACTGATCTTCATGATTTACTGAAACAGGTGATCTCTTCCCAATCTACTGCTCTTGCTGTCACCCCAGGTTCAGGATTCTCAGACGGGACAAGTGATTGGTACGGGACGGAAGGTGGGTCGATTATTTGA

Protein sequence

MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLHSTLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLTDLHDLLKQVISSQSTALAVTPGSGFSDGTSDWYGTEGGSII

Homology

[Close]

BLAST of Pay0001684 vs. ExPASy TrEMBL
Match: A0A1S3BBA1 (uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=4 SV=1)

HSP 1 Score: 688.7 bits (1776), Expect = 1.2e-194
Identity = 338/342 (98.83%), Postives = 341/342 (99.71%), Query Frame = 0


Query: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60
           MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60

Query: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120
           YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH
Sbjct: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120

Query: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180
           STLVSLNQE+GQSVNEYLATLQPIWTQL+QAKISPDHIRLIKVLMGLRPEYESVRAALLH
Sbjct: 121 STLVSLNQEVGQSVNEYLATLQPIWTQLEQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180

Query: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240
           RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC
Sbjct: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240

Query: 241 PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAAT-SDITEPSSLQL 300
           PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAAT SDITEPSSLQL
Sbjct: 241 PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSSDITEPSSLQL 300

Query: 301 TDLHDLLKQVISSQSTALAVTPGSGFSDGTSDWYGTEGGSII 342
           TDLHDLLKQVISSQSTALAVTPGSGFSDGTSDW+GTEGGSII
Sbjct: 301 TDLHDLLKQVISSQSTALAVTPGSGFSDGTSDWHGTEGGSII 342

[Close]

BLAST of Pay0001684 vs. ExPASy TrEMBL
Match: A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)

HSP 1 Score: 659.8 bits (1701), Expect = 6.0e-186
Identity = 322/325 (99.08%), Postives = 324/325 (99.69%), Query Frame = 0


Query: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60
           MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60

Query: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120
           YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH
Sbjct: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120

Query: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180
           STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLH
Sbjct: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180

Query: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240
           RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC
Sbjct: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240

Query: 241 PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLT 300
           PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLT
Sbjct: 241 PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLT 300

Query: 301 DLHDLLKQVISSQSTALAVTPGSGF 326
           DLHDLLKQVISSQSTALAVTPG+ +
Sbjct: 301 DLHDLLKQVISSQSTALAVTPGTSW 325

[Close]

BLAST of Pay0001684 vs. ExPASy TrEMBL
Match: A0A5A7SZ66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00840 PE=4 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 2.3e-185
Identity = 321/325 (98.77%), Postives = 323/325 (99.38%), Query Frame = 0


Query: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60
           MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60

Query: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120
           YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH
Sbjct: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120

Query: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180
           STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYE VRAALLH
Sbjct: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYEPVRAALLH 180

Query: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240
           RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC
Sbjct: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240

Query: 241 PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLT 300
           PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLT
Sbjct: 241 PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLT 300

Query: 301 DLHDLLKQVISSQSTALAVTPGSGF 326
           DLHDLLKQVISSQSTALAVTPG+ +
Sbjct: 301 DLHDLLKQVISSQSTALAVTPGTSW 325

[Close]

BLAST of Pay0001684 vs. ExPASy TrEMBL
Match: A0A5A7UVX4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006520 PE=4 SV=1)

HSP 1 Score: 644.8 bits (1662), Expect = 2.0e-181
Identity = 314/325 (96.62%), Postives = 321/325 (98.77%), Query Frame = 0


Query: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60
           MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAE+IQ
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAENIQ 60

Query: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120
           YIE+LEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK+LWDFLYTRFQSIGLAHYYQLH
Sbjct: 61  YIEKLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDFLYTRFQSIGLAHYYQLH 120

Query: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180
           STLVSLNQE+GQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYE VRAALLH
Sbjct: 121 STLVSLNQEVGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYEFVRAALLH 180

Query: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240
           RN LPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC
Sbjct: 181 RNSLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240

Query: 241 PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLT 300
           PTIEC+YCHKRGHILDNCPTRPPRPPGHSHKPKF HKAGSSSVVAAATSDITEPSSLQLT
Sbjct: 241 PTIECKYCHKRGHILDNCPTRPPRPPGHSHKPKFFHKAGSSSVVAAATSDITEPSSLQLT 300

Query: 301 DLHDLLKQVISSQSTALAVTPGSGF 326
           DLHDLLKQVISSQSTALAVTPG+ +
Sbjct: 301 DLHDLLKQVISSQSTALAVTPGTSW 325

[Close]

BLAST of Pay0001684 vs. ExPASy TrEMBL
Match: A0A5A7TXR0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00330 PE=4 SV=1)

HSP 1 Score: 604.4 bits (1557), Expect = 3.0e-169
Identity = 303/348 (87.07%), Postives = 312/348 (89.66%), Query Frame = 0


Query: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP----------- 60
           MEKN VARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP           
Sbjct: 1   MEKNYVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTFPMKNTSKNN 60

Query: 61  -----------IVHETSAEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK 120
                      IVHE + EDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFD FDSAK
Sbjct: 61  TEHNDANTSDIIVHEPTVEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDTFDSAK 120

Query: 121 ELWDFLYTRFQSIGLAHYYQLHSTLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHI 180
           ELW+FLYTRFQSIGLAHYYQLHSTLV+LNQE+GQSVNEYL T QPIWTQLDQAKISPDHI
Sbjct: 121 ELWNFLYTRFQSIGLAHYYQLHSTLVNLNQEVGQSVNEYLVTFQPIWTQLDQAKISPDHI 180

Query: 181 RLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHL 240
           RLIKVLMGLR EYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSL SDVALATTH+
Sbjct: 181 RLIKVLMGLRSEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLPSDVALATTHI 240

Query: 241 RQANETIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKA 300
           RQANET FCKNCKLHGHKFANCPTIECRYC+KRGHILDNCPTRPPRPP HSHK KFSHK 
Sbjct: 241 RQANETSFCKNCKLHGHKFANCPTIECRYCYKRGHILDNCPTRPPRPPSHSHKHKFSHKV 300

Query: 301 GSSSVVAAAT-SDITEPSSLQLTDLHDLLKQVISSQSTALAVTPGSGF 326
           GSSSVVAAAT SDITEPSSLQLTDLHDLLKQV+SSQSTALAVTPG+ +
Sbjct: 301 GSSSVVAAATSSDITEPSSLQLTDLHDLLKQVLSSQSTALAVTPGTSW 348

[Close]

BLAST of Pay0001684 vs. NCBI nr
Match: XP_008445037.1 (PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo])

HSP 1 Score: 688.7 bits (1776), Expect = 2.5e-194
Identity = 338/342 (98.83%), Postives = 341/342 (99.71%), Query Frame = 0


Query: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60
           MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60

Query: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120
           YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH
Sbjct: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120

Query: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180
           STLVSLNQE+GQSVNEYLATLQPIWTQL+QAKISPDHIRLIKVLMGLRPEYESVRAALLH
Sbjct: 121 STLVSLNQEVGQSVNEYLATLQPIWTQLEQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180

Query: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240
           RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC
Sbjct: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240

Query: 241 PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAAT-SDITEPSSLQL 300
           PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAAT SDITEPSSLQL
Sbjct: 241 PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSSDITEPSSLQL 300

Query: 301 TDLHDLLKQVISSQSTALAVTPGSGFSDGTSDWYGTEGGSII 342
           TDLHDLLKQVISSQSTALAVTPGSGFSDGTSDW+GTEGGSII
Sbjct: 301 TDLHDLLKQVISSQSTALAVTPGSGFSDGTSDWHGTEGGSII 342

[Close]

BLAST of Pay0001684 vs. NCBI nr
Match: KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 659.8 bits (1701), Expect = 1.2e-185
Identity = 322/325 (99.08%), Postives = 324/325 (99.69%), Query Frame = 0


Query: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60
           MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60

Query: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120
           YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH
Sbjct: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120

Query: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180
           STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLH
Sbjct: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180

Query: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240
           RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC
Sbjct: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240

Query: 241 PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLT 300
           PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLT
Sbjct: 241 PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLT 300

Query: 301 DLHDLLKQVISSQSTALAVTPGSGF 326
           DLHDLLKQVISSQSTALAVTPG+ +
Sbjct: 301 DLHDLLKQVISSQSTALAVTPGTSW 325

[Close]

BLAST of Pay0001684 vs. NCBI nr
Match: KAA0036574.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 657.9 bits (1696), Expect = 4.7e-185
Identity = 321/325 (98.77%), Postives = 323/325 (99.38%), Query Frame = 0


Query: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60
           MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60

Query: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120
           YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH
Sbjct: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120

Query: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180
           STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYE VRAALLH
Sbjct: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYEPVRAALLH 180

Query: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240
           RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC
Sbjct: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240

Query: 241 PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLT 300
           PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLT
Sbjct: 241 PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLT 300

Query: 301 DLHDLLKQVISSQSTALAVTPGSGF 326
           DLHDLLKQVISSQSTALAVTPG+ +
Sbjct: 301 DLHDLLKQVISSQSTALAVTPGTSW 325

[Close]

BLAST of Pay0001684 vs. NCBI nr
Match: KAA0058316.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 644.8 bits (1662), Expect = 4.1e-181
Identity = 314/325 (96.62%), Postives = 321/325 (98.77%), Query Frame = 0


Query: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60
           MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAE+IQ
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAENIQ 60

Query: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120
           YIE+LEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK+LWDFLYTRFQSIGLAHYYQLH
Sbjct: 61  YIEKLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDFLYTRFQSIGLAHYYQLH 120

Query: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180
           STLVSLNQE+GQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYE VRAALLH
Sbjct: 121 STLVSLNQEVGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYEFVRAALLH 180

Query: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240
           RN LPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC
Sbjct: 181 RNSLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240

Query: 241 PTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSDITEPSSLQLT 300
           PTIEC+YCHKRGHILDNCPTRPPRPPGHSHKPKF HKAGSSSVVAAATSDITEPSSLQLT
Sbjct: 241 PTIECKYCHKRGHILDNCPTRPPRPPGHSHKPKFFHKAGSSSVVAAATSDITEPSSLQLT 300

Query: 301 DLHDLLKQVISSQSTALAVTPGSGF 326
           DLHDLLKQVISSQSTALAVTPG+ +
Sbjct: 301 DLHDLLKQVISSQSTALAVTPGTSW 325

[Close]

BLAST of Pay0001684 vs. NCBI nr
Match: KAA0047794.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 604.4 bits (1557), Expect = 6.2e-169
Identity = 303/348 (87.07%), Postives = 312/348 (89.66%), Query Frame = 0


Query: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP----------- 60
           MEKN VARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP           
Sbjct: 1   MEKNYVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTFPMKNTSKNN 60

Query: 61  -----------IVHETSAEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK 120
                      IVHE + EDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFD FDSAK
Sbjct: 61  TEHNDANTSDIIVHEPTVEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDTFDSAK 120

Query: 121 ELWDFLYTRFQSIGLAHYYQLHSTLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHI 180
           ELW+FLYTRFQSIGLAHYYQLHSTLV+LNQE+GQSVNEYL T QPIWTQLDQAKISPDHI
Sbjct: 121 ELWNFLYTRFQSIGLAHYYQLHSTLVNLNQEVGQSVNEYLVTFQPIWTQLDQAKISPDHI 180

Query: 181 RLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHL 240
           RLIKVLMGLR EYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSL SDVALATTH+
Sbjct: 181 RLIKVLMGLRSEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLPSDVALATTHI 240

Query: 241 RQANETIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKA 300
           RQANET FCKNCKLHGHKFANCPTIECRYC+KRGHILDNCPTRPPRPP HSHK KFSHK 
Sbjct: 241 RQANETSFCKNCKLHGHKFANCPTIECRYCYKRGHILDNCPTRPPRPPSHSHKHKFSHKV 300

Query: 301 GSSSVVAAAT-SDITEPSSLQLTDLHDLLKQVISSQSTALAVTPGSGF 326
           GSSSVVAAAT SDITEPSSLQLTDLHDLLKQV+SSQSTALAVTPG+ +
Sbjct: 301 GSSSVVAAATSSDITEPSSLQLTDLHDLLKQVLSSQSTALAVTPGTSW 348

The following BLAST results are available for this feature:

BLAST of Pay0001684 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0001684 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBA1	1.2e-194	98.83	uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=...	[more]
A0A5D3DG18	6.0e-186	99.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SZ66	2.3e-185	98.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UVX4	2.0e-181	96.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TXR0	3.0e-169	87.07	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of Pay0001684 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445037.1	2.5e-194	98.83	PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]	[more]
KAA0043149.1	1.2e-185	99.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0036574.1	4.7e-185	98.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0058316.1	4.1e-181	96.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047794.1	6.2e-169	87.07	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0001684 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 226..242 e-value: 1.2 score: 10.8 coord: 244..260 e-value: 0.032 score: 20.4
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 14..39 e-value: 2.3E-8 score: 33.6
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 68..200 e-value: 1.2E-11 score: 44.5
None	No IPR available	GENE3D	4.10.60.10		coord: 211..264 e-value: 3.3E-7 score: 32.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..279
None	No IPR available	PANTHER	PTHR34222:SF43	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 10..278
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 10..278
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 217..262

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0001684.1	Pay0001684.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding