Pay0001676 (gene) Melon (Payzawat) v1

Overview


Name	Pay0001676
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Integrase catalytic domain-containing protein
Location	chr11: 18680840 .. 18681239 (-)
RNA-Seq Expression	Pay0001676
Synteny	Pay0001676

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGTCTAACCCCAATCTTCAATCTTCCTCCCCCAGCATCCCAGAAAATTCCTCTTCAACCATCAATCCCACTCCAATCCCACCTTCCGTCATTGCCCAATTAAAAACCACTATAGCTAGATCACTCTGACAGTACCAATCTAATCCTTGTATCTTATCTCCTCACCAAATCAAACTATACTTCCTAGAACCGTGCCTTTCTTCTAGACTTCACCGTGAAAAACAAAGTTGGTTTCATTGATGGAACTTTAACCTGCCCCACAGATGCTCTTCGAAATTCTTGGATCATTTGTAGCAGTATCGTCACCACCTGGATTCTAAACTCAGTTTCAAAGAAAATGGCTGCCAGTATTTGCTTTGCCAACTCTGCCCGAGAAATTTGGCTTGACTTCTAA

mRNA sequence

ATGGCTGAGTCTAACCCCAATCTTCAATCTTCCTCCCCCAGCATCCCAGAAAATTCCTCTTCAACCATCAATCCCACTCCAATCCCACCTTCCAACCGTGCCTTTCTTCTAGACTTCACCGTGAAAAACAAAGTTGGTTTCATTGATGGAACTTTAACCTGCCCCACAGATGCTCTTCGAAATTCTTGGATCATTTGTAGCAGTATCGTCACCACCTGGATTCTAAACTCAGTTTCAAAGAAAATGGCTGCCAGTATTTGCTTTGCCAACTCTGCCCGAGAAATTTGGCTTGACTTCTAA

Coding sequence (CDS)

ATGGCTGAGTCTAACCCCAATCTTCAATCTTCCTCCCCCAGCATCCCAGAAAATTCCTCTTCAACCATCAATCCCACTCCAATCCCACCTTCCAACCGTGCCTTTCTTCTAGACTTCACCGTGAAAAACAAAGTTGGTTTCATTGATGGAACTTTAACCTGCCCCACAGATGCTCTTCGAAATTCTTGGATCATTTGTAGCAGTATCGTCACCACCTGGATTCTAAACTCAGTTTCAAAGAAAATGGCTGCCAGTATTTGCTTTGCCAACTCTGCCCGAGAAATTTGGCTTGACTTCTAA

Protein sequence

MAESNPNLQSSSPSIPENSSSTINPTPIPPSNRAFLLDFTVKNKVGFIDGTLTCPTDALRNSWIICSSIVTTWILNSVSKKMAASICFANSAREIWLDF

Homology

[Close]

BLAST of Pay0001676 vs. ExPASy TrEMBL
Match: A0A5D3BXU2 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00100 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 65/114 (57.02%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 1   MAESNPNLQSSSPSIPENSSSTINPTPIPPS----------------------------- 60
           MAESNPNLQ SS SIPENSSS INPTP PPS                             
Sbjct: 1   MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES 60

Query: 61  -----NRAFLLDFTVKNKVGFIDGTLTCPTDALRNSWIICSSIVTTWILNSVSK 81
                N AFLL  TVK KV FID TLTC TDALR+SWIIC+SIVT WILNS+SK
Sbjct: 61  NYTSWNCAFLLGLTVKIKVYFIDVTLTCLTDALRSSWIICNSIVTAWILNSISK 114

[Close]

BLAST of Pay0001676 vs. ExPASy TrEMBL
Match: A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.2e-15
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 17  ENSSSTINPTPIPPSN-----RAFLLDFTVKNKVGFIDGTLTCPTDALRNSWIICSSIVT 76
           +N+S  +   P+   N     R+ L+  TVKNKVGF+DG++  PT  L +SWIIC+++V 
Sbjct: 34  DNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVGFVDGSIVRPTGDLLHSWIICNNVVI 93

Query: 77  TWILNSVSKKMAASICFANSAREIWLD 99
           +WILNS+SK+++ASI F++SAREIWLD
Sbjct: 94  SWILNSLSKEISASILFSDSAREIWLD 120

[Close]

BLAST of Pay0001676 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 36/67 (53.73%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 32  NRAFLLDFTVKNKVGFIDGTLTCPTDALRNSWIICSSIVTTWILNSVSKKMAASICFANS 91
           +R+ ++  TVKNK+GF+DG+++ PTD   +SWIIC+++V +WI NS+SKK++AS+ F++S
Sbjct: 55  SRSIVIALTVKNKIGFVDGSISRPTDGRLHSWIICNNVVISWIFNSLSKKISASVLFSDS 114

Query: 92  AREIWLD 99
           A EIWLD
Sbjct: 115 AHEIWLD 121

[Close]

BLAST of Pay0001676 vs. ExPASy TrEMBL
Match: A0A6J1CMF8 (uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012468 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.2e-13
Identity = 36/79 (45.57%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 20  SSTINPTPIPPSNRAFLLDFTVKNKVGFIDGTLTCPTDALRNSWIICSSIVTTWILNSVS 79
           S  +N       +R+ ++  TVKNK+GF+DG+++ P+ A  NSW IC+++V  W+LNS+S
Sbjct: 57  SDLLNENNYTSWSRSMIIALTVKNKIGFVDGSISRPSGAQINSWKICNNVVIAWLLNSLS 116

Query: 80  KKMAASICFANSAREIWLD 99
           K+++AS+ F++SAR+IWLD
Sbjct: 117 KEISASVLFSDSARDIWLD 135

[Close]

BLAST of Pay0001676 vs. ExPASy TrEMBL
Match: A0A6J1D5E3 (uncharacterized protein LOC111017196 OS=Momordica charantia OX=3673 GN=LOC111017196 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 40 TVKNKVGFIDGTLTCPTDALRNSWIICSSIVTTWILNSVSKKMAASICFANSAREIWLD 99
          TVKNK G +DG++  P D   NSWIIC+++V  WILNS+SK+++AS+ FA+SAREIWLD
Sbjct: 6  TVKNKFGXVDGSIPRPDDEHLNSWIICNNVVIAWILNSLSKEISASVLFADSAREIWLD 64

[Close]

BLAST of Pay0001676 vs. NCBI nr
Match: TYK04347.1 (uncharacterized protein E5676_scaffold675G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 4.5e-19
Identity = 65/114 (57.02%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 1   MAESNPNLQSSSPSIPENSSSTINPTPIPPS----------------------------- 60
           MAESNPNLQ SS SIPENSSS INPTP PPS                             
Sbjct: 1   MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES 60

Query: 61  -----NRAFLLDFTVKNKVGFIDGTLTCPTDALRNSWIICSSIVTTWILNSVSK 81
                N AFLL  TVK KV FID TLTC TDALR+SWIIC+SIVT WILNS+SK
Sbjct: 61  NYTSWNCAFLLGLTVKIKVYFIDVTLTCLTDALRSSWIICNSIVTAWILNSISK 114

[Close]

BLAST of Pay0001676 vs. NCBI nr
Match: XP_038874906.1 (uncharacterized protein LOC120067409 [Benincasa hispida])

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-16
Identity = 43/67 (64.18%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 32  NRAFLLDFTVKNKVGFIDGTLTCPTDALRNSWIICSSIVTTWILNSVSKKMAASICFANS 91
           +++  L FTVKNK+GFIDGTL  P   L+NSWIIC+S+VTTWI N++SKK+AAS+ F++S
Sbjct: 68  SQSMTLSFTVKNKMGFIDGTLPKPIGDLQNSWIICNSVVTTWIFNALSKKIAASVNFSDS 127

Query: 92  AREIWLD 99
            REIWLD
Sbjct: 128 TREIWLD 134

[Close]

BLAST of Pay0001676 vs. NCBI nr
Match: XP_022152756.1 (uncharacterized protein LOC111020399 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-14
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 17  ENSSSTINPTPIPPSN-----RAFLLDFTVKNKVGFIDGTLTCPTDALRNSWIICSSIVT 76
           +N+S  +   P+   N     R+ L+  TVKNKVGF+DG++  PT  L +SWIIC+++V 
Sbjct: 34  DNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVGFVDGSIVRPTGDLLHSWIICNNVVI 93

Query: 77  TWILNSVSKKMAASICFANSAREIWLD 99
           +WILNS+SK+++ASI F++SAREIWLD
Sbjct: 94  SWILNSLSKEISASILFSDSAREIWLD 120

[Close]

BLAST of Pay0001676 vs. NCBI nr
Match: XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 36/67 (53.73%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 32  NRAFLLDFTVKNKVGFIDGTLTCPTDALRNSWIICSSIVTTWILNSVSKKMAASICFANS 91
           +R+ ++  TVKNK+GF+DG+++ PTD   +SWIIC+++V +WI NS+SKK++AS+ F++S
Sbjct: 55  SRSIVIALTVKNKIGFVDGSISRPTDGRLHSWIICNNVVISWIFNSLSKKISASVLFSDS 114

Query: 92  AREIWLD 99
           A EIWLD
Sbjct: 115 AHEIWLD 121

[Close]

BLAST of Pay0001676 vs. NCBI nr
Match: XP_022142327.1 (uncharacterized protein LOC111012468 [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 36/79 (45.57%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 20  SSTINPTPIPPSNRAFLLDFTVKNKVGFIDGTLTCPTDALRNSWIICSSIVTTWILNSVS 79
           S  +N       +R+ ++  TVKNK+GF+DG+++ P+ A  NSW IC+++V  W+LNS+S
Sbjct: 57  SDLLNENNYTSWSRSMIIALTVKNKIGFVDGSISRPSGAQINSWKICNNVVIAWLLNSLS 116

Query: 80  KKMAASICFANSAREIWLD 99
           K+++AS+ F++SAR+IWLD
Sbjct: 117 KEISASVLFSDSARDIWLD 135

[Close]

BLAST of Pay0001676 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-06
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 33  RAFLLDFTVKNKVGFIDGTLTCPT--DALRNSWIICSSIVTTWILNSVSKKMAASICFAN 92
           R+FL    V  K GFIDGTL  P     L   W  C+++V  W++NS++ K+  S+ +A 
Sbjct: 50  RSFL---RVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAE 109

Query: 93  SAREIWLD 99
           +A ++W D
Sbjct: 110 TAHKMWED 114

The following BLAST results are available for this feature:

BLAST of Pay0001676 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0001676 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BXU2	2.2e-19	57.02	Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1DIP8	7.2e-15	50.57	uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DNP7	1.6e-14	53.73	uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CMF8	5.2e-13	45.57	uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1D5E3	1.5e-12	61.02	uncharacterized protein LOC111017196 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Pay0001676 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04347.1	4.5e-19	57.02	uncharacterized protein E5676_scaffold675G00100 [Cucumis melo var. makuwa]	[more]
XP_038874906.1	2.7e-16	64.18	uncharacterized protein LOC120067409 [Benincasa hispida]	[more]
XP_022152756.1	1.5e-14	50.57	uncharacterized protein LOC111020399 [Momordica charantia]	[more]
XP_022154919.1	3.3e-14	53.73	uncharacterized protein LOC111022065 [Momordica charantia]	[more]
XP_022142327.1	1.1e-12	45.57	uncharacterized protein LOC111012468 [Momordica charantia]	[more]

BLAST of Pay0001676 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	1.6e-06	38.24	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR37610:SF13	CATALYTIC REGION, PUTATIVE-RELATED	coord: 32..96
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 32..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0001676.1	Pay0001676.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0106310	protein serine kinase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0004712	protein serine/threonine/tyrosine kinase activity