Pay0001660 (gene) Melon (Payzawat) v1

Overview


Name	Pay0001660
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Location	chr07: 11557187 .. 11559415 (+)
RNA-Seq Expression	Pay0001660
Synteny	Pay0001660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAGTCGAGCTGAAAGAGCTGAAGGTACAACTGCAGGAGTTGCTGGACAAGGGTTTCATCTGGCCCAATGTGTCACCTTGGGGAGCCCTAGTGTTGTTTGTGAAGAAGAAGGACGGGTCGATGCGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTTAAGAACCGCTACCCTTTGCCCAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTGTCTTTTCTAAGATCGACCTGTGATCGGGCTATCACCAGTTGAGGATCAGGGACAACGATATTCCTAAGACGGCCTTCCGTTCAAGATACGGACATTACGAGTTCATTGTGATGTCTTTTGGTTTGACTAATGCTCCCGCGGTATTCATGGACTTGATGAACAGAGTGTTTAAGGATTTCTTGGACTCGTTCGTCATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCATTTGCACCAGGTTTTGGAGACCCTTCGATCCAATAAGTTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGACTTTCCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTCTATGGACCCAACAAAGATCGAAGCAGTTACCAATTGGCCTCGACCGTCTACGGTTAGCGAGATTCGTAGTTTCCTGGGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTTTCACGTATAGCCAGTCCCTTGACCCAGTTGACCAGGAAGGGAACTCCTTTCGTTTGGAGCCCAACTTGCGAGAGTAGCTTCTAGGAGCTTAAGCAGAAGCTTGTGACTGCACCAATCCTGACAGTGCCAGATGGATCAGGGAGCTTTGTGATTTACAGTGATGCCTCCAAAAAGGGACTGGGCTGTGTTCTGATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTACCTTACCCACGACCTGGAGTTGGCAGCAGTGGTTTTTGCACTGAAGGTATGGAGGCACTACCTGTACGGTGAGAAGATACAGATTTTCACTGACTATAAGAGTCTGAAGTACTTCTTCACCCAGAAGGAGTTGAACATGAGGCAGAGGAGGTGACTCGAGTTAGTGAAAGACTATGACTGTGAGATTCTCTACCACCCAGGTAAGGCAAACGTAGTAGCTGACGTGCTGAGTAGGAAGGTTGCACATTCAGCAGCACTTATCATCAAGCAAGCTCCCTTACGCAGAGATTTTGAGAGAGTTGAGATTGCAGTCTCAGTATGAGAGGTTACCTCACTGTTGGCTCAGTTGTCAGTGCAGCCGACCTTGAGGCAGAGGATTATTGTTGCTCAGCTAAATGATCCTTACCTGGTCGAGAAGCATCGTTTGGTAGACTTCAGCACAGCTTGCTTTGGACACGAGGTTAGACTTCAGCACAGCTTTTCATCCTCAGACTGATGGTCAAACAGAGAGGTTGAACCAGATTTTGGAGGACATGCTGCGAGTCTGTGTATTAGAGTTTTCAAGGAGTTAGGACTCCCATTTGCATTTGATGGAGTTCGCCTATAATAACAGCTACCAGGCTACTATCGGCATGCACCATTTAAGGCTCTGTATGGTAAGTGTTGTAGATCTTCAGTCTGCTGGGGCGAGGTTGGTGATCAGAGGATGATATGCCCCGAGTTAGTTCAGGCCATCAACGCAGCCATACAGAAGATTCGAGCTCGTATGTTGACGGCACAGAGCAGACAGAAGATTTATGCTGATGTGCGGTGTAAGGATCTCGAGTTTGAGGTAGGAGACATGGTCTTTCTGAAGGTAGCACCTATGAAGGGTGTTCTGAGGTTCGAGAAGAAGGGGAAGCTAAGTCCACGTTTCGTAGGACCGTTTGAGATACTGGAGCGGATTGGCCTTGTAGCTTATCGCTTGGCGTTGCCCCCATCTTTTTCTGCAGTGCATAATGTATTCCATGTCTCCATGCTGAGGAAGTATGTCGCAGATCCGACGCATGTAGTGGAATTCGAGCCATTGCAAATTAGTGAGAACATGAGCTACGAGGAGCAACCTGTCGAGATCTTGGCAAGGAAAGTCAAGAAGCTCCGTAGTCGAGAAATTTCACTGGTCAAAGTTCTTTGGCGAAACCATGAAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGATATGAGAGCTCAGTACCCCGAGCTGCTCAAGGATTAG

mRNA sequence

ATGGCTCCAGTCGAGCTGAAAGAGCTGAAGAGCAGACAGAAGATTTATGCTGATGTGCGGTGTAAGGATCTCGAGTTTGAGGTAGGAGACATGGTCTTTCTGAAGGTAGCACCTATGAAGGGTGTTCTGAGGTTCGAGAAGAAGGGGAAGCTAAGTCCACGTTTCGTAGGACCGTTTGAGATACTGGAGCGGATTGGCCTTGTAGCTTATCGCTTGGCGTTGCCCCCATCTTTTTCTGCAGTGCATAATGTATTCCATGTCTCCATGCTGAGGAAGTATGTCGCAGATCCGACGCATGTAGTGGAATTCGAGCCATTGCAAATTAGTGAGAACATGAGCTACGAGGAGCAACCTGTCGAGATCTTGGCAAGGAAAGTCAAGAAGCTCCGTAGTCGAGAAATTTCACTGGTCAAAGTTCTTTGGCGAAACCATGAAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGATATGAGAGCTCAGTACCCCGAGCTGCTCAAGGATTAG

Coding sequence (CDS)

ATGGCTCCAGTCGAGCTGAAAGAGCTGAAGAGCAGACAGAAGATTTATGCTGATGTGCGGTGTAAGGATCTCGAGTTTGAGGTAGGAGACATGGTCTTTCTGAAGGTAGCACCTATGAAGGGTGTTCTGAGGTTCGAGAAGAAGGGGAAGCTAAGTCCACGTTTCGTAGGACCGTTTGAGATACTGGAGCGGATTGGCCTTGTAGCTTATCGCTTGGCGTTGCCCCCATCTTTTTCTGCAGTGCATAATGTATTCCATGTCTCCATGCTGAGGAAGTATGTCGCAGATCCGACGCATGTAGTGGAATTCGAGCCATTGCAAATTAGTGAGAACATGAGCTACGAGGAGCAACCTGTCGAGATCTTGGCAAGGAAAGTCAAGAAGCTCCGTAGTCGAGAAATTTCACTGGTCAAAGTTCTTTGGCGAAACCATGAAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGATATGAGAGCTCAGTACCCCGAGCTGCTCAAGGATTAG

Protein sequence

MAPVELKELKSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD

Homology

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BLAST of Pay0001660 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.6e-06
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 12   RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAY 71
            + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ G   Y
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNY 1236

Query: 72   RLALPPSFSAV-HNVFHVSMLRKY 94
             L LP S   +  + FHVS L KY
Sbjct: 1237 ELDLPDSIKHMFSSTFHVSHLEKY 1257

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BLAST of Pay0001660 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.6e-06
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 12   RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAY 71
            + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ G   Y
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNY 1236

Query: 72   RLALPPSFSAV-HNVFHVSMLRKY 94
             L LP S   +  + FHVS L KY
Sbjct: 1237 ELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Pay0001660 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.6e-06
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 12   RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAY 71
            + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ G   Y
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNY 1236

Query: 72   RLALPPSFSAV-HNVFHVSMLRKY 94
             L LP S   +  + FHVS L KY
Sbjct: 1237 ELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Pay0001660 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.6e-06
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 12   RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAY 71
            + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ G   Y
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNY 1236

Query: 72   RLALPPSFSAV-HNVFHVSMLRKY 94
             L LP S   +  + FHVS L KY
Sbjct: 1237 ELDLPDSIKHMFSSTFHVSHLEKY 1257

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BLAST of Pay0001660 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.6e-06
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 12   RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAY 71
            + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ G   Y
Sbjct: 1177 KMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNY 1236

Query: 72   RLALPPSFSAV-HNVFHVSMLRKY 94
             L LP S   +  + FHVS L KY
Sbjct: 1237 ELDLPDSIKHMFSSTFHVSHLEKY 1257

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BLAST of Pay0001660 vs. ExPASy TrEMBL
Match: A0A5A7VAJ0 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001600 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.6e-75
Identity = 149/158 (94.30%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 10  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVA 69
           +SRQK YADVR KDLEFEVGDMVFLKVAPMKGVLRFEKK KLSPRFVGPFEILERIGLVA
Sbjct: 344 QSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKRKLSPRFVGPFEILERIGLVA 403

Query: 70  YRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISENMSYEEQPVEILARKVKKL 129
           YRLALPPSFS VHNVFHVSMLRKYVADPTHVVEFEPLQISENMSY+EQPVEILAR+VKKL
Sbjct: 404 YRLALPPSFSTVHNVFHVSMLRKYVADPTHVVEFEPLQISENMSYKEQPVEILAREVKKL 463

Query: 130 RSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD 168
           RSREISLVKVLWRNH VEEATWEREEDMRAQYPEL KD
Sbjct: 464 RSREISLVKVLWRNHGVEEATWEREEDMRAQYPELFKD 501

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BLAST of Pay0001660 vs. ExPASy TrEMBL
Match: A0A1S4DUK4 (uncharacterized protein LOC107990499 OS=Cucumis melo OX=3656 GN=LOC107990499 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.0e-74
Identity = 146/167 (87.43%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MAPVELKELKSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 60
           MAP ELKELKS+QK YADVR KDLEFEVGDMVFLKVAPMKGVLRFE KGKLSPRFVGPFE
Sbjct: 1   MAPTELKELKSKQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEMKGKLSPRFVGPFE 60

Query: 61  ILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISENMSYEEQPVE 120
           ILERIG VAY LALPPSFSAVH+VFHVSMLR+YVADPTHVV+FEPL+ISEN+SYEEQPVE
Sbjct: 61  ILERIGPVAYCLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLRISENLSYEEQPVE 120

Query: 121 ILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD 168
           ILA++VKKLRSREISLVKVLWRNH VEEATWEREEDM+  YPE  +D
Sbjct: 121 ILAKEVKKLRSREISLVKVLWRNHGVEEATWEREEDMQVLYPEQFED 167

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BLAST of Pay0001660 vs. ExPASy TrEMBL
Match: A0A5A7TQ85 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00410 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.2e-73
Identity = 145/158 (91.77%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 10   KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVA 69
            KSRQK YADVR KDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIG VA
Sbjct: 1216 KSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVA 1275

Query: 70   YRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISENMSYEEQPVEILARKVKKL 129
            YRLALPPSFSAVH+VFHVSMLRKYVAD THVV+FEPLQISEN+SYEEQPVEI ARK+KKL
Sbjct: 1276 YRLALPPSFSAVHDVFHVSMLRKYVADQTHVVDFEPLQISENLSYEEQPVEIFARKIKKL 1335

Query: 130  RSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD 168
            RSREISLVKVLWRNH VEEATWEREEDMRAQ+PEL +D
Sbjct: 1336 RSREISLVKVLWRNHGVEEATWEREEDMRAQHPELFED 1373

[Close]

BLAST of Pay0001660 vs. ExPASy TrEMBL
Match: A0A5D3C081 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5117G00010 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.4e-73
Identity = 142/158 (89.87%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 10  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVA 69
           +SRQK YAD++ KDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIG VA
Sbjct: 514 QSRQKSYADIQRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVA 573

Query: 70  YRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISENMSYEEQPVEILARKVKKL 129
           YRLALPPSF AVH+VFHVSM+R+YVADPTHVV+FEPLQISEN+SYEEQPVEILAR+VKKL
Sbjct: 574 YRLALPPSFFAVHDVFHVSMMRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKL 633

Query: 130 RSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD 168
           RSREISLVKV+WRNH VEEATWEREEDMRAQYPEL KD
Sbjct: 634 RSREISLVKVIWRNHGVEEATWEREEDMRAQYPELFKD 671

[Close]

BLAST of Pay0001660 vs. ExPASy TrEMBL
Match: A0A5D3E6D2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold340G00240 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.3e-72
Identity = 144/158 (91.14%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 10  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVA 69
           +SRQK YADVR KDLEFEV DMVFLKVAPMKGVLRFEKKGKLSPRF+GPFEILERIG VA
Sbjct: 429 QSRQKSYADVRRKDLEFEVEDMVFLKVAPMKGVLRFEKKGKLSPRFIGPFEILERIGPVA 488

Query: 70  YRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISENMSYEEQPVEILARKVKKL 129
           YRLAL PSFSAVH+VFHVSMLR+YVADPTHVV+FEPLQISEN+SYEEQPVEILARKVKKL
Sbjct: 489 YRLALHPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILARKVKKL 548

Query: 130 RSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD 168
           RSREISLVKVLWRNH VEEATWEREEDMRAQYPEL  D
Sbjct: 549 RSREISLVKVLWRNHGVEEATWEREEDMRAQYPELFAD 586

[Close]

BLAST of Pay0001660 vs. NCBI nr
Match: KAA0064254.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK18623.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.0 bits (746), Expect = 3.3e-75
Identity = 149/158 (94.30%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 10  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVA 69
           +SRQK YADVR KDLEFEVGDMVFLKVAPMKGVLRFEKK KLSPRFVGPFEILERIGLVA
Sbjct: 344 QSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKRKLSPRFVGPFEILERIGLVA 403

Query: 70  YRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISENMSYEEQPVEILARKVKKL 129
           YRLALPPSFS VHNVFHVSMLRKYVADPTHVVEFEPLQISENMSY+EQPVEILAR+VKKL
Sbjct: 404 YRLALPPSFSTVHNVFHVSMLRKYVADPTHVVEFEPLQISENMSYKEQPVEILAREVKKL 463

Query: 130 RSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD 168
           RSREISLVKVLWRNH VEEATWEREEDMRAQYPEL KD
Sbjct: 464 RSREISLVKVLWRNHGVEEATWEREEDMRAQYPELFKD 501

[Close]

BLAST of Pay0001660 vs. NCBI nr
Match: XP_016899400.1 (PREDICTED: uncharacterized protein LOC107990499 [Cucumis melo])

HSP 1 Score: 287.3 bits (734), Expect = 8.2e-74
Identity = 146/167 (87.43%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MAPVELKELKSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 60
           MAP ELKELKS+QK YADVR KDLEFEVGDMVFLKVAPMKGVLRFE KGKLSPRFVGPFE
Sbjct: 1   MAPTELKELKSKQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEMKGKLSPRFVGPFE 60

Query: 61  ILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISENMSYEEQPVE 120
           ILERIG VAY LALPPSFSAVH+VFHVSMLR+YVADPTHVV+FEPL+ISEN+SYEEQPVE
Sbjct: 61  ILERIGPVAYCLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLRISENLSYEEQPVE 120

Query: 121 ILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD 168
           ILA++VKKLRSREISLVKVLWRNH VEEATWEREEDM+  YPE  +D
Sbjct: 121 ILAKEVKKLRSREISLVKVLWRNHGVEEATWEREEDMQVLYPEQFED 167

[Close]

BLAST of Pay0001660 vs. NCBI nr
Match: KAA0045284.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.4e-73
Identity = 145/158 (91.77%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 10   KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVA 69
            KSRQK YADVR KDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIG VA
Sbjct: 1216 KSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVA 1275

Query: 70   YRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISENMSYEEQPVEILARKVKKL 129
            YRLALPPSFSAVH+VFHVSMLRKYVAD THVV+FEPLQISEN+SYEEQPVEI ARK+KKL
Sbjct: 1276 YRLALPPSFSAVHDVFHVSMLRKYVADQTHVVDFEPLQISENLSYEEQPVEIFARKIKKL 1335

Query: 130  RSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD 168
            RSREISLVKVLWRNH VEEATWEREEDMRAQ+PEL +D
Sbjct: 1336 RSREISLVKVLWRNHGVEEATWEREEDMRAQHPELFED 1373

[Close]

BLAST of Pay0001660 vs. NCBI nr
Match: TYK04678.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 284.3 bits (726), Expect = 7.0e-73
Identity = 142/158 (89.87%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 10  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVA 69
           +SRQK YAD++ KDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIG VA
Sbjct: 514 QSRQKSYADIQRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVA 573

Query: 70  YRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISENMSYEEQPVEILARKVKKL 129
           YRLALPPSF AVH+VFHVSM+R+YVADPTHVV+FEPLQISEN+SYEEQPVEILAR+VKKL
Sbjct: 574 YRLALPPSFFAVHDVFHVSMMRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKL 633

Query: 130 RSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD 168
           RSREISLVKV+WRNH VEEATWEREEDMRAQYPEL KD
Sbjct: 634 RSREISLVKVIWRNHGVEEATWEREEDMRAQYPELFKD 671

[Close]

BLAST of Pay0001660 vs. NCBI nr
Match: KAA0032361.1 (pol protein [Cucumis melo var. makuwa] >TYK31633.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.3 bits (721), Expect = 2.6e-72
Identity = 144/158 (91.14%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 10  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVA 69
           +SRQK YADVR KDLEFEV DMVFLKVAPMKGVLRFEKKGKLSPRF+GPFEILERIG VA
Sbjct: 429 QSRQKSYADVRRKDLEFEVEDMVFLKVAPMKGVLRFEKKGKLSPRFIGPFEILERIGPVA 488

Query: 70  YRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISENMSYEEQPVEILARKVKKL 129
           YRLAL PSFSAVH+VFHVSMLR+YVADPTHVV+FEPLQISEN+SYEEQPVEILARKVKKL
Sbjct: 489 YRLALHPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILARKVKKL 548

Query: 130 RSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD 168
           RSREISLVKVLWRNH VEEATWEREEDMRAQYPEL  D
Sbjct: 549 RSREISLVKVLWRNHGVEEATWEREEDMRAQYPELFAD 586

[Close]

BLAST of Pay0001660 vs. TAIR 10
Match: AT1G42190.1 (GAG/POL/ENV polyprotein )

HSP 1 Score: 41.6 bits (96), Expect = 7.3e-04
Identity = 20/43 (46.51%), Postives = 25/43 (58.14%), Query Frame = 0


Query: 70  YRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISENM 113
           Y+L LP    A H VFHVSMLRK +    +V+   P  + ENM
Sbjct: 2   YKLDLPTLMDAFHKVFHVSMLRKCITHQENVISEPPPDLLENM 44

The following BLAST results are available for this feature:

BLAST of Pay0001660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	7.6e-06	39.29	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	7.6e-06	39.29	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	7.6e-06	39.29	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	7.6e-06	39.29	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	7.6e-06	39.29	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Pay0001660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAJ0	1.6e-75	94.30	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S4DUK4	4.0e-74	87.43	uncharacterized protein LOC107990499 OS=Cucumis melo OX=3656 GN=LOC107990499 PE=...	[more]
A0A5A7TQ85	1.2e-73	91.77	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]
A0A5D3C081	3.4e-73	89.87	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5117G00010 P...	[more]
A0A5D3E6D2	1.3e-72	91.14	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold340G00240 PE...	[more]

BLAST of Pay0001660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064254.1	3.3e-75	94.30	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK18623.1 D...	[more]
XP_016899400.1	8.2e-74	87.43	PREDICTED: uncharacterized protein LOC107990499 [Cucumis melo]	[more]
KAA0045284.1	2.4e-73	91.77	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04678.1	7.0e-73	89.87	pol protein [Cucumis melo var. makuwa]	[more]
KAA0032361.1	2.6e-72	91.14	pol protein [Cucumis melo var. makuwa] >TYK31633.1 pol protein [Cucumis melo var...	[more]

BLAST of Pay0001660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G42190.1	7.3e-04	46.51	GAG/POL/ENV polyprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148:SF21	DOMAIN PROTEIN, PUTATIVE-RELATED	coord: 10..161
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 10..161
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 80..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0001660.1	Pay0001660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding