Pay0001643 (gene) Melon (Payzawat) v1

Overview


Name	Pay0001643
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	SWIM-type domain-containing protein
Location	chr11: 22865369 .. 22866956 (-)
RNA-Seq Expression	Pay0001643
Synteny	Pay0001643

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCTTTGAATGGTGAAGCAAAAGAATCTTATGCCTTGATTCCAAACTTTTTTATGAAACTAAAAGAAATTAACCCAGGTATGTTTTTATTCTTACAATTTATATATCATCAATCAAGCTTTTAATGATATGGTCTATCACTGATAAGTTCTATCAGTGATAGGCCTTATAGTAAATGAGCATATCATCAGACGACTGGTGTTATGGTGGTTTACTATAGGGTCTATCAGTGATAAACCATATCAGTGACAGACCTATAGTAAAAGAACATGTTATTTGTTTTTGATGTATATGTAGATATATATATTAATATTTTTTTTTATTTCAGGTTCATTCACTGCTTATGAAACTGATACAGAGGGTCATTTTAAGTACTGTTTTATGGCTATTGGAGCATGCATTGAAGGATGGAAATATTGTAGGCCCAACATATCAGTTGACGATACATTTTTGAAATCTAAATATGGTGGAACTCTTTTAACAGCCTCAACAATTGATGGTAATAATCAATTTTTTCCATTGGCCTTTAGTATTGTAGATTCTGAAAATGATGCATCTTGGAGATGGTTTTTTTGAGAATATAAAGAATAGTTTAGGGGGTCAGGAAGATTTAGTTGTAATATCTGATCGACATTTAAGTATCCCAAAAAGTGTTCATAATTTTTTTCCAAATGCTGAATATTGCGTTTGTTTGCAACACCTTCTAAAAAGTTTGAAGTTGATATATAAGGACCCTTAATTGATAAACTCTTTTTTAGATGTGGAAAAGCATATACAGTTATTGATTTTGAGACTAATATGAGATGGATGGAGTCTATGTATCCTAGTATACGAGACTATCTTAGTAAGGTTAGTTTTGAAAAGTGGGCTCGAGCATACTGTACAAGGAAAATATATCAAATGATGACTACAAACATTTTAGAAAACTTAAATGTAATTCTAAAAGAATTTAGAGATTTGCATGTTGCAGCATTACTCGATTCTATCAGACAAATACTTCAAAATTGGTTTTATGATTGGAGAAAAGTTGCATGTTGTATGAGAATTGTTTTAACTAGTTGGGCTGAGGGAGAATTACGAATACAACATCAAAACTCAAGAAGCTTCACAGTAAGTTTTTTTGTTTCAATGTTTATTTATTTAATTAGAGGGTAATGTAACAAGATCTATCAATGATAGACTCTGTCGCTGATAGATTCTTATTAGTGATTGTCTACATCAGCGATAGATTCTATCAGTGATAAACCATATATGTTGTGACATTTTTTTCTTCAGGTTAATGCTATTAATGATGTTGAATTTCAAGTGATTGATGGAAGAAAACAATTTATTGTACGGTTAGATTATAAATCATGTACCTATCACGTTTGGGATCTTGATGAAATTCCATGTGCCCACGCTCTTGCTGTTCTTCATGGACGTAATATAAATACTTACTCTTTTGTTTCCAAGTAATTTTTGTCAAGTACTTTGATTTCAACTTATACTGGATCAGTTCGTCCGGTTGGGAACCATGCTAATTGGAAGTCTATTGGGATTGAGAATAACATACTACCTCCAACTTTCAAGCGTCGAGCAGGATGA

mRNA sequence

ATGAATTCTTTGAATGGTGAAGCAAAAGAATCTTATGCCTTGATTCCAAACTTTTTTATGAAACTAAAAGAAATTAACCCAGGTTCATTCACTGCTTATGAAACTGATACAGAGGGTCATTTTAAGTACTGTTTTATGGCTATTGGAGCATGCATTGAAGGATGGAAATATTGTAGGCCCAACATATCAGTTGACGATACATTTTTGAAATCTAAATATGGTGGAACTCTTTTAACAGCCTCAACAATTGATGTTCGTCCGGTTGGGAACCATGCTAATTGGAAGTCTATTGGGATTGAGAATAACATACTACCTCCAACTTTCAAGCGTCGAGCAGGATGA

Coding sequence (CDS)

ATGAATTCTTTGAATGGTGAAGCAAAAGAATCTTATGCCTTGATTCCAAACTTTTTTATGAAACTAAAAGAAATTAACCCAGGTTCATTCACTGCTTATGAAACTGATACAGAGGGTCATTTTAAGTACTGTTTTATGGCTATTGGAGCATGCATTGAAGGATGGAAATATTGTAGGCCCAACATATCAGTTGACGATACATTTTTGAAATCTAAATATGGTGGAACTCTTTTAACAGCCTCAACAATTGATGTTCGTCCGGTTGGGAACCATGCTAATTGGAAGTCTATTGGGATTGAGAATAACATACTACCTCCAACTTTCAAGCGTCGAGCAGGATGA

Protein sequence

MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRPNISVDDTFLKSKYGGTLLTASTIDVRPVGNHANWKSIGIENNILPPTFKRRAG

Homology

[Close]

BLAST of Pay0001643 vs. ExPASy TrEMBL
Match: A0A1S4E145 (uncharacterized protein LOC107991486 OS=Cucumis melo OX=3656 GN=LOC107991486 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 5.3e-62
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 60
           MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP
Sbjct: 1   MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 60

Query: 61  NISVDDTFLKSKYGGTLLTASTIDVRPVGNHANWKSIGIENNILPPTFKRRAG 114
           NISVDDTFLKSKYGGTLLTASTIDVRPVGNHANWKSIGIENNILPPTFKRRAG
Sbjct: 61  NISVDDTFLKSKYGGTLLTASTIDVRPVGNHANWKSIGIENNILPPTFKRRAG 113

[Close]

BLAST of Pay0001643 vs. ExPASy TrEMBL
Match: A0A5D3CRP1 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00250 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.8e-44
Identity = 112/253 (44.27%), Postives = 113/253 (44.66%), Query Frame = 0


Query: 1   MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 60
           MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP
Sbjct: 249 MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 308

Query: 61  NISVDDTFLKSKYGGTLLTASTID------------------------------------ 114
           NISVDDTFLKSKYGGTLLTASTID                                    
Sbjct: 309 NISVDDTFLKSKYGGTLLTASTIDDYLSKVSFEKWARAYCTRKIYQMMTTNILENLNVIL 368

[Close]

BLAST of Pay0001643 vs. ExPASy TrEMBL
Match: A0A5A7UI69 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold406G00610 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.5e-43
Identity = 98/166 (59.04%), Postives = 103/166 (62.05%), Query Frame = 0


Query: 1   MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 60
           MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETD EGHFKYCFMAIGACIEGWKYCRP
Sbjct: 286 MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDIEGHFKYCFMAIGACIEGWKYCRP 345

Query: 61  NISVDDT-------FLKSKYGGT------------------------------------- 114
           NISVD         +++S Y  T                                     
Sbjct: 346 NISVDVVDFETNMRWMESMYPSTRDYLSKVNAINDVEFQVIDGRKQFIVRLDCKSCTCRV 405

[Close]

BLAST of Pay0001643 vs. ExPASy TrEMBL
Match: A0A5D3C8T8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00080 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 96/166 (57.83%), Postives = 102/166 (61.45%), Query Frame = 0


Query: 1   MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 60
           MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP
Sbjct: 286 MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 345

Query: 61  NISVDDT-------FLKSKYGGTLLTASTID----------------------------- 114
           NISVD         +++S Y       S ++                             
Sbjct: 346 NISVDVVDFETNMRWMESMYPSIRDYLSKVNAINDVEFQVIDGRKQFIVRLDCKSCTCRV 405

[Close]

BLAST of Pay0001643 vs. ExPASy TrEMBL
Match: A0A5D3DFS5 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00020 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 96/166 (57.83%), Postives = 102/166 (61.45%), Query Frame = 0


Query: 1   MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 60
           MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP
Sbjct: 286 MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 345

Query: 61  NISVDDT-------FLKSKYGGTLLTASTID----------------------------- 114
           NISVD         +++S Y       S ++                             
Sbjct: 346 NISVDVVDFETNMRWMESMYPSIRDYLSKVNAINDVEFQVIDGRKQFIVRLDCKSCTCRV 405

[Close]

BLAST of Pay0001643 vs. NCBI nr
Match: XP_016901943.1 (PREDICTED: uncharacterized protein LOC107991486 [Cucumis melo])

HSP 1 Score: 246.5 bits (628), Expect = 1.1e-61
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 60
           MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP
Sbjct: 1   MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 60

Query: 61  NISVDDTFLKSKYGGTLLTASTIDVRPVGNHANWKSIGIENNILPPTFKRRAG 114
           NISVDDTFLKSKYGGTLLTASTIDVRPVGNHANWKSIGIENNILPPTFKRRAG
Sbjct: 61  NISVDDTFLKSKYGGTLLTASTIDVRPVGNHANWKSIGIENNILPPTFKRRAG 113

[Close]

BLAST of Pay0001643 vs. NCBI nr
Match: TYK14543.1 (uncharacterized protein E5676_scaffold552G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 7.8e-44
Identity = 112/253 (44.27%), Postives = 113/253 (44.66%), Query Frame = 0


Query: 1   MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 60
           MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP
Sbjct: 249 MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 308

Query: 61  NISVDDTFLKSKYGGTLLTASTID------------------------------------ 114
           NISVDDTFLKSKYGGTLLTASTID                                    
Sbjct: 309 NISVDDTFLKSKYGGTLLTASTIDDYLSKVSFEKWARAYCTRKIYQMMTTNILENLNVIL 368

[Close]

BLAST of Pay0001643 vs. NCBI nr
Match: KAA0054854.1 (uncharacterized protein E6C27_scaffold406G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 98/166 (59.04%), Postives = 103/166 (62.05%), Query Frame = 0


Query: 1   MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 60
           MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETD EGHFKYCFMAIGACIEGWKYCRP
Sbjct: 286 MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDIEGHFKYCFMAIGACIEGWKYCRP 345

Query: 61  NISVDDT-------FLKSKYGGT------------------------------------- 114
           NISVD         +++S Y  T                                     
Sbjct: 346 NISVDVVDFETNMRWMESMYPSTRDYLSKVNAINDVEFQVIDGRKQFIVRLDCKSCTCRV 405

[Close]

BLAST of Pay0001643 vs. NCBI nr
Match: TYK28211.1 (MuDR family transposase [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42
Identity = 96/166 (57.83%), Postives = 102/166 (61.45%), Query Frame = 0


Query: 1   MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 60
           MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP
Sbjct: 254 MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 313

Query: 61  NISVDDT-------FLKSKYGGTLLTASTID----------------------------- 114
           NISVD         +++S Y       S ++                             
Sbjct: 314 NISVDVVDFETNMRWMESMYPSIRDYLSKVNAINDVEFQVIDGRKQFIVRLDCKSCTCRV 373

[Close]

BLAST of Pay0001643 vs. NCBI nr
Match: TYK22454.1 (uncharacterized protein E5676_scaffold3009G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42
Identity = 96/166 (57.83%), Postives = 102/166 (61.45%), Query Frame = 0


Query: 1   MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 60
           MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP
Sbjct: 286 MNSLNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRP 345

Query: 61  NISVDDT-------FLKSKYGGTLLTASTID----------------------------- 114
           NISVD         +++S Y       S ++                             
Sbjct: 346 NISVDVVDFETNMRWMESMYPSIRDYLSKVNAINDVEFQVIDGRKQFIVRLDCKSCTCRV 405

[Close]

BLAST of Pay0001643 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 41.6 bits (96), Expect = 5.0e-04
Identity = 22/83 (26.51%), Postives = 36/83 (43.37%), Query Frame = 0


Query: 6   GEAKESYALIPNFFMKLKEIN----PGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRPN 65
           G+  +S+ ++P         N       +  +       F+  F +    IEG+++CRP 
Sbjct: 319 GDEDQSFRVMPKLISAFHSSNGLLVDWQYDLFPNPDFASFRGVFWSFSQSIEGFQHCRPL 378

Query: 66  ISVDDTFLKSKYGGTLLTASTID 85
           I VD   L  KY   L+ AS +D
Sbjct: 379 IVVDTKSLNGKYQLKLMIASGVD 401

The following BLAST results are available for this feature:

BLAST of Pay0001643 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0001643 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E145	5.3e-62	100.00	uncharacterized protein LOC107991486 OS=Cucumis melo OX=3656 GN=LOC107991486 PE=...	[more]
A0A5D3CRP1	3.8e-44	44.27	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7UI69	5.5e-43	59.04	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3C8T8	1.2e-42	57.83	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3DFS5	1.2e-42	57.83	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Pay0001643 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901943.1	1.1e-61	100.00	PREDICTED: uncharacterized protein LOC107991486 [Cucumis melo]	[more]
TYK14543.1	7.8e-44	44.27	uncharacterized protein E5676_scaffold552G00250 [Cucumis melo var. makuwa]	[more]
KAA0054854.1	1.1e-42	59.04	uncharacterized protein E6C27_scaffold406G00610 [Cucumis melo var. makuwa]	[more]
TYK28211.1	2.5e-42	57.83	MuDR family transposase [Cucumis melo var. makuwa]	[more]
TYK22454.1	2.5e-42	57.83	uncharacterized protein E5676_scaffold3009G00020 [Cucumis melo var. makuwa]	[more]

BLAST of Pay0001643 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64260.1	5.0e-04	26.51	MuDR family transposase	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31973:SF129	OS01G0334000 PROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR31973	POLYPROTEIN, PUTATIVE-RELATED	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0001643.1	Pay0001643.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding