Pay0001574 (gene) Melon (Payzawat) v1

Overview


Name	Pay0001574
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Gag-pol polyprotein
Location	chr10: 12295577 .. 12296071 (-)
RNA-Seq Expression	Pay0001574
Synteny	Pay0001574

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATAATCAGAGAGGGACCTTCAGCTTCTCGTCCTCCTATACTGGATGGTAAAAATTACTCATATTGGAACCCTCGTATTATATTCTTTATTAAAACATTAGATGGGAGAGCTTGGAGAGCTCTTATGGTTGGATATGAACCTCCGATGATTACTGTAGATGGAGTATCAGTTCTGAAACCTGAGGTTGACTGGATTGATGCTGAAGAACAAGCATCGGTTGGGAATGCTAGAGCTCTAAATGCAATATTCAATGGTGTGGATCTAAATGTGTTCAAACTAATAAACTCCTGTAGTACAGCCAAAGATGCATGGAGAATATTGAAAGTTGCTTATGAAGGGACGTCTAAAGTTAAGATATCCAGACTACAACTGATAACATCGAAATTTGAAGCATTAAAAATGTCTGAAGATAAATTGATGCCCGAGTACAATGAGAGAGTTCTGGAGATTGCTAATGAATCACTGCTGCTTGGTGAAAAAAAAACCTAA

mRNA sequence

ATGGAGATAATCAGAGAGGGACCTTCAGCTTCTCGTCCTCCTATACTGGATGATGGGAGAGCTTGGAGAGCTCTTATGGTTGGATATGAACCTCCGATGATTACTGTAGATGGAGTATCAGTTCTGAAACCTGAGGTTGACTGGATTGATGCTGAAGAACAAGCATCGGTTGGGAATGCTAGAGCTCTAAATGCAATATTCAATGGTGTGGATCTAAATGTGTTCAAACTAATAAACTCCTGTAGTACAGCCAAAGATGCATGGAGAATATTGAAAGTTGCTTATGAAGGGACGTCTAAAGTTAAGATATCCAGACTACAACTGATAACATCGAAATTTGAAGCATTAAAAATGTCTGAAGATAAATTGATGCCCGAGTACAATGAGAGAGTTCTGGAGATTGCTAATGAATCACTGCTGCTTGGTGAAAAAAAAACCTAA

Coding sequence (CDS)

ATGGAGATAATCAGAGAGGGACCTTCAGCTTCTCGTCCTCCTATACTGGATGATGGGAGAGCTTGGAGAGCTCTTATGGTTGGATATGAACCTCCGATGATTACTGTAGATGGAGTATCAGTTCTGAAACCTGAGGTTGACTGGATTGATGCTGAAGAACAAGCATCGGTTGGGAATGCTAGAGCTCTAAATGCAATATTCAATGGTGTGGATCTAAATGTGTTCAAACTAATAAACTCCTGTAGTACAGCCAAAGATGCATGGAGAATATTGAAAGTTGCTTATGAAGGGACGTCTAAAGTTAAGATATCCAGACTACAACTGATAACATCGAAATTTGAAGCATTAAAAATGTCTGAAGATAAATTGATGCCCGAGTACAATGAGAGAGTTCTGGAGATTGCTAATGAATCACTGCTGCTTGGTGAAAAAAAAACCTAA

Protein sequence

MEIIREGPSASRPPILDDGRAWRALMVGYEPPMITVDGVSVLKPEVDWIDAEEQASVGNARALNAIFNGVDLNVFKLINSCSTAKDAWRILKVAYEGTSKVKISRLQLITSKFEALKMSEDKLMPEYNERVLEIANESLLLGEKKT

Homology

[Close]

BLAST of Pay0001574 vs. ExPASy TrEMBL
Match: A0A5A7VFI7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002280 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.4e-62
Identity = 123/144 (85.42%), Postives = 133/144 (92.36%), Query Frame = 0


Query: 1   MEIIREGPSASRPPILDDGRAWRALMVGYEPPMITVDGVSVLKPEVDWIDAEEQASVGNA 60
           M IIREGPS S PP++DDGRAWRAL+ GYEP MITVDGV +LKPEVDW DAEE+ASVGNA
Sbjct: 1   MGIIREGPSTSHPPVMDDGRAWRALVAGYEPLMITVDGVLILKPEVDWTDAEEEASVGNA 60

Query: 61  RALNAIFNGVDLNVFKLINSCSTAKDAWRILKVAYEGTSKVKISRLQLITSKFEALKMSE 120
           RALNAIFNG DLNVFKLINSCSTAK+AWRI++VAYEGTSKVKISRLQLITSKFEALKM E
Sbjct: 61  RALNAIFNGADLNVFKLINSCSTAKEAWRIMEVAYEGTSKVKISRLQLITSKFEALKMFE 120

Query: 121 DKLMPEYNERVLEIANESLLLGEK 145
           D+ + EYNERVLEIANESLLLGEK
Sbjct: 121 DESVSEYNERVLEIANESLLLGEK 144

[Close]

BLAST of Pay0001574 vs. ExPASy TrEMBL
Match: A0A5A7SJ95 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00170 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 9.2e-59
Identity = 120/162 (74.07%), Postives = 134/162 (82.72%), Query Frame = 0


Query: 1   MEIIREGPSASRPPILD------------------DGRAWRALMVGYEPPMITVDGVSVL 60
           MEIIREGPSASRPP+LD                  DG+AWRAL+ GYEPPM+T+D VSVL
Sbjct: 1   MEIIREGPSASRPPVLDGKNYSYWKPRMIFSIKTLDGKAWRALVAGYEPPMVTMDEVSVL 60

Query: 61  KPEVDWIDAEEQASVGNARALNAIFNGVDLNVFKLINSCSTAKDAWRILKVAYEGTSKVK 120
           KPEVDW D EEQASVGNARA+NAIFNGVDLNVFKLINSC+T K+AW+IL+VAYEGTSKVK
Sbjct: 61  KPEVDWTDVEEQASVGNARAINAIFNGVDLNVFKLINSCTTTKEAWKILEVAYEGTSKVK 120

Query: 121 ISRLQLITSKFEALKMSEDKLMPEYNERVLEIANESLLLGEK 145
           IS LQLITSKFE LKM+ED+ + EYNERVLEIAN+SLLL EK
Sbjct: 121 ISSLQLITSKFEVLKMTEDESVSEYNERVLEIANDSLLLDEK 162

[Close]

BLAST of Pay0001574 vs. ExPASy TrEMBL
Match: A0A5A7TAN7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003180 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58
Identity = 120/162 (74.07%), Postives = 136/162 (83.95%), Query Frame = 0


Query: 1   MEIIREGPSASRPPILD------------------DGRAWRALMVGYEPPMITVDGVSVL 60
           MEIIREGPSASRPP+ D                  D +AWR L+ GYEPPM+TVDGVSV 
Sbjct: 1   MEIIREGPSASRPPVPDGKNYLYWKPRMIFFVKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60

Query: 61  KPEVDWIDAEEQASVGNARALNAIFNGVDLNVFKLINSCSTAKDAWRILKVAYEGTSKVK 120
           KP+VDW DAEEQASVGNARA+NAIFNG+DLNVFKLINSC+TAK+AW+IL+VAYEGTSKVK
Sbjct: 61  KPKVDWTDAEEQASVGNARAINAIFNGMDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 ISRLQLITSKFEALKMSEDKLMPEYNERVLEIANESLLLGEK 145
           ISRLQLITSKFEAL+M+ED+ + EYNERVLEIAN+SLLLGEK
Sbjct: 121 ISRLQLITSKFEALEMTEDESVSEYNERVLEIANDSLLLGEK 162

[Close]

BLAST of Pay0001574 vs. ExPASy TrEMBL
Match: A0A5D3BCD8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00170 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.6e-58
Identity = 120/162 (74.07%), Postives = 136/162 (83.95%), Query Frame = 0


Query: 1   MEIIREGPSASRPPILD------------------DGRAWRALMVGYEPPMITVDGVSVL 60
           MEIIREGPSASRPP+ D                  D +AWR L+ GYEPPM+TVDGVSV 
Sbjct: 1   MEIIREGPSASRPPVPDGKNYLYWKPRMIFSIKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60

Query: 61  KPEVDWIDAEEQASVGNARALNAIFNGVDLNVFKLINSCSTAKDAWRILKVAYEGTSKVK 120
           KP+VDW DAEEQASVGNARA+NAIFNGVDLNVFKLINSC+TAK+AW+IL+VAYEGTSKVK
Sbjct: 61  KPKVDWTDAEEQASVGNARAINAIFNGVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 ISRLQLITSKFEALKMSEDKLMPEYNERVLEIANESLLLGEK 145
           ISRLQLITSKFEAL+M++D+ + EYNERVLEIAN+SLLLGEK
Sbjct: 121 ISRLQLITSKFEALEMTKDESVSEYNERVLEIANDSLLLGEK 162

[Close]

BLAST of Pay0001574 vs. ExPASy TrEMBL
Match: A0A5A7T4B1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00340 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.0e-58
Identity = 122/162 (75.31%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 1   MEIIREGPSASRPPILD------------------DGRAWRALMVGYEPPMITVDGVSVL 60
           MEIIREGPSASRPPILD                  DGR WRAL+ GYEPPM+T+D VSV 
Sbjct: 1   MEIIREGPSASRPPILDGKNYSYWKPRMIFFIKTLDGRVWRALVAGYEPPMVTLDEVSVP 60

Query: 61  KPEVDWIDAEEQASVGNARALNAIFNGVDLNVFKLINSCSTAKDAWRILKVAYEGTSKVK 120
           KPEV+W DAEEQASV NARA+NAIFNGVDLNVFKLINSC+TAKD W+IL+VAYEGTSKVK
Sbjct: 61  KPEVNWTDAEEQASVRNARAINAIFNGVDLNVFKLINSCTTAKDTWKILEVAYEGTSKVK 120

Query: 121 ISRLQLITSKFEALKMSEDKLMPEYNERVLEIANESLLLGEK 145
           IS+LQLITSKFEALKM ED+L  EYNERVLEIAN+SLLL EK
Sbjct: 121 ISKLQLITSKFEALKMIEDELASEYNERVLEIANDSLLLSEK 162

[Close]

BLAST of Pay0001574 vs. NCBI nr
Match: KAA0065827.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ96565.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 248.8 bits (634), Expect = 2.8e-62
Identity = 123/144 (85.42%), Postives = 133/144 (92.36%), Query Frame = 0


Query: 1   MEIIREGPSASRPPILDDGRAWRALMVGYEPPMITVDGVSVLKPEVDWIDAEEQASVGNA 60
           M IIREGPS S PP++DDGRAWRAL+ GYEP MITVDGV +LKPEVDW DAEE+ASVGNA
Sbjct: 1   MGIIREGPSTSHPPVMDDGRAWRALVAGYEPLMITVDGVLILKPEVDWTDAEEEASVGNA 60

Query: 61  RALNAIFNGVDLNVFKLINSCSTAKDAWRILKVAYEGTSKVKISRLQLITSKFEALKMSE 120
           RALNAIFNG DLNVFKLINSCSTAK+AWRI++VAYEGTSKVKISRLQLITSKFEALKM E
Sbjct: 61  RALNAIFNGADLNVFKLINSCSTAKEAWRIMEVAYEGTSKVKISRLQLITSKFEALKMFE 120

Query: 121 DKLMPEYNERVLEIANESLLLGEK 145
           D+ + EYNERVLEIANESLLLGEK
Sbjct: 121 DESVSEYNERVLEIANESLLLGEK 144

[Close]

BLAST of Pay0001574 vs. NCBI nr
Match: KAA0025734.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK06164.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 1.9e-58
Identity = 120/162 (74.07%), Postives = 134/162 (82.72%), Query Frame = 0


Query: 1   MEIIREGPSASRPPILD------------------DGRAWRALMVGYEPPMITVDGVSVL 60
           MEIIREGPSASRPP+LD                  DG+AWRAL+ GYEPPM+T+D VSVL
Sbjct: 1   MEIIREGPSASRPPVLDGKNYSYWKPRMIFSIKTLDGKAWRALVAGYEPPMVTMDEVSVL 60

Query: 61  KPEVDWIDAEEQASVGNARALNAIFNGVDLNVFKLINSCSTAKDAWRILKVAYEGTSKVK 120
           KPEVDW D EEQASVGNARA+NAIFNGVDLNVFKLINSC+T K+AW+IL+VAYEGTSKVK
Sbjct: 61  KPEVDWTDVEEQASVGNARAINAIFNGVDLNVFKLINSCTTTKEAWKILEVAYEGTSKVK 120

Query: 121 ISRLQLITSKFEALKMSEDKLMPEYNERVLEIANESLLLGEK 145
           IS LQLITSKFE LKM+ED+ + EYNERVLEIAN+SLLL EK
Sbjct: 121 ISSLQLITSKFEVLKMTEDESVSEYNERVLEIANDSLLLDEK 162

[Close]

BLAST of Pay0001574 vs. NCBI nr
Match: KAA0038419.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 235.7 bits (600), Expect = 2.5e-58
Identity = 120/162 (74.07%), Postives = 136/162 (83.95%), Query Frame = 0


Query: 1   MEIIREGPSASRPPILD------------------DGRAWRALMVGYEPPMITVDGVSVL 60
           MEIIREGPSASRPP+ D                  D +AWR L+ GYEPPM+TVDGVSV 
Sbjct: 1   MEIIREGPSASRPPVPDGKNYLYWKPRMIFFVKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60

Query: 61  KPEVDWIDAEEQASVGNARALNAIFNGVDLNVFKLINSCSTAKDAWRILKVAYEGTSKVK 120
           KP+VDW DAEEQASVGNARA+NAIFNG+DLNVFKLINSC+TAK+AW+IL+VAYEGTSKVK
Sbjct: 61  KPKVDWTDAEEQASVGNARAINAIFNGMDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 ISRLQLITSKFEALKMSEDKLMPEYNERVLEIANESLLLGEK 145
           ISRLQLITSKFEAL+M+ED+ + EYNERVLEIAN+SLLLGEK
Sbjct: 121 ISRLQLITSKFEALEMTEDESVSEYNERVLEIANDSLLLGEK 162

[Close]

BLAST of Pay0001574 vs. NCBI nr
Match: TYJ96973.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 3.2e-58
Identity = 120/162 (74.07%), Postives = 136/162 (83.95%), Query Frame = 0


Query: 1   MEIIREGPSASRPPILD------------------DGRAWRALMVGYEPPMITVDGVSVL 60
           MEIIREGPSASRPP+ D                  D +AWR L+ GYEPPM+TVDGVSV 
Sbjct: 1   MEIIREGPSASRPPVPDGKNYLYWKPRMIFSIKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60

Query: 61  KPEVDWIDAEEQASVGNARALNAIFNGVDLNVFKLINSCSTAKDAWRILKVAYEGTSKVK 120
           KP+VDW DAEEQASVGNARA+NAIFNGVDLNVFKLINSC+TAK+AW+IL+VAYEGTSKVK
Sbjct: 61  KPKVDWTDAEEQASVGNARAINAIFNGVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 ISRLQLITSKFEALKMSEDKLMPEYNERVLEIANESLLLGEK 145
           ISRLQLITSKFEAL+M++D+ + EYNERVLEIAN+SLLLGEK
Sbjct: 121 ISRLQLITSKFEALEMTKDESVSEYNERVLEIANDSLLLGEK 162

[Close]

BLAST of Pay0001574 vs. NCBI nr
Match: TYK14799.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 235.0 bits (598), Expect = 4.2e-58
Identity = 122/162 (75.31%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 1   MEIIREGPSASRPPILD------------------DGRAWRALMVGYEPPMITVDGVSVL 60
           MEIIREGPSASRPPILD                  DGR WRAL+ GYEPPM+T+D VSV 
Sbjct: 1   MEIIREGPSASRPPILDGKNYSYWKPRMIFFIKTLDGRVWRALVAGYEPPMVTLDEVSVP 60

Query: 61  KPEVDWIDAEEQASVGNARALNAIFNGVDLNVFKLINSCSTAKDAWRILKVAYEGTSKVK 120
           KPEV+W DAEEQASV NARA+NAIFNGVDLNVFKLINSC+TAKD W+IL+VAYEGTSKVK
Sbjct: 61  KPEVNWTDAEEQASVRNARAINAIFNGVDLNVFKLINSCTTAKDTWKILEVAYEGTSKVK 120

Query: 121 ISRLQLITSKFEALKMSEDKLMPEYNERVLEIANESLLLGEK 145
           IS+LQLITSKFEALKM ED+L  EYNERVLEIAN+SLLL EK
Sbjct: 121 ISKLQLITSKFEALKMIEDELASEYNERVLEIANDSLLLSEK 162

The following BLAST results are available for this feature:

BLAST of Pay0001574 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0001574 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFI7	1.4e-62	85.42	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G...	[more]
A0A5A7SJ95	9.2e-59	74.07	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G...	[more]
A0A5A7TAN7	1.2e-58	74.07	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G...	[more]
A0A5D3BCD8	1.6e-58	74.07	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G...	[more]
A0A5A7T4B1	2.0e-58	75.31	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G...	[more]

BLAST of Pay0001574 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065827.1	2.8e-62	85.42	gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ96565.1 gag-pol polyprotein [...	[more]
KAA0025734.1	1.9e-58	74.07	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK06164.1 gag-pol polyprotein [...	[more]
KAA0038419.1	2.5e-58	74.07	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYJ96973.1	3.2e-58	74.07	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK14799.1	4.2e-58	75.31	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0001574 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 59..139 e-value: 4.8E-11 score: 42.6
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 43..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0001574.1	Pay0001574.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding