Pay0001334 (gene) Melon (Payzawat) v1

Overview


Name	Pay0001334
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Cytochrome b559 subunit alpha
Location	Contig00288_ERROPOS136135: 41382 .. 41633 (+)
RNA-Seq Expression	Pay0001334
Synteny	Pay0001334

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGATCTTTTTAG

mRNA sequence

ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGATCTTTTTAG

Coding sequence (CDS)

ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGATCTTTTTAG

Protein sequence

MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

Homology

[Close]

BLAST of Pay0001334 vs. ExPASy Swiss-Prot
Match: Q70XY9 (Cytochrome b559 subunit alpha OS=Amborella trichopoda OX=13333 GN=psbE PE=3 SV=3)

HSP 1 Score: 171.8 bits (434), Expect = 3.3e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of Pay0001334 vs. ExPASy Swiss-Prot
Match: P56779 (Cytochrome b559 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=psbE PE=1 SV=4)

HSP 1 Score: 171.8 bits (434), Expect = 3.3e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of Pay0001334 vs. ExPASy Swiss-Prot
Match: P59702 (Cytochrome b559 subunit alpha OS=Atropa belladonna OX=33113 GN=psbE PE=3 SV=3)

HSP 1 Score: 171.8 bits (434), Expect = 3.3e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of Pay0001334 vs. ExPASy Swiss-Prot
Match: P69382 (Cytochrome b559 subunit alpha OS=Beta vulgaris OX=161934 GN=psbE PE=3 SV=2)

HSP 1 Score: 171.8 bits (434), Expect = 3.3e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of Pay0001334 vs. ExPASy Swiss-Prot
Match: Q4VZH5 (Cytochrome b559 subunit alpha OS=Cucumis sativus OX=3659 GN=psbE PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.3e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of Pay0001334 vs. ExPASy TrEMBL
Match: A0A0U2T221 (Cytochrome b559 subunit alpha OS=Oenothera oakesiana OX=482602 GN=psbE PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of Pay0001334 vs. ExPASy TrEMBL
Match: A0A218KG52 (Cytochrome b559 subunit alpha OS=Cucumis sativus var. hardwickii OX=319220 GN=psbE PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of Pay0001334 vs. ExPASy TrEMBL
Match: A0A1U9YE75 (Cytochrome b559 subunit alpha OS=Rehmannia glutinosa OX=99300 GN=psbE PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of Pay0001334 vs. ExPASy TrEMBL
Match: A0A1Z1CEE6 (Cytochrome b559 subunit alpha OS=Dichrostachys cinerea OX=196665 GN=psbE PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of Pay0001334 vs. ExPASy TrEMBL
Match: A0A1X9QHD2 (Cytochrome b559 subunit alpha OS=Acer palmatum OX=66201 GN=psbE PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of Pay0001334 vs. NCBI nr
Match: QJT42880.1 (photosystem II protein V [Opuntia quimilo])

HSP 1 Score: 171.8 bits (434), Expect = 2.5e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
           MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 20  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 79

Query: 61  QGIPLITGRFDSLEQLDEFSRSF 84
           QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 80  QGIPLITGRFDSLEQLDEFSRSF 102

[Close]

BLAST of Pay0001334 vs. NCBI nr
Match: YP_010142087.1 (photosystem II protein V [Muntingia calabura] >QQK92332.1 photosystem II protein V [Muntingia calabura])

HSP 1 Score: 171.8 bits (434), Expect = 2.5e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
           MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 57  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 116

Query: 61  QGIPLITGRFDSLEQLDEFSRSF 84
           QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 117 QGIPLITGRFDSLEQLDEFSRSF 139

[Close]

BLAST of Pay0001334 vs. NCBI nr
Match: TYI97217.1 (hypothetical protein E1A91_D01G127700v1 [Gossypium mustelinum])

HSP 1 Score: 171.8 bits (434), Expect = 2.5e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
           MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 110 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 169

Query: 61  QGIPLITGRFDSLEQLDEFSRSF 84
           QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 170 QGIPLITGRFDSLEQLDEFSRSF 192

[Close]

BLAST of Pay0001334 vs. NCBI nr
Match: QBS31917.1 (cytochrome b559 alpha chain [Dipteronia sinensis])

HSP 1 Score: 171.8 bits (434), Expect = 2.5e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 11 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 70

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 71 QGIPLITGRFDSLEQLDEFSRSF 93

[Close]

BLAST of Pay0001334 vs. NCBI nr
Match: QBS31028.1 (cytochrome b559 alpha chain [Dipteronia sinensis])

HSP 1 Score: 171.8 bits (434), Expect = 2.5e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
           MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 62  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 121

Query: 61  QGIPLITGRFDSLEQLDEFSRSF 84
           QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 122 QGIPLITGRFDSLEQLDEFSRSF 144

[Close]

BLAST of Pay0001334 vs. TAIR 10
Match: ATCG00580.1 (photosystem II reaction center protein E )

HSP 1 Score: 169.9 bits (429), Expect = 8.9e-43
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFD LEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDPLEQLDEFSRSF 83

The following BLAST results are available for this feature:

BLAST of Pay0001334 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q70XY9	3.3e-42	100.00	Cytochrome b559 subunit alpha OS=Amborella trichopoda OX=13333 GN=psbE PE=3 SV=3	[more]
P56779	3.3e-42	100.00	Cytochrome b559 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=psbE PE=1 SV=4	[more]
P59702	3.3e-42	100.00	Cytochrome b559 subunit alpha OS=Atropa belladonna OX=33113 GN=psbE PE=3 SV=3	[more]
P69382	3.3e-42	100.00	Cytochrome b559 subunit alpha OS=Beta vulgaris OX=161934 GN=psbE PE=3 SV=2	[more]
Q4VZH5	3.3e-42	100.00	Cytochrome b559 subunit alpha OS=Cucumis sativus OX=3659 GN=psbE PE=3 SV=1	[more]

BLAST of Pay0001334 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0U2T221	1.2e-39	100.00	Cytochrome b559 subunit alpha OS=Oenothera oakesiana OX=482602 GN=psbE PE=3 SV=1	[more]
A0A218KG52	1.2e-39	100.00	Cytochrome b559 subunit alpha OS=Cucumis sativus var. hardwickii OX=319220 GN=ps...	[more]
A0A1U9YE75	1.2e-39	100.00	Cytochrome b559 subunit alpha OS=Rehmannia glutinosa OX=99300 GN=psbE PE=3 SV=1	[more]
A0A1Z1CEE6	1.2e-39	100.00	Cytochrome b559 subunit alpha OS=Dichrostachys cinerea OX=196665 GN=psbE PE=3 SV...	[more]
A0A1X9QHD2	1.2e-39	100.00	Cytochrome b559 subunit alpha OS=Acer palmatum OX=66201 GN=psbE PE=3 SV=1	[more]

BLAST of Pay0001334 vs. NCBI nr


Match Name	E-value	Identity	Description
QJT42880.1	2.5e-39	100.00	photosystem II protein V [Opuntia quimilo]	[more]
YP_010142087.1	2.5e-39	100.00	photosystem II protein V [Muntingia calabura] >QQK92332.1 photosystem II protein...	[more]
TYI97217.1	2.5e-39	100.00	hypothetical protein E1A91_D01G127700v1 [Gossypium mustelinum]	[more]
QBS31917.1	2.5e-39	100.00	cytochrome b559 alpha chain [Dipteronia sinensis]	[more]
QBS31028.1	2.5e-39	100.00	cytochrome b559 alpha chain [Dipteronia sinensis]	[more]

BLAST of Pay0001334 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00580.1	8.9e-43	98.80	photosystem II reaction center protein E	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006217	Photosystem II cytochrome b559, alpha subunit	PIRSF	PIRSF000036	Cytochrome_PsbE	coord: 1..83 e-value: 2.3E-53 score: 176.0
IPR006217	Photosystem II cytochrome b559, alpha subunit	TIGRFAM	TIGR01332	TIGR01332	coord: 2..80 e-value: 1.4E-47 score: 157.6
IPR006217	Photosystem II cytochrome b559, alpha subunit	HAMAP	MF_00642	PSII_PsbE	coord: 1..81 score: 32.335804
IPR037025	Photosystem II cytochrome b559, alpha subunit superfamily	GENE3D	1.20.5.860	Photosystem II cytochrome b559, alpha subunit	coord: 1..83 e-value: 5.3E-50 score: 169.2
IPR013081	Photosystem II cytochrome b559, N-terminal	PFAM	PF00283	Cytochrom_B559	coord: 6..34 e-value: 1.4E-15 score: 56.4
IPR013082	Photosystem II cytochrome b559, alpha subunit, lumenal region	PFAM	PF00284	Cytochrom_B559a	coord: 42..79 e-value: 3.2E-21 score: 74.8
None	No IPR available	PANTHER	PTHR33391	CYTOCHROME B559 SUBUNIT BETA-RELATED	coord: 1..83
None	No IPR available	PANTHER	PTHR33391:SF15	CYTOCHROME B559 SUBUNIT ALPHA	coord: 1..83
None	No IPR available	SUPERFAMILY	161045	Cytochrome b559 subunits	coord: 3..83
IPR006216	Photosystem II cytochrome b559, conserved site	PROSITE	PS00537	CYTOCHROME_B559	coord: 14..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0001334.1	Pay0001334.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0031361	integral component of thylakoid membrane
cellular_component	GO:0009539	photosystem II reaction center
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0046872	metal ion binding