Pay0001242 (gene) Melon (Payzawat) v1

Overview


Name	Pay0001242
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Location	chr07: 8480996 .. 8482039 (-)
RNA-Seq Expression	Pay0001242
Synteny	Pay0001242

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTTATCACGGGACTGCCCAAGACCTTGAAGGGCTACACGGTGATCTGGGTTGTGGTCGACAGACTCACGAAGACAGCCCACTTCGTGCCAGGGAAATCCACGTACACTGCCAGCAAGTGGGGGCAGTTATACATGACGGAAATAGTAAGACTGCACGGAGTACCAGTATCCATCGTTTCAGACAGGGATGCCCGTTTCACTTCGAAATTTTGGCAAGGGCTCCAACTTGCATTAGGTACGAGGCTGGACTTCAGCACGGCATTCCACCCTCAGACTGATGGTCAGACAGAGAGACTGAACCAGATTTTGGAGGATATGCTGCGGGCCTGTGTGCTAGAGTTTTCAGGAAGTTGGGACTCCCACCTGCATCTAATGGAGTTCGCCTATAATAACAGTTACCAGGCTACCATTGGTATGGCTCCGTTTGAGGCTCTGTATGGCAAGTGCTGTAGATCCCCTGTCTGCTGGGGCGAGGTTGGAGAGCAGAGGATGCTAGGCCCCGAGTTAGTGCAGACTACCAATGCAGCCATACAGAAGATCCGAGCTCGTATGCTGACCGCACAGAGCAGACAGAAGAGTTACGCTGATGTACGACGTAAGGACCTCGAGTTTGAAGTGGGAGATATGGTCTTTTTGAAGGTAGCACCGATGAAGGGCGTTCTGAGGTTCGAGAAGAAAGGGAAGTTGAGTCCACGTTTCGTGGGGCCATTTGAGATACTGGAACGGATTGGCCCTGTGGCTTATCGTTTGGCCTTGCCCCCATCCCTCTCAGCAGTGCATGACGTATTCCATGTCTCCATGTTGAGGAGATACGTCGCAGACCCGACGCACATCGTGGACTTCGAGCCCTTACAGGTCAGTGAGAACTTGAGTTACGAGGAGCAGCCTGTCGAGATCTTAGCAAGAGAGATCAAGAAGCTTCGTAGTAGAGATATTCCACTAGTCAAAGTCCTTTGGCAGAACCATGGAGTTGAAGAGGCCACGTGGGAGAGAGAAGAGGACATGAAGGCCCAGTACCCAGAGCTGTTCGAGGATTAG

mRNA sequence

ATGGACTTTATCACGGGACTGCCCAAGACCTTGAAGGGCTACACGGTGATCTGGGTTGTGGTCGACAGACTCACGAAGACAGCCCACTTCGTGCCAGGGAAATCCACGTACACTGCCAGCAAGTGGGGGCAGTTATACATGACGGAAATAGTAAGACTGCACGGAGTACCAAGACTGAACCAGATTTTGGAGGATATGCTGCGGGCCTGTGTGCTAGAGTTTTCAGGAAGTTGGGACTCCCACCTGCATCTAATGGAGTTCGCCTATAATAACAGTTACCAGGCTACCATTGGTATGGCTCCGTTTGAGGCTCTGTATGGCAAGTGCTGTAGATCCCCTGTCTGCTGGGGCGAGGACCTCGAGTTTGAAGTGGGAGATATGGTCTTTTTGAAGGTAGCACCGATGAAGGGCGTTCTGAGGTTCGAGAAGAAAGGGAAGTTGATGCATGACGTATTCCATGTCTCCATGTTGAGGAGATACGTCGCAGACCCGACGCACATCGTGGACTTCGAGCCCTTACAGGTCAGTGAGAACTTGAGTTACGAGGAGCAGCCTGTCGAGATCTTAGCAAGAGAGATCAAGAAGCTTCGTAGTAGAGATATTCCACTAGTCAAAGTCCTTTGGCAGAACCATGGAGTTGAAGAGGCCACGTGGGAGAGAGAAGAGGACATGAAGGCCCAGTACCCAGAGCTGTTCGAGGATTAG

Coding sequence (CDS)

ATGGACTTTATCACGGGACTGCCCAAGACCTTGAAGGGCTACACGGTGATCTGGGTTGTGGTCGACAGACTCACGAAGACAGCCCACTTCGTGCCAGGGAAATCCACGTACACTGCCAGCAAGTGGGGGCAGTTATACATGACGGAAATAGTAAGACTGCACGGAGTACCAAGACTGAACCAGATTTTGGAGGATATGCTGCGGGCCTGTGTGCTAGAGTTTTCAGGAAGTTGGGACTCCCACCTGCATCTAATGGAGTTCGCCTATAATAACAGTTACCAGGCTACCATTGGTATGGCTCCGTTTGAGGCTCTGTATGGCAAGTGCTGTAGATCCCCTGTCTGCTGGGGCGAGGACCTCGAGTTTGAAGTGGGAGATATGGTCTTTTTGAAGGTAGCACCGATGAAGGGCGTTCTGAGGTTCGAGAAGAAAGGGAAGTTGATGCATGACGTATTCCATGTCTCCATGTTGAGGAGATACGTCGCAGACCCGACGCACATCGTGGACTTCGAGCCCTTACAGGTCAGTGAGAACTTGAGTTACGAGGAGCAGCCTGTCGAGATCTTAGCAAGAGAGATCAAGAAGCTTCGTAGTAGAGATATTCCACTAGTCAAAGTCCTTTGGCAGAACCATGGAGTTGAAGAGGCCACGTGGGAGAGAGAAGAGGACATGAAGGCCCAGTACCCAGAGCTGTTCGAGGATTAG

Protein sequence

MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPRLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEDLEFEVGDMVFLKVAPMKGVLRFEKKGKLMHDVFHVSMLRRYVADPTHIVDFEPLQVSENLSYEEQPVEILAREIKKLRSRDIPLVKVLWQNHGVEEATWEREEDMKAQYPELFED

Homology

[Close]

BLAST of Pay0001242 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-10
Identity = 52/191 (27.23%), Postives = 74/191 (38.74%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDF+TGLP T     +I VVVDR +K AHF+  + T  A++   L    I   HG P   
Sbjct: 1200 MDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTI 1259

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 120
                                                   R  Q L  +LRA V     +W
Sbjct: 1260 TSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNW 1319

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEDLEFEVGDMVFLKVAPMKGV 150
              +L  +EF YN++   T+G +PFE   G    +P    +D E        +++A     
Sbjct: 1320 HVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDD-EVNARSFTAVELAKHLKA 1379

[Close]

BLAST of Pay0001242 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-10
Identity = 51/191 (26.70%), Postives = 73/191 (38.22%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDF+TGLP T     +I VVVDR +K AHF+  + T  A++   L    I   HG P   
Sbjct: 1174 MDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTI 1233

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 120
                                                   R  Q L  +LRA       +W
Sbjct: 1234 TSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNW 1293

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEDLEFEVGDMVFLKVAPMKGV 150
              +L  +EF YN++   T+G +PFE   G    +P    +D E        +++A     
Sbjct: 1294 HVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDD-EVNARSFTAVELAKHLKA 1353

[Close]

BLAST of Pay0001242 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.1e-08
Identity = 38/148 (25.68%), Postives = 61/148 (41.22%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P   
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 107
                                                   R NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

[Close]

BLAST of Pay0001242 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.1e-08
Identity = 38/148 (25.68%), Postives = 61/148 (41.22%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P   
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 107
                                                   R NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

[Close]

BLAST of Pay0001242 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.1e-08
Identity = 38/148 (25.68%), Postives = 61/148 (41.22%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P   
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 107
                                                   R NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

[Close]

BLAST of Pay0001242 vs. ExPASy TrEMBL
Match: A0A5A7TP01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484G00070 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 7.7e-116
Identity = 231/347 (66.57%), Postives = 233/347 (67.15%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP   
Sbjct: 1191 MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1250

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 120
                                                   RLNQILEDMLRACVLEFSGSW
Sbjct: 1251 VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1310

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE-------------------- 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE                    
Sbjct: 1311 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1370

Query: 181  ----------------------DLEFEVGDMVFLKVAPMKGVLRFEKKGKL--------- 235
                                  DLEFEVGDMVFLKVAPMKGVLRFEKKGKL         
Sbjct: 1371 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 1430

[Close]

BLAST of Pay0001242 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 2.1e-113
Identity = 222/347 (63.98%), Postives = 233/347 (67.15%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDFITGLPKTLKGYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVP   
Sbjct: 1146 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1205

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 120
                                                   RLNQILEDMLRACVLEFSGSW
Sbjct: 1206 ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQIERLNQILEDMLRACVLEFSGSW 1265

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE-------------------- 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE                    
Sbjct: 1266 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGLELVQTTNAAIQ 1325

Query: 181  ----------------------DLEFEVGDMVFLKVAPMKGVLRFEKKGKL--------- 235
                                  DLEFEVGDMVFLKVAPMKGVLRF KKGKL         
Sbjct: 1326 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFVKKGKLSPRFVGPFE 1385

[Close]

BLAST of Pay0001242 vs. ExPASy TrEMBL
Match: A0A5A7SSL3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold465G00540 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 2.1e-113
Identity = 221/347 (63.69%), Postives = 233/347 (67.15%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDFITGLPKTLKGYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVP   
Sbjct: 1146 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1205

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 120
                                                   RLNQILEDMLRACVLEFSGSW
Sbjct: 1206 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1265

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE-------------------- 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE                    
Sbjct: 1266 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1325

Query: 181  ----------------------DLEFEVGDMVFLKVAPMKGVLRFEKKGKL--------- 235
                                  DLEFEVGDMVFLKVAPMKGVLRF KKGKL         
Sbjct: 1326 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFE 1385

[Close]

BLAST of Pay0001242 vs. ExPASy TrEMBL
Match: A0A5D3CQB5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001420 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.6e-113
Identity = 221/347 (63.69%), Postives = 233/347 (67.15%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDFITGLPKTL+GYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVP   
Sbjct: 1188 MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1247

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 120
                                                   RLNQILEDMLRACVLEFSGSW
Sbjct: 1248 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1307

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE-------------------- 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE                    
Sbjct: 1308 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1367

Query: 181  ----------------------DLEFEVGDMVFLKVAPMKGVLRFEKKGKL--------- 235
                                  DLEFEVGDMVFLKVAPMKGVLRF KKGKL         
Sbjct: 1368 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFE 1427

[Close]

BLAST of Pay0001242 vs. ExPASy TrEMBL
Match: A0A5A7UBS1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00110 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.6e-113
Identity = 221/347 (63.69%), Postives = 233/347 (67.15%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDFITGLPKTL+GYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVP   
Sbjct: 1188 MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1247

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 120
                                                   RLNQILEDMLRACVLEFSGSW
Sbjct: 1248 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1307

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE-------------------- 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE                    
Sbjct: 1308 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1367

Query: 181  ----------------------DLEFEVGDMVFLKVAPMKGVLRFEKKGKL--------- 235
                                  DLEFEVGDMVFLKVAPMKGVLRF KKGKL         
Sbjct: 1368 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFE 1427

[Close]

BLAST of Pay0001242 vs. NCBI nr
Match: KAA0025917.1 (pol protein [Cucumis melo var. makuwa] >KAA0042949.1 pol protein [Cucumis melo var. makuwa] >KAA0048622.1 pol protein [Cucumis melo var. makuwa] >KAA0056306.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 426.4 bits (1095), Expect = 1.6e-115
Identity = 231/347 (66.57%), Postives = 233/347 (67.15%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP   
Sbjct: 1191 MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1250

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 120
                                                   RLNQILEDMLRACVLEFSGSW
Sbjct: 1251 VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1310

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE-------------------- 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE                    
Sbjct: 1311 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1370

Query: 181  ----------------------DLEFEVGDMVFLKVAPMKGVLRFEKKGKL--------- 235
                                  DLEFEVGDMVFLKVAPMKGVLRFEKKGKL         
Sbjct: 1371 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 1430

[Close]

BLAST of Pay0001242 vs. NCBI nr
Match: KAA0032541.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 418.3 bits (1074), Expect = 4.3e-113
Identity = 221/347 (63.69%), Postives = 233/347 (67.15%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDFITGLPKTLKGYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVP   
Sbjct: 1146 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1205

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 120
                                                   RLNQILEDMLRACVLEFSGSW
Sbjct: 1206 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1265

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE-------------------- 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE                    
Sbjct: 1266 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1325

Query: 181  ----------------------DLEFEVGDMVFLKVAPMKGVLRFEKKGKL--------- 235
                                  DLEFEVGDMVFLKVAPMKGVLRF KKGKL         
Sbjct: 1326 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFE 1385

[Close]

BLAST of Pay0001242 vs. NCBI nr
Match: KAA0060745.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 418.3 bits (1074), Expect = 4.3e-113
Identity = 222/347 (63.98%), Postives = 233/347 (67.15%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDFITGLPKTLKGYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVP   
Sbjct: 1146 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1205

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 120
                                                   RLNQILEDMLRACVLEFSGSW
Sbjct: 1206 ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQIERLNQILEDMLRACVLEFSGSW 1265

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE-------------------- 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE                    
Sbjct: 1266 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGLELVQTTNAAIQ 1325

Query: 181  ----------------------DLEFEVGDMVFLKVAPMKGVLRFEKKGKL--------- 235
                                  DLEFEVGDMVFLKVAPMKGVLRF KKGKL         
Sbjct: 1326 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFVKKGKLSPRFVGPFE 1385

[Close]

BLAST of Pay0001242 vs. NCBI nr
Match: KAA0031437.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 417.5 bits (1072), Expect = 7.4e-113
Identity = 221/347 (63.69%), Postives = 233/347 (67.15%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDFITGLPKTL+GYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVP   
Sbjct: 1129 MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1188

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 120
                                                   RLNQILEDMLRACVLEFSGSW
Sbjct: 1189 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1248

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE-------------------- 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE                    
Sbjct: 1249 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1308

Query: 181  ----------------------DLEFEVGDMVFLKVAPMKGVLRFEKKGKL--------- 235
                                  DLEFEVGDMVFLKVAPMKGVLRF KKGKL         
Sbjct: 1309 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFE 1368

[Close]

BLAST of Pay0001242 vs. NCBI nr
Match: KAA0033825.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 417.5 bits (1072), Expect = 7.4e-113
Identity = 221/347 (63.69%), Postives = 233/347 (67.15%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVP--- 60
            MDFITGLPKTL+GYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVP   
Sbjct: 1793 MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1852

Query: 61   ---------------------------------------RLNQILEDMLRACVLEFSGSW 120
                                                   RLNQILEDMLRACVLEFSGSW
Sbjct: 1853 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1912

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE-------------------- 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGE                    
Sbjct: 1913 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1972

Query: 181  ----------------------DLEFEVGDMVFLKVAPMKGVLRFEKKGKL--------- 235
                                  DLEFEVGDMVFLKVAPMKGVLRF KKGKL         
Sbjct: 1973 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFE 2032

The following BLAST results are available for this feature:

BLAST of Pay0001242 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7LHG5	1.9e-10	27.23	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	5.5e-10	26.70	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	5.1e-08	25.68	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	5.1e-08	25.68	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	5.1e-08	25.68	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Pay0001242 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TP01	7.7e-116	66.57	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold14...	[more]
A0A5A7V4E4	2.1e-113	63.98	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]
A0A5A7SSL3	2.1e-113	63.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46...	[more]
A0A5D3CQB5	3.6e-113	63.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UBS1	3.6e-113	63.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of Pay0001242 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025917.1	1.6e-115	66.57	pol protein [Cucumis melo var. makuwa] >KAA0042949.1 pol protein [Cucumis melo v...	[more]
KAA0032541.1	4.3e-113	63.69	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060745.1	4.3e-113	63.98	pol protein [Cucumis melo var. makuwa]	[more]
KAA0031437.1	7.4e-113	63.69	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033825.1	7.4e-113	63.69	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0001242 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 59..126 e-value: 4.5E-12 score: 47.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..58 e-value: 1.7E-6 score: 29.9
None	No IPR available	PANTHER	PTHR46148:SF18	IPP TRANSFERASE	coord: 63..228
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 63..228
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 163..233
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0001242.1	Pay0001242.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity