Pay0000859 (gene) Melon (Payzawat) v1

Overview


Name	Pay0000859
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pol protein
Location	chr08: 10545384 .. 10545872 (+)
RNA-Seq Expression	Pay0000859
Synteny	Pay0000859

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGACAGCACAGAGCAGACAGAAGAGTTATGCTAATGAACAGCGTAAGGATCTCGAGTTTGAGGTGGAAGACATGGTCTTTCTGAAGGTAACACCTATGAAGGGTGTTCTGAGGTTCGAGAAGAAGGGGAAGCTAAATCCACTTTTTGTAGGGCCATTTGAGATACTTGAGTGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCCCCATCATTTTCTGCAGTGCATGATGTGTTCTATGTCTCCATGCTGAGGAGGTATGTTGCAGACCCGACACATGTGGTTGACTTTGAGCCATTGCAAATTAATGAGGACTTGAGCTACAAGGAGCAACCAGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTCCATAATCGAGGAATCTCACTGGTCAAAGTTCTTTGGCGAAACCACGGAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGACTTGAGAGCCCAGTACCCCGAGCTGTTCGAGAACTAG

mRNA sequence

ATGTTGACAGCACAGAGCAGACAGAAGAGTTATGCTAATGAACAGCGTAAGGATCTCGAGTTTGAGGTGGAAGACATGGTCTTTCTGAAGGTAACACCTATGAAGGGTTGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCCCCATCATTTTCTGCAGTGCATGATGTGTTCTATGTCTCCATGCTGAGGAGGTATGTTGCAGACCCGACACATGTGGTTGACTTTGAGCCATTGCAAATTAATGAGGACTTGAGCTACAAGGAGCAACCAGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTCCATAATCGAGGAATCTCACTGGTCAAAGTTCTTTGGCGAAACCACGGAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGACTTGAGAGCCCAGTACCCCGAGCTGTTCGAGAACTAG

Coding sequence (CDS)

ATGTTGACAGCACAGAGCAGACAGAAGAGTTATGCTAATGAACAGCGTAAGGATCTCGAGTTTGAGGTGGAAGACATGGTCTTTCTGAAGGTAACACCTATGAAGGGTTGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCCCCATCATTTTCTGCAGTGCATGATGTGTTCTATGTCTCCATGCTGAGGAGGTATGTTGCAGACCCGACACATGTGGTTGACTTTGAGCCATTGCAAATTAATGAGGACTTGAGCTACAAGGAGCAACCAGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTCCATAATCGAGGAATCTCACTGGTCAAAGTTCTTTGGCGAAACCACGGAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGACTTGAGAGCCCAGTACCCCGAGCTGTTCGAGAACTAG

Protein sequence

MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKGWIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN

Homology

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BLAST of Pay0000859 vs. ExPASy TrEMBL
Match: A0A5A7SMC0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00290 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.5e-70
Identity = 140/162 (86.42%), Postives = 140/162 (86.42%), Query Frame = 0


Query: 1   MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WI 60
           MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG                      WI
Sbjct: 653 MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKGVLRFEKKGKLNPLFVGPFEILEWI 712

Query: 61  GPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILARE 120
           GPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILARE
Sbjct: 713 GPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILARE 772

Query: 121 VKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN 141
           VKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN
Sbjct: 773 VKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN 814

[Close]

BLAST of Pay0000859 vs. ExPASy TrEMBL
Match: A0A5D3E202 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00040 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.2e-61
Identity = 127/162 (78.40%), Postives = 135/162 (83.33%), Query Frame = 0


Query: 1   MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKGW----------------------I 60
           MLTAQSRQKSYA+E+RKDLEF+V DMVFLKV PMKG+                      I
Sbjct: 613 MLTAQSRQKSYADERRKDLEFDVGDMVFLKVAPMKGFLRFEKKGKLSPRFVGPFEILERI 672

Query: 61  GPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILARE 120
           GPVAYRLALPPSFSAVHDVF+VSMLRRYVADPTHVV FEPLQINEDLSY+EQPVEILARE
Sbjct: 673 GPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVAFEPLQINEDLSYEEQPVEILARE 732

Query: 121 VKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN 141
           VKML NR ISLVKVLWRNHGVEEATWEREED+RAQYPELFE+
Sbjct: 733 VKMLRNRHISLVKVLWRNHGVEEATWEREEDMRAQYPELFED 774

[Close]

BLAST of Pay0000859 vs. ExPASy TrEMBL
Match: A0A5A7U5P9 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001520 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58
Identity = 122/161 (75.78%), Postives = 132/161 (81.99%), Query Frame = 0


Query: 2   LTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG-------------WIGP-------- 61
           LTAQS QKSYA+++RKDLEFEV DMVFLKV PMKG             ++GP        
Sbjct: 179 LTAQSIQKSYADQRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSLHFVGPFEILERIG 238

Query: 62  -VAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILAREV 121
            VAYRLALPPSFS  HDVF+VSMLRRYVADPTHVVDFEPLQINEDLSY+EQP+EILAREV
Sbjct: 239 LVAYRLALPPSFSTAHDVFHVSMLRRYVADPTHVVDFEPLQINEDLSYEEQPIEILAREV 298

Query: 122 KMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN 141
           KMLHNR ISLVKVLWRNHGVEEATWEREED+R QYPELFE+
Sbjct: 299 KMLHNREISLVKVLWRNHGVEEATWEREEDMRVQYPELFED 339

[Close]

BLAST of Pay0000859 vs. ExPASy TrEMBL
Match: A0A5A7SWV1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G001070 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 7.5e-58
Identity = 118/162 (72.84%), Postives = 132/162 (81.48%), Query Frame = 0


Query: 1   MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WI 60
           MLTA+SRQKSYA+ +RKDLEFEV DMVFLKV PMKG                      WI
Sbjct: 1   MLTAKSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVMRFEKKGKLSPRFVGSFEILEWI 60

Query: 61  GPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILARE 120
           GPVAYRLALPPSFSAVHDVF+VSMLR+Y  DPTHVVD EPLQI+E+L+Y+E PVEILAR+
Sbjct: 61  GPVAYRLALPPSFSAVHDVFHVSMLRKYSPDPTHVVDSEPLQISENLTYEEHPVEILARD 120

Query: 121 VKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN 141
           VKML NRGISLVK+LWRNHGVEEATWER+ED+RAQYPELFE+
Sbjct: 121 VKMLRNRGISLVKILWRNHGVEEATWERDEDMRAQYPELFED 162

[Close]

BLAST of Pay0000859 vs. ExPASy TrEMBL
Match: A0A5A7U220 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00690 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 9.8e-58
Identity = 120/162 (74.07%), Postives = 131/162 (80.86%), Query Frame = 0


Query: 1   MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WI 60
           MLTAQSRQKSY +EQRKDLEF+V DMVFLKV PMK                        I
Sbjct: 175 MLTAQSRQKSYTDEQRKDLEFDVGDMVFLKVAPMKDVLRFKKKGKLSPRFVGSFEILERI 234

Query: 61  GPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILARE 120
           GPVAYRLALPP+FS VHDVF+VSMLR+YVADPTHVVDFEPLQINE+LSY+E+PVEILARE
Sbjct: 235 GPVAYRLALPPAFSTVHDVFHVSMLRKYVADPTHVVDFEPLQINENLSYEERPVEILARE 294

Query: 121 VKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN 141
           VKML NR I+LVKVLWRNHGV EATWERE+D+RAQYPELFEN
Sbjct: 295 VKMLRNREIALVKVLWRNHGVGEATWEREDDMRAQYPELFEN 336

[Close]

BLAST of Pay0000859 vs. NCBI nr
Match: KAA0025823.1 (pol protein [Cucumis melo var. makuwa] >TYK09633.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 140/162 (86.42%), Postives = 140/162 (86.42%), Query Frame = 0


Query: 1   MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WI 60
           MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG                      WI
Sbjct: 653 MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKGVLRFEKKGKLNPLFVGPFEILEWI 712

Query: 61  GPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILARE 120
           GPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILARE
Sbjct: 713 GPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILARE 772

Query: 121 VKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN 141
           VKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN
Sbjct: 773 VKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN 814

[Close]

BLAST of Pay0000859 vs. NCBI nr
Match: TYK29789.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 244.2 bits (622), Expect = 6.7e-61
Identity = 127/162 (78.40%), Postives = 135/162 (83.33%), Query Frame = 0


Query: 1   MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKGW----------------------I 60
           MLTAQSRQKSYA+E+RKDLEF+V DMVFLKV PMKG+                      I
Sbjct: 613 MLTAQSRQKSYADERRKDLEFDVGDMVFLKVAPMKGFLRFEKKGKLSPRFVGPFEILERI 672

Query: 61  GPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILARE 120
           GPVAYRLALPPSFSAVHDVF+VSMLRRYVADPTHVV FEPLQINEDLSY+EQPVEILARE
Sbjct: 673 GPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVAFEPLQINEDLSYEEQPVEILARE 732

Query: 121 VKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN 141
           VKML NR ISLVKVLWRNHGVEEATWEREED+RAQYPELFE+
Sbjct: 733 VKMLRNRHISLVKVLWRNHGVEEATWEREEDMRAQYPELFED 774

[Close]

BLAST of Pay0000859 vs. NCBI nr
Match: KAA0051192.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.7 bits (600), Expect = 2.4e-58
Identity = 122/161 (75.78%), Postives = 132/161 (81.99%), Query Frame = 0


Query: 2   LTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG-------------WIGP-------- 61
           LTAQS QKSYA+++RKDLEFEV DMVFLKV PMKG             ++GP        
Sbjct: 179 LTAQSIQKSYADQRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSLHFVGPFEILERIG 238

Query: 62  -VAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILAREV 121
            VAYRLALPPSFS  HDVF+VSMLRRYVADPTHVVDFEPLQINEDLSY+EQP+EILAREV
Sbjct: 239 LVAYRLALPPSFSTAHDVFHVSMLRRYVADPTHVVDFEPLQINEDLSYEEQPIEILAREV 298

Query: 122 KMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN 141
           KMLHNR ISLVKVLWRNHGVEEATWEREED+R QYPELFE+
Sbjct: 299 KMLHNREISLVKVLWRNHGVEEATWEREEDMRVQYPELFED 339

[Close]

BLAST of Pay0000859 vs. NCBI nr
Match: KAA0035814.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.5e-57
Identity = 118/162 (72.84%), Postives = 132/162 (81.48%), Query Frame = 0


Query: 1   MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WI 60
           MLTA+SRQKSYA+ +RKDLEFEV DMVFLKV PMKG                      WI
Sbjct: 1   MLTAKSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVMRFEKKGKLSPRFVGSFEILEWI 60

Query: 61  GPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILARE 120
           GPVAYRLALPPSFSAVHDVF+VSMLR+Y  DPTHVVD EPLQI+E+L+Y+E PVEILAR+
Sbjct: 61  GPVAYRLALPPSFSAVHDVFHVSMLRKYSPDPTHVVDSEPLQISENLTYEEHPVEILARD 120

Query: 121 VKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN 141
           VKML NRGISLVK+LWRNHGVEEATWER+ED+RAQYPELFE+
Sbjct: 121 VKMLRNRGISLVKILWRNHGVEEATWERDEDMRAQYPELFED 162

[Close]

BLAST of Pay0000859 vs. NCBI nr
Match: KAA0047631.1 (pol protein [Cucumis melo var. makuwa] >TYK08289.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 232.6 bits (592), Expect = 2.0e-57
Identity = 120/162 (74.07%), Postives = 131/162 (80.86%), Query Frame = 0


Query: 1   MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WI 60
           MLTAQSRQKSY +EQRKDLEF+V DMVFLKV PMK                        I
Sbjct: 175 MLTAQSRQKSYTDEQRKDLEFDVGDMVFLKVAPMKDVLRFKKKGKLSPRFVGSFEILERI 234

Query: 61  GPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILARE 120
           GPVAYRLALPP+FS VHDVF+VSMLR+YVADPTHVVDFEPLQINE+LSY+E+PVEILARE
Sbjct: 235 GPVAYRLALPPAFSTVHDVFHVSMLRKYVADPTHVVDFEPLQINENLSYEERPVEILARE 294

Query: 121 VKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN 141
           VKML NR I+LVKVLWRNHGV EATWERE+D+RAQYPELFEN
Sbjct: 295 VKMLRNREIALVKVLWRNHGVGEATWEREDDMRAQYPELFEN 336

The following BLAST results are available for this feature:

BLAST of Pay0000859 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0000859 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMC0	8.5e-70	86.42	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00290 PE...	[more]
A0A5D3E202	3.2e-61	78.40	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U5P9	1.2e-58	75.78	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SWV1	7.5e-58	72.84	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G001070 P...	[more]
A0A5A7U220	9.8e-58	74.07	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00690 PE...	[more]

BLAST of Pay0000859 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025823.1	1.8e-69	86.42	pol protein [Cucumis melo var. makuwa] >TYK09633.1 pol protein [Cucumis melo var...	[more]
TYK29789.1	6.7e-61	78.40	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051192.1	2.4e-58	75.78	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035814.1	1.5e-57	72.84	pol protein [Cucumis melo var. makuwa]	[more]
KAA0047631.1	2.0e-57	74.07	pol protein [Cucumis melo var. makuwa] >TYK08289.1 pol protein [Cucumis melo var...	[more]

BLAST of Pay0000859 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..138
None	No IPR available	PANTHER	PTHR46148:SF11	CCHC-TYPE INTEGRASE	coord: 1..138
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 70..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0000859.1	Pay0000859.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding